Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Reverse (-)

11088248 .. 11090122

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G073400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

ATGAAAACCTTGAGAAGAAACAAGGAGGGAATCTATAACACTGCTCAAAACTATCACAGAAAGTTCTCAGCCATCACCAGGGTCGTTAGAACTGACAGACCCAGACCCCAAGAATGCCTTGTTTTGGTGGAGGCAAGGGACACTAATACTCCACTTCTGCATCAAATCTTGCAAAGCTGTGCAAGAACAGGTGCACCCATGGAAGGTAAGGCCTGCCATGGACAGATCATACGTGTTGGATTGCAAGCAGACACTTTAACATCTAACATGCTCATCAACATGTATTCTAAATGCAGTTTAGTTGATTGTGCTGGCAAAGTTTTTGATGAAATGCCTGAAAGAAGCTTAGTTTCATGGAACACGATGATTGGGTCACTTACCCAGAGTGGGGAGGAAGAGAAAGCTCTTGGTCTTTTCTTGCAGATGCGAAGAGAAGCGAACCATTTTAGTGAATTCACTGTTTCGAGTGTTCTTTGTGCTTGTGCTGCGAAATGTGCTGTTTTTGAGTGTAAACAACTGCACGCTCTTGCTGTTAAGTTAGCAATGAATTTAAATGTCTATGTGGGAACTGCATTGCTTGACGTTTATGCAAAGTCTGGTTTGATAAAGGATGCAAGCAGTGTGTTTGCGTCTCTGCCAGAGAGGAGTCTGGCAGCTCTTATTGAAGGGAAGCAGGTGCATGCCGTGTTATGTAAAACTGGATTTGGTTTGAATAAATTTATTGTTTCCTCTCTTATAGACATGTATGCAAAATGTGGTAGCATTAAAGAAGCTTACCATGTGTTTCGAGATATGGACGAGACAAACACTGTGTTATGGAATACCATGATTTCTGGGTTTGCTAGACATGCTTGCTCCCTAGAGGTGATGATCTTATTTGAGAAAATGCAGCAGATGGGTATGTTCCCAAGTGAAGTAACGCATGTTTCTGTATTAACTGCTTGTAGTCATATGGGATTGGTTGAAAGTGCAAGGAAATACTTCAACCTCATGATAACAGAACACAATGTGTCACCTAATGTTGTTCACTATTCATGCATGGTTGATCTTTTTGGTCGTTCAGGGTTGTTGCTTGAAGCCTATAATTTGATAGAGGAAATGCCATTTGATGCTACTGCTTCCATGTGGGGTTCACTGTTGGCTTCTTGTAGGATCTATGGAAAACTTCACTTGGCTGAGGTAGCAGCTAAGCATTTGTCTGAGATAGAACCTAATAATGCCGGAAACCATATTCTGCTGTCAAACATTTATGCAGCAAATAAGAAATGGGATGAAGTTGCAAGAATAAGGAAACTTCTTAAAGAAAGTGAGTTGAAGAAGGAGAGAGGGAAGAGTTGGATCGAAATCAAGGACAAAGTTCACTCATTTATGGTTGGAGAGAGAAAGCATGCTAGAATTGCTGAGATATACTCAAAATTGGATTGTTTGATCGAAGAGTTGAAGATTATGGGCTATAAGGCTGAGACTGAACATGACCTTCATTATGTGGGAGAGAACAGAAAACATGAACTGTTGAGGCACCATAGCGAGAAACTTGCTCTTACTTTGGGGCTGATGTGCTTACCTTCAAATGCATCTATCAGGATCATGAAGAATCTTAGGATTTGTGGTGATTGCCATTCTTTTATGAAGTTTGCATCATCTTGTACAGGGAAGGAAATCATTGTCAGGGATACTAATAGGTTCCACCATTTCAAGAATGGTTGTTGTTCTTGTCGGGAATTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

577

Amino Acids

64.94

Weight (kDa)

8.63

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	664
Acc36I	ACCTGC	1 cut(s)	664
AccB1I	GGYRCC	1 cut(s)	1518
AclWI	GGATC	3 cut(s)	1160, 1346, 1592
AcsI	RAATTY	4 cut(s)	452, 547, 716, 1721
AdeI	CACNNNGTG	1 cut(s)	1009
AfaI	GTAC	1 cut(s)	1648
AfiI	CCNNNNNNNGG	5 cut(s)	78, 124, 203, 387, 388
AflIII	ACRYGT	3 cut(s)	232, 279, 741
AgsI	TTSAA	9 cut(s)	665, 712, 965, 985, 1076, 1315, 1441, 1569, 1696
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	6 cut(s)	177, 345, 404, 656, 773, 1187
AluI	AGCT	6 cut(s)	177, 345, 404, 656, 773, 1187
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	3 cut(s)	636, 794, 1457
Alw44I	GTGCAC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	1160, 1346, 1592
AoxI	GGCC	1 cut(s)	210
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	5 cut(s)	485, 653, 889, 1184, 1253
ApoI	RAATTY	4 cut(s)	452, 547, 716, 1721
Asp700I	GAANNNNTTC	1 cut(s)	980
AsuHPI	GGTGA	4 cut(s)	67, 877, 1005, 1622
BaeGI	GKGCMC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	1518
Bbv12I	GWGCWC	1 cut(s)	196
BbvCI	CCTCAGC	1 cut(s)	1176
BbvI	GCAGC	5 cut(s)	472, 665, 901, 1196, 1265
BccI	CCATC	2 cut(s)	80, 889
BceAI	ACGGC	1 cut(s)	668
BcgI	CGANNNNNNTGC	2 cut(s)	1517, 1551
BciT130I	CCWGG	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	1666
BcoDI	GTCTC	3 cut(s)	636, 794, 1457
BfaI	CTAG	3 cut(s)	843, 860, 1392
BfuAI	ACCTGC	1 cut(s)	664
BfuI	GTATCC	1 cut(s)	1666
BisI	GCNGC	5 cut(s)	486, 654, 890, 1185, 1254
BlpI	GCTNAGC	1 cut(s)	1188
BlsI	GCNGC	5 cut(s)	487, 655, 891, 1186, 1255
Bme1390I	CCNGG	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	1520, 1685
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	6 cut(s)	169, 414, 601, 1099, 1583, 1646
BplI	GAGNNNNNCTC	2 cut(s)	1394, 1426
Bpu10I	CCTNAGC	1 cut(s)	1176
Bpu1102I	GCTNAGC	1 cut(s)	1188
BpuEI	CTTGAG	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	1343
BsaJI	CCNNGG	3 cut(s)	78, 198, 217
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	5 cut(s)	78, 124, 203, 387, 388
Bse1I	ACTGG	1 cut(s)	703
Bse3DI	GCAATG	2 cut(s)	549, 572
Bse8I	GATNNNNATC	1 cut(s)	1343
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	78, 198, 217
BseGI	GGATG	2 cut(s)	616, 1276
BseJI	GATNNNNATC	1 cut(s)	1343
BseLI	CCNNNNNNNGG	5 cut(s)	78, 124, 203, 387, 388
BseMI	GCAATG	2 cut(s)	549, 572
BseMII	CTCAG	5 cut(s)	81, 1167, 1191, 1392, 1452
BseNI	ACTGG	1 cut(s)	703
BseRI	GAGGAG	1 cut(s)	658
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	5 cut(s)	472, 665, 901, 1196, 1265
BsgI	GTGCAG	1 cut(s)	503
BshFI	GGCC	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	1518
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	1221
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	5 cut(s)	78, 124, 203, 387, 388
BsmAI	GTCTC	3 cut(s)	636, 794, 1457
BsmBI	CGTCTC	1 cut(s)	636
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp1407I	TGTACA	1 cut(s)	1646
Bsp143I	GATC	7 cut(s)	225, 870, 1045, 1152, 1338, 1428, 1584
Bsp1720I	GCTNAGC	1 cut(s)	1188
Bsp19I	CCATGG	2 cut(s)	198, 217
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	5 cut(s)	80, 1168, 1192, 1393, 1453
BspHI	TCATGA	2 cut(s)	990, 1587
BspLI	GGNNCC	2 cut(s)	1520, 1685
BspMI	ACCTGC	1 cut(s)	664
BspPI	GGATC	3 cut(s)	1160, 1346, 1592
BspT107I	GGYRCC	1 cut(s)	1518
BsrDI	GCAATG	2 cut(s)	549, 572
BsrGI	TGTACA	1 cut(s)	1646
BsrI	ACTGG	1 cut(s)	703
BssECI	CCNNGG	3 cut(s)	78, 198, 217
BssMI	GATC	7 cut(s)	225, 870, 1045, 1152, 1338, 1428, 1584
BssT1I	CCWWGG	2 cut(s)	198, 217
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	4 cut(s)	460, 811, 1137, 1512
Bst6I	CTCTTC	4 cut(s)	390, 424, 1325, 1428
BstAUI	TGTACA	1 cut(s)	1646
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	8 cut(s)	214, 246, 313, 522, 616, 681, 853, 1389
BstDEI	CTNAG	8 cut(s)	67, 346, 1176, 1188, 1200, 1401, 1461, 1598
BstDSI	CCRYGG	2 cut(s)	198, 217
BstF5I	GGATG	2 cut(s)	616, 1276
BstKTI	GATC	7 cut(s)	228, 873, 1048, 1155, 1341, 1431, 1587
BstMAI	GTCTC	3 cut(s)	636, 794, 1457
BstMBI	GATC	7 cut(s)	225, 870, 1045, 1152, 1338, 1428, 1584
BstMWI	GCNNNNNNNGC	5 cut(s)	485, 494, 848, 1181, 1397
BstNI	CCWGG	1 cut(s)	79
BstNSI	RCATGY	7 cut(s)	271, 283, 683, 745, 851, 926, 1391
BstSCI	CCNGG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	5 cut(s)	472, 665, 901, 1196, 1265
BstX2I	RGATCY	1 cut(s)	1152
BstYI	RGATCY	1 cut(s)	1152
BsuI	GTATCC	1 cut(s)	1666
BsuRI	GGCC	1 cut(s)	212
BtgI	CCRYGG	2 cut(s)	198, 217
BtsCI	GGATG	2 cut(s)	616, 1276
BtsI	GCAGTG	2 cut(s)	39, 625
BtsIMutI	CAGTG	5 cut(s)	39, 456, 625, 807, 1133
BveI	ACCTGC	1 cut(s)	664
Cac8I	GCNNGC	8 cut(s)	214, 246, 313, 522, 616, 681, 853, 1389
CciI	TCATGA	2 cut(s)	990, 1587
CseI	GACGC	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	1647
CviQI	GTAC	1 cut(s)	1647
DdeI	CTNAG	8 cut(s)	67, 346, 1176, 1188, 1200, 1401, 1461, 1598
DpnI	GATC	7 cut(s)	227, 872, 1047, 1154, 1340, 1430, 1586
DpnII	GATC	7 cut(s)	225, 870, 1045, 1152, 1338, 1428, 1584
DraI	TTTAAA	1 cut(s)	552
DraIII	CACNNNGTG	1 cut(s)	1009
Eam1104I	CTCTTC	4 cut(s)	390, 424, 1325, 1428
EarI	CTCTTC	4 cut(s)	390, 424, 1325, 1428
Eco130I	CCWWGG	2 cut(s)	198, 217
Eco147I	AGGCCT	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	2 cut(s)	198, 217
EcoT22I	ATGCAT	2 cut(s)	1040, 1576
ErhI	CCWWGG	2 cut(s)	198, 217
Esp3I	CGTCTC	1 cut(s)	636
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	152
FauNDI	CATATG	1 cut(s)	951
Fnu4HI	GCNGC	5 cut(s)	486, 654, 890, 1185, 1254
FokI	GGATG	2 cut(s)	623, 1283
Fsp4HI	GCNGC	5 cut(s)	486, 654, 890, 1185, 1254
FspBI	CTAG	3 cut(s)	843, 860, 1392
GluI	GCNGC	5 cut(s)	486, 654, 890, 1185, 1254
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	1221
HgaI	GACGC	1 cut(s)	618
HindIII	AAGCTT	2 cut(s)	343, 771
HinfI	GANTC	3 cut(s)	30, 646, 1594
HpaII	CCGG	1 cut(s)	1221
HphI	GGTGA	4 cut(s)	67, 877, 1005, 1622
Hpy166II	GTNNAC	5 cut(s)	194, 512, 1027, 1133, 1360
Hpy188I	TCNGA	1 cut(s)	1201
Hpy188III	TCNNGA	6 cut(s)	788, 991, 1582, 1588, 1696, 1718
Hpy8I	GTNNAC	5 cut(s)	194, 512, 1027, 1133, 1360
HpyAV	CCTTC	6 cut(s)	197, 659, 1312, 1487, 1575, 1648
HpyCH4III	ACNGT	4 cut(s)	460, 811, 1137, 1512
HpyCH4IV	ACGT	2 cut(s)	232, 582
HpyF10VI	GCNNNNNNNGC	5 cut(s)	485, 494, 848, 1181, 1397
HpyF3I	CTNAG	8 cut(s)	67, 346, 1176, 1188, 1200, 1401, 1461, 1598
HpySE526I	ACGT	2 cut(s)	232, 582
Kzo9I	GATC	7 cut(s)	225, 870, 1045, 1152, 1338, 1428, 1584
LmnI	GCTCC	1 cut(s)	860
Lsp1109I	GCAGC	5 cut(s)	472, 665, 901, 1196, 1265
LweI	GCATC	6 cut(s)	169, 414, 601, 1099, 1583, 1646
MaeI	CTAG	3 cut(s)	843, 860, 1392
MaeII	ACGT	2 cut(s)	232, 582
MaeIII	GTNAC	3 cut(s)	372, 916, 1011
MalI	GATC	7 cut(s)	227, 872, 1047, 1154, 1340, 1430, 1586
MboI	GATC	7 cut(s)	225, 870, 1045, 1152, 1338, 1428, 1584
MboII	GAAGA	8 cut(s)	27, 407, 441, 1327, 1342, 1445, 1453, 1603
MflI	RGATCY	1 cut(s)	1152
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	7 cut(s)	452, 547, 716, 1084, 1395, 1415, 1721
MlyI	GAGTC	1 cut(s)	655
MmeI	TCCRAC	3 cut(s)	217, 1316, 1354
Mph1103I	ATGCAT	2 cut(s)	1040, 1576
MroXI	GAANNNNTTC	1 cut(s)	980
MseI	TTAA	6 cut(s)	257, 534, 551, 765, 935, 1299
MslI	CAYNNNNRTG	2 cut(s)	278, 447
MspI	CCGG	1 cut(s)	1221
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	5 cut(s)	485, 494, 848, 1181, 1397
NcoI	CCATGG	2 cut(s)	198, 217
NdeI	CATATG	1 cut(s)	951
NdeII	GATC	7 cut(s)	225, 870, 1045, 1152, 1338, 1428, 1584
NlaIV	GGNNCC	2 cut(s)	1520, 1685
NmuCI	GTSAC	2 cut(s)	372, 1011
NsiI	ATGCAT	2 cut(s)	1040, 1576
NspI	RCATGY	7 cut(s)	271, 283, 683, 745, 851, 926, 1391
PaeI	GCATGC	2 cut(s)	683, 1391
PagI	TCATGA	2 cut(s)	990, 1587
PaqCI	CACCTGC	1 cut(s)	664
PceI	AGGCCT	1 cut(s)	212
PciI	ACATGT	2 cut(s)	279, 741
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	980
PfeI	GAWTC	2 cut(s)	30, 1594
PkrI	GCNGC	5 cut(s)	487, 655, 891, 1186, 1255
PleI	GAGTC	1 cut(s)	654
PpsI	GAGTC	1 cut(s)	654
Ppu21I	YACGTR	1 cut(s)	233
PscI	ACATGT	2 cut(s)	279, 741
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	1520, 1685
PsuI	RGATCY	1 cut(s)	1152
RsaI	GTAC	1 cut(s)	1648
RsaNI	GTAC	1 cut(s)	1647
RseI	CAYNNNNRTG	2 cut(s)	278, 447
SaqAI	TTAA	6 cut(s)	257, 534, 551, 765, 935, 1299
SatI	GCNGC	5 cut(s)	486, 654, 890, 1185, 1254
Sau3AI	GATC	7 cut(s)	225, 870, 1045, 1152, 1338, 1428, 1584
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	6 cut(s)	169, 414, 601, 1099, 1583, 1646
SmiI	ATTTAAAT	1 cut(s)	552
SmiMI	CAYNNNNRTG	2 cut(s)	278, 447
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SphI	GCATGC	2 cut(s)	683, 1391
Sse9I	AATT	7 cut(s)	452, 547, 716, 1084, 1395, 1415, 1721
SseBI	AGGCCT	1 cut(s)	212
SspMI	CTAG	3 cut(s)	843, 860, 1392
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	2 cut(s)	198, 217
SwaI	ATTTAAAT	1 cut(s)	552
TaaI	ACNGT	4 cut(s)	460, 811, 1137, 1512
TaiI	ACGT	2 cut(s)	235, 585
TaqI	TCGA	4 cut(s)	464, 787, 1341, 1431
TasI	AATT	7 cut(s)	452, 547, 716, 1084, 1395, 1415, 1721
TatI	WGTACW	1 cut(s)	1646
TfiI	GAWTC	2 cut(s)	30, 1594
Tru1I	TTAA	6 cut(s)	257, 534, 551, 765, 935, 1299
Tru9I	TTAA	6 cut(s)	257, 534, 551, 765, 935, 1299
TscAI	CASTG	5 cut(s)	46, 463, 625, 814, 1140
TseFI	GTSAC	2 cut(s)	372, 1011
TseI	GCWGC	5 cut(s)	485, 653, 889, 1184, 1253
Tsp45I	GTSAC	2 cut(s)	372, 1011
TspRI	CASTG	5 cut(s)	46, 463, 625, 814, 1140
VneI	GTGCAC	1 cut(s)	192
XapI	RAATTY	4 cut(s)	452, 547, 716, 1721
XceI	RCATGY	7 cut(s)	271, 283, 683, 745, 851, 926, 1391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1697
XmnI	GAANNNNTTC	1 cut(s)	980
XspI	CTAG	3 cut(s)	843, 860, 1392
Zsp2I	ATGCAT	2 cut(s)	1040, 1576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.