Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Forward (+)

4862541 .. 4863071

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0028600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTCGTGCCTTGCTAGGCATAGAGATTGAGCCACAATTTAATGAGCCATACCTCTCCACCTCACTCCAAGACTTCTGGGGCAAGCGATGGAATCTCATGGTCTCAAGTATTCTACGCCCAACAGTATACGAACCCACCCTTAACATTTCCAAACATGTCGTTGGTCGTAAGTGGGCCTCATTACCTGCCGTACTTGCAACATTTGGTGTATCGGCGTTGATGCATGAGCTCATTTTTTACCACATGGGCCGAATGCCGATAACGGGTGAAGTTACATGCTTCTTCACGCTCCACGGGATCTGCCTAGCGGTTGAGATCTTTTTCAACAAGGCACTAACAAATAGGTGGCAACTTCCGATGTTGATCTCTCGATTTATGACCATTTTATTCGTGATATCAACGTCCGTGTGGCTGTTTCTTCCGCAATTTCTTCGGATTGGGGTTGAAGTTGGGGCGTTCGAAGAGTATGCTGCATTGGGAACATTTTTTAAGAATCTCATGAACATGACTGTTTTTAGGATTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

176

Amino Acids

20.21

Weight (kDa)

9.06

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBOAT_2	PF13813	11 - 97	2.4e-18	Membrane bound O-acyl transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	2 cut(s)	311, 425
AclWI	GGATC	1 cut(s)	308
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	328, 449
AluBI	AGCT	2 cut(s)	232, 528
AluI	AGCT	2 cut(s)	232, 528
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	177, 250
ApeKI	GCWGC	1 cut(s)	473
AspS9I	GGNCC	2 cut(s)	177, 250
AsuHPI	GGTGA	1 cut(s)	281
AsuII	TTCGAA	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	1 cut(s)	84
BceAI	ACGGC	1 cut(s)	176
BcgI	CGANNNNNNTGC	4 cut(s)	416, 450, 452, 486
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	3 cut(s)	17, 308, 529
BfuAI	ACCTGC	1 cut(s)	196
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	177, 250
BmsI	GCATC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	295
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	460
BshFI	GGCC	2 cut(s)	179, 252
BsiHKAI	GWGCWC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	179, 252
Bso31I	GGTCTC	1 cut(s)	109
Bsp119I	TTCGAA	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	300, 318, 366
BspACI	CCGC	2 cut(s)	311, 425
BspANI	GGCC	2 cut(s)	179, 252
BspHI	TCATGA	1 cut(s)	501
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	308
BspT104I	TTCGAA	1 cut(s)	462
BspTNI	GGTCTC	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	3 cut(s)	300, 318, 366
BssNAI	GTATAC	1 cut(s)	130
BssSI	CACGAG	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	127, 514
Bst6I	CTCTTC	1 cut(s)	459
BstBI	TTCGAA	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	86
BstDSI	CCRYGG	1 cut(s)	295
BstKTI	GATC	3 cut(s)	303, 321, 369
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	300, 318, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	161, 282
BstV1I	GCAGC	1 cut(s)	460
BstX2I	RGATCY	2 cut(s)	300, 318
BstYI	RGATCY	2 cut(s)	300, 318
BstZ17I	GTATAC	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	179, 252
BtgI	CCRYGG	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	86
CciI	TCATGA	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	177, 250
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	7 cut(s)	100, 158, 227, 247, 279, 502, 508
CviJI	RGCY	8 cut(s)	5, 34, 49, 179, 232, 252, 415, 528
CviKI_1	RGCY	8 cut(s)	5, 34, 49, 179, 232, 252, 415, 528
CviQI	GTAC	1 cut(s)	194
DpnI	GATC	3 cut(s)	302, 320, 368
DpnII	GATC	3 cut(s)	300, 318, 366
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	7 cut(s)	103, 161, 230, 250, 282, 505, 511
FatI	CATG	7 cut(s)	99, 157, 226, 246, 278, 501, 507
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	474
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	3 cut(s)	17, 308, 529
GluI	GCNGC	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	179, 252
Hin1II	CATG	7 cut(s)	103, 161, 230, 250, 282, 505, 511
HinfI	GANTC	2 cut(s)	94, 496
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	360, 438
Hpy188III	TCNNGA	3 cut(s)	372, 394, 502
Hpy8I	GTNNAC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	127, 514
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	3 cut(s)	200, 226, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	7 cut(s)	103, 161, 230, 250, 282, 505, 511
Kzo9I	GATC	3 cut(s)	300, 318, 366
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	2 cut(s)	64, 201
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	3 cut(s)	17, 308, 529
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	3 cut(s)	302, 320, 368
MboI	GATC	3 cut(s)	300, 318, 366
MboII	GAAGA	4 cut(s)	277, 413, 425, 476
MflI	RGATCY	2 cut(s)	300, 318
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	2 cut(s)	38, 428
MnlI	CCTC	3 cut(s)	65, 73, 190
Mph1103I	ATGCAT	1 cut(s)	228
MseI	TTAA	3 cut(s)	42, 144, 492
MslI	CAYNNNNRTG	1 cut(s)	506
Mva1269I	GAATGC	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	3 cut(s)	300, 318, 366
NlaIII	CATG	7 cut(s)	103, 161, 230, 250, 282, 505, 511
NsiI	ATGCAT	1 cut(s)	228
NspI	RCATGY	2 cut(s)	161, 282
NspV	TTCGAA	1 cut(s)	462
PagI	TCATGA	1 cut(s)	501
PciI	ACATGT	1 cut(s)	157
PctI	GAATGC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	94, 496
PkrI	GCNGC	1 cut(s)	475
PscI	ACATGT	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	177, 250
PsuI	RGATCY	2 cut(s)	300, 318
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	42, 144, 492
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	3 cut(s)	300, 318, 366
Sau96I	GGNCC	2 cut(s)	177, 250
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	7 cut(s)	57, 65, 190, 234, 350, 407, 530
SfaNI	GCATC	1 cut(s)	213
SfuI	TTCGAA	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	2 cut(s)	38, 428
SsiI	CCGC	2 cut(s)	311, 425
SspMI	CTAG	3 cut(s)	17, 308, 529
SstI	GAGCTC	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	127, 514
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	2 cut(s)	373, 462
TasI	AATT	2 cut(s)	38, 428
TfiI	GAWTC	2 cut(s)	94, 496
Tru1I	TTAA	3 cut(s)	42, 144, 492
Tru9I	TTAA	3 cut(s)	42, 144, 492
TseI	GCWGC	1 cut(s)	473
TspDTI	ATGAA	1 cut(s)	518
TspGWI	ACGGA	1 cut(s)	397
XceI	RCATGY	2 cut(s)	161, 282
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	3 cut(s)	17, 308, 529
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.