Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Forward (+)

47778545 .. 47778886

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1363000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTTGGTATTTTAGGTCGCTCAGGGTTGATTCTTGAAGCCTATGACTTGATACAGAAAATTCCGTTTGGTGCTACTGTTTCTATGTGGGGTTCTCTGTTGGCTTCTTGTAGGATCCATGGAAATATTGACTTGGCCGAGGTCGCAACAAAGCATTTGTCTGAGATAGAACCTAATAATGCAGGAAACCATATATTGCTGTCAAATGTTTATGCAGCAAATAACAAGTGGGGGGAAGTTGCGAGGAGGAGGGAGATTCTTAAAGAAAGCGAGTTGAAGAAAGACATAGGGAAGAGTTGGATTGAAATAAAGGACAAAGTTCACTCATTTATGGTCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

114

Amino Acids

12.53

Weight (kDa)

7.9

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	40 - 102	6.4e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	109, 122
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	38, 277, 305
AlwI	GGATC	2 cut(s)	109, 122
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	60
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
BamHI	GGATCC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	118, 138
BseDI	CCNNGG	2 cut(s)	118, 138
BseMII	CTCAG	2 cut(s)	36, 153
BseRI	GAGGAG	2 cut(s)	259, 262
BseXI	GCAGC	1 cut(s)	227
BshFI	GGCC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	118
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	35, 154
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	109, 122
BssECI	CCNNGG	2 cut(s)	118, 138
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	22, 162
BstDSI	CCRYGG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	118
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	3 cut(s)	41, 104, 137
CviKI_1	RGCY	3 cut(s)	41, 104, 137
DdeI	CTNAG	2 cut(s)	22, 162
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	1 cut(s)	122
FaiI	YATR	8 cut(s)	45, 86, 120, 192, 194, 213, 287, 332
FatI	CATG	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	122
HinfI	GANTC	2 cut(s)	31, 256
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	2 cut(s)	163, 338
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	182, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	22, 162
Hsp92II	CATG	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	2 cut(s)	9, 168
Lsp1109I	GCAGC	1 cut(s)	227
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	2 cut(s)	289, 304
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	278, 316
MnlI	CCTC	4 cut(s)	133, 237, 240, 243
MseI	TTAA	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	31, 256
PkrI	GCNGC	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	114
SetI	ASST	3 cut(s)	19, 144, 175
Sse9I	AATT	1 cut(s)	60
SspI	AATATT	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	79
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	31, 256
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseI	GCWGC	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	54
XapI	RAATTY	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.