Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Reverse (-)

10757753 .. 10759515

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAAAACCTTGAGAAGAAACAAGGAGGGAATCTATAACACTGCTCAAAACTATCACAGAAAGTTCTCAGCCATCGCCAAGGGCGCTAGAGCTAACAGACCTAGACACCAAGAATGCCTTGTTTTGGTGGAGACAAGGGACACTTATACTCCACTTCTGCATCAAATCTTGCAAAGCTGTGCAAGAACAGGTGCACCCATGGAAGCAATGAATTTAAATGTCTATGTGGGAATTGCATTGCTTGACGTTTATTCAAAGTCTGGTTTGATAAAGGATGCAAGCTGTGTGTTTGCGTCTCTGCCAGAGAGGAGTGAGGTTACTTGGAGTTCGATGGTAGCCGGGTATGTGCAAAATGGGCTTTATGAGGAGGCTTTGATGTTCTTCCATAGAGCTAAAATGATGGGGTTATTGCAGAACCAGTTTACAATTTCTTCTGCTATTTGTGCTTGTGTAGGTCTGGCAGCTCTTATTGAAGGGAAGCAGGTGCATGCCGTGTTATGTAAAACTGGATTTGGTTTGAATATATTTATTGTTTCCTCTCTTATAGACATGTATGCAAAATGTGGTAGCATTAAAGAAGCTTACCATGCAGGTGATGATCTATTTGAGAAAATGCAGGAGATGGGTAGGTTCCCAAGTGAAGTAACGTATGTTTATGTATTAACTGCTTGTAGTCATATGGGATTGATTGAAAGTGAAAGGAAATACTTCAACCTCACAGAACACAATGTGTCACCTACTGTTGTTCACTATTCATGCATGATTGATCTTTTTGTGTTGGCTTCTTGTAGGATCCATGGAAAACTTCACTTGGCTGAGGTAGCAGCTAAGCATTTGTCTGAGATAGAACCTAATAATGCCGGGAAGAGTTGGATTGAAATCAAGGACAAAATTCACTCATTCATGGTTGGAGAGTTTCGCATAATTGCTGGGATATACTCAAAATTGGACTGTTTGATCGAAGAGTTGAAGATTATGGGCTACGCGGCTGAGACTGAACATGACCTTCATTATATGGGAGAGAACAGAAAACATGAACCTTTGAGGCACCACAGTGAGAAACTTGCTCTTACTTTGGGGTTGATGCGTTTACCTTCAAATGCATCTATCAGGATCATGAAGAATCTTAGGATTTGTGGTGATTGCCATTCTTTTATGAAGATTGCATCATCTTGTACTGGGAAGGAAATCATCGTCAGGGATACTAACATGTTCCACCATTTCAAGAATGGTTGTTGTTCTTGTCGGGAATTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

420

Amino Acids

47.28

Weight (kDa)

8.36

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	472, 581
Acc36I	ACCTGC	2 cut(s)	472, 581
AccB1I	GGYRCC	1 cut(s)	1047
AccII	CGCG	1 cut(s)	986
AciI	CCGC	1 cut(s)	986
AclWI	GGATC	3 cut(s)	787, 800, 1121
AcsI	RAATTY	3 cut(s)	211, 891, 1250
AdeI	CACNNNGTG	1 cut(s)	730
AfaI	GTAC	1 cut(s)	1177
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflIII	ACRYGT	2 cut(s)	549, 1209
AgsI	TTSAA	9 cut(s)	255, 473, 520, 692, 712, 878, 970, 1098, 1225
AleI	CACNNNNGTG	1 cut(s)	1053
AluBI	AGCT	7 cut(s)	92, 177, 282, 392, 464, 581, 827
AluI	AGCT	7 cut(s)	92, 177, 282, 392, 464, 581, 827
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	3 cut(s)	125, 300, 986
Alw44I	GTGCAC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	787, 800, 1121
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	461, 824
ApoI	RAATTY	3 cut(s)	211, 891, 1250
Asp700I	GAANNNNTTC	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	86
AsuC2I	CCSGG	2 cut(s)	340, 862
AsuHPI	GGTGA	3 cut(s)	605, 726, 1151
BaeGI	GKGCMC	1 cut(s)	196
BamHI	GGATCC	1 cut(s)	792
BanI	GGYRCC	1 cut(s)	1047
Bbv12I	GWGCWC	1 cut(s)	196
BbvCI	CCTCAGC	1 cut(s)	816
BbvI	GCAGC	2 cut(s)	473, 836
BccI	CCATC	4 cut(s)	80, 325, 394, 616
BceAI	ACGGC	1 cut(s)	476
BciVI	GTATCC	1 cut(s)	1195
BcnI	CCSGG	2 cut(s)	340, 862
BcoDI	GTCTC	3 cut(s)	125, 300, 986
BfaI	CTAG	2 cut(s)	87, 102
BfoI	RGCGCY	1 cut(s)	87
BfuAI	ACCTGC	2 cut(s)	472, 581
BfuI	GTATCC	1 cut(s)	1195
BisI	GCNGC	3 cut(s)	462, 825, 987
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	3 cut(s)	463, 826, 988
Bme1390I	CCNGG	2 cut(s)	340, 862
BmiI	GGNNCC	3 cut(s)	632, 794, 1049
BmrFI	CCNGG	2 cut(s)	340, 862
BmrI	ACTGGG	1 cut(s)	1188
BmsI	GCATC	5 cut(s)	169, 265, 1074, 1112, 1175
BmuI	ACTGGG	1 cut(s)	1188
Bpu10I	CCTNAGC	1 cut(s)	816
Bpu1102I	GCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	340, 862
BsaBI	GATNNNNATC	1 cut(s)	878
BsaJI	CCNNGG	3 cut(s)	78, 198, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	3 cut(s)	418, 511, 1183
Bse3DI	GCAATG	2 cut(s)	213, 236
Bse8I	GATNNNNATC	1 cut(s)	878
BseDI	CCNNGG	3 cut(s)	78, 198, 796
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	878
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	2 cut(s)	213, 236
BseMII	CTCAG	4 cut(s)	81, 807, 831, 981
BseNI	ACTGG	3 cut(s)	418, 511, 1183
BseRI	GAGGAG	2 cut(s)	322, 380
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	473, 836
BseYI	CCCAGC	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	986
BshNI	GGYRCC	1 cut(s)	1047
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	339, 861
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	3 cut(s)	125, 300, 986
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	5 cut(s)	598, 766, 792, 957, 1113
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp19I	CCATGG	2 cut(s)	198, 796
BspACI	CCGC	1 cut(s)	986
BspCNI	CTCAG	4 cut(s)	80, 808, 832, 982
BspFNI	CGCG	1 cut(s)	986
BspHI	TCATGA	1 cut(s)	1116
BspLI	GGNNCC	3 cut(s)	632, 794, 1049
BspMI	ACCTGC	2 cut(s)	472, 581
BspPI	GGATC	3 cut(s)	787, 800, 1121
BspT107I	GGYRCC	1 cut(s)	1047
BsrDI	GCAATG	2 cut(s)	213, 236
BsrI	ACTGG	3 cut(s)	418, 511, 1183
BssECI	CCNNGG	3 cut(s)	78, 198, 796
BssMI	GATC	5 cut(s)	598, 766, 792, 957, 1113
BssT1I	CCWWGG	3 cut(s)	78, 198, 796
Bst4CI	ACNGT	3 cut(s)	742, 953, 1055
Bst6I	CTCTTC	2 cut(s)	860, 957
BstC8I	GCNNGC	2 cut(s)	280, 489
BstDEI	CTNAG	6 cut(s)	67, 816, 828, 840, 990, 1127
BstDSI	CCRYGG	2 cut(s)	198, 796
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	986
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	5 cut(s)	601, 769, 795, 960, 1116
BstMAI	GTCTC	3 cut(s)	125, 300, 986
BstMBI	GATC	5 cut(s)	598, 766, 792, 957, 1113
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 355, 443, 587, 821
BstNSI	RCATGY	3 cut(s)	491, 553, 1213
BstSCI	CCNGG	2 cut(s)	338, 860
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	986
BstV1I	GCAGC	2 cut(s)	473, 836
BstX2I	RGATCY	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	792
BsuI	GTATCC	1 cut(s)	1195
BtgI	CCRYGG	2 cut(s)	198, 796
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 1060
BveI	ACCTGC	2 cut(s)	472, 581
Cac8I	GCNNGC	2 cut(s)	280, 489
CciI	TCATGA	1 cut(s)	1116
CfoI	GCGC	1 cut(s)	86
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	1176
CviQI	GTAC	1 cut(s)	1176
DdeI	CTNAG	6 cut(s)	67, 816, 828, 840, 990, 1127
DpnI	GATC	5 cut(s)	600, 768, 794, 959, 1115
DpnII	GATC	5 cut(s)	598, 766, 792, 957, 1113
DraI	TTTAAA	1 cut(s)	216
DraIII	CACNNNGTG	1 cut(s)	730
Eam1104I	CTCTTC	2 cut(s)	860, 957
EarI	CTCTTC	2 cut(s)	860, 957
Eco130I	CCWWGG	3 cut(s)	78, 198, 796
EcoT14I	CCWWGG	3 cut(s)	78, 198, 796
EcoT22I	ATGCAT	2 cut(s)	761, 1105
ErhI	CCWWGG	3 cut(s)	78, 198, 796
Esp3I	CGTCTC	1 cut(s)	300
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 127, 159
FaqI	GGGAC	1 cut(s)	152
FauNDI	CATATG	1 cut(s)	678
Fnu4HI	GCNGC	3 cut(s)	462, 825, 987
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	462, 825, 987
FspBI	CTAG	2 cut(s)	87, 102
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	3 cut(s)	462, 825, 987
GsaI	CCCAGC	1 cut(s)	933
HaeII	RGCGCY	1 cut(s)	87
HapII	CCGG	2 cut(s)	339, 861
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	2 cut(s)	30, 1123
HpaII	CCGG	2 cut(s)	339, 861
HphI	GGTGA	3 cut(s)	605, 726, 1151
Hpy166II	GTNNAC	4 cut(s)	194, 423, 748, 1091
Hpy188I	TCNGA	1 cut(s)	841
Hpy188III	TCNNGA	4 cut(s)	1111, 1117, 1225, 1247
Hpy8I	GTNNAC	4 cut(s)	194, 423, 748, 1091
HpyAV	CCTTC	4 cut(s)	467, 1016, 1104, 1177
HpyCH4III	ACNGT	3 cut(s)	742, 953, 1055
HpyCH4IV	ACGT	2 cut(s)	246, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 355, 443, 587, 821
HpyF3I	CTNAG	6 cut(s)	67, 816, 828, 840, 990, 1127
HpySE526I	ACGT	2 cut(s)	246, 647
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	598, 766, 792, 957, 1113
Lsp1109I	GCAGC	2 cut(s)	473, 836
LweI	GCATC	5 cut(s)	169, 265, 1074, 1112, 1175
MaeI	CTAG	2 cut(s)	87, 102
MaeII	ACGT	2 cut(s)	246, 647
MaeIII	GTNAC	3 cut(s)	316, 643, 732
MalI	GATC	5 cut(s)	600, 768, 794, 959, 1115
MboI	GATC	5 cut(s)	598, 766, 792, 957, 1113
MboII	GAAGA	8 cut(s)	27, 373, 423, 877, 974, 982, 1132, 1171
MflI	RGATCY	1 cut(s)	792
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	7 cut(s)	211, 231, 426, 891, 924, 944, 1250
MmeI	TCCRAC	2 cut(s)	851, 889
MnlI	CCTC	9 cut(s)	19, 300, 307, 358, 361, 547, 725, 811, 1038
Mph1103I	ATGCAT	2 cut(s)	761, 1105
MroXI	GAANNNNTTC	1 cut(s)	707
MseI	TTAA	3 cut(s)	215, 573, 662
MslI	CAYNNNNRTG	2 cut(s)	591, 1053
MspI	CCGG	2 cut(s)	339, 861
MspR9I	CCNGG	2 cut(s)	340, 862
Mva1269I	GAATGC	1 cut(s)	119
MvnI	CGCG	1 cut(s)	986
MwoI	GCNNNNNNNGC	5 cut(s)	83, 355, 443, 587, 821
NciI	CCSGG	2 cut(s)	340, 862
NcoI	CCATGG	2 cut(s)	198, 796
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	5 cut(s)	598, 766, 792, 957, 1113
NlaIV	GGNNCC	3 cut(s)	632, 794, 1049
NmuCI	GTSAC	1 cut(s)	732
NsiI	ATGCAT	2 cut(s)	761, 1105
NspI	RCATGY	3 cut(s)	491, 553, 1213
OliI	CACNNNNGTG	1 cut(s)	1053
PaeI	GCATGC	1 cut(s)	491
PagI	TCATGA	1 cut(s)	1116
PaqCI	CACCTGC	2 cut(s)	472, 581
PciI	ACATGT	2 cut(s)	549, 1209
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	2 cut(s)	30, 1123
PkrI	GCNGC	3 cut(s)	463, 826, 988
PscI	ACATGT	2 cut(s)	549, 1209
PspFI	CCCAGC	1 cut(s)	929
PspN4I	GGNNCC	3 cut(s)	632, 794, 1049
PsuI	RGATCY	1 cut(s)	792
RsaI	GTAC	1 cut(s)	1177
RsaNI	GTAC	1 cut(s)	1176
RseI	CAYNNNNRTG	2 cut(s)	591, 1053
SaqAI	TTAA	3 cut(s)	215, 573, 662
SatI	GCNGC	3 cut(s)	462, 825, 987
Sau3AI	GATC	5 cut(s)	598, 766, 792, 957, 1113
ScrFI	CCNGG	2 cut(s)	340, 862
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	5 cut(s)	169, 265, 1074, 1112, 1175
SmiI	ATTTAAAT	1 cut(s)	216
SmiMI	CAYNNNNRTG	2 cut(s)	591, 1053
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SphI	GCATGC	1 cut(s)	491
Sse9I	AATT	7 cut(s)	211, 231, 426, 891, 924, 944, 1250
SsiI	CCGC	1 cut(s)	986
SspMI	CTAG	2 cut(s)	87, 102
StyD4I	CCNGG	2 cut(s)	338, 860
StyI	CCWWGG	3 cut(s)	78, 198, 796
SwaI	ATTTAAAT	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	742, 953, 1055
TaiI	ACGT	2 cut(s)	249, 650
TaqI	TCGA	2 cut(s)	329, 960
TasI	AATT	7 cut(s)	211, 231, 426, 891, 924, 944, 1250
TatI	WGTACW	1 cut(s)	1175
TauI	GCSGC	1 cut(s)	989
TfiI	GAWTC	2 cut(s)	30, 1123
Tru1I	TTAA	3 cut(s)	215, 573, 662
Tru9I	TTAA	3 cut(s)	215, 573, 662
TscAI	CASTG	2 cut(s)	46, 1060
TseFI	GTSAC	1 cut(s)	732
TseI	GCWGC	2 cut(s)	461, 824
Tsp45I	GTSAC	1 cut(s)	732
TspDTI	ATGAA	8 cut(s)	17, 224, 744, 892, 998, 1050, 1133, 1172
TspRI	CASTG	2 cut(s)	46, 1060
VneI	GTGCAC	1 cut(s)	192
XapI	RAATTY	3 cut(s)	211, 891, 1250
XceI	RCATGY	3 cut(s)	491, 553, 1213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1226
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	2 cut(s)	87, 102
Zsp2I	ATGCAT	2 cut(s)	761, 1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.