Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001522.1

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Reverse (-)

32292 .. 33854

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001522.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

atgagaaccttaaggagatacaaggaaggattgtttaacagtagcacagctcagatatattgtagaaaattctcagccattggcaatgctaaagctgatagacccagagaccaagaatgccttgtttggttgggcacaagtgccactcatatatcgcttttgcatcaaatcttgcaaagcagtgcaagaacaggtgcacctatggaaggaaaggcctgccatgcacagagtattcgtgttggattacaatcggacactttaacgtctaacatgcttattaacatgtattcaaaatgtggcttccataattgcgctagaaaagtgtttgatgaaatgcctgaaaggagcttagtttcatggaatactatgattgggtcacttgcccggaatggggaggaacaagaagctcttagtgttttcgtacgtatgcaaagagaagaaaaccaatttagtgaattcactgtttcaagtgttcttttcgcttgtgctgcgaaatgtgctgtgtctgagtgtaaacagcttcatgcttttgctattaaggtagcaatggttttgaatgtctatgtggggactgcattgcttgacgtttattcaaaggctggattgataaaggacgcaagttttgtttttgagtcgatgccagagaggagtgatgtcacgtggagttcaatggttgctgggtatgtgcaaaatgggctctatgaggaggctttggtgttgctccacagagctcaaatgataggactagaacataaccagtttacaatctcttctgctatttgtgcttgtgcaggcctggcagctttgatacaagggaagcaagtgcatgccttgttgtttaaaactggattcggtttaaatatctatatcgtttcctctctgatagacatgtattcaaaatgtggtagcattggagaagcatacaccgtgtttcaaggtatggaggacaggaacactattttgtggaatgccatgatttctgggttttctagacatgcttgctccctagaggtgatgatcttatttgagaaaatgcagcagacaggtatgctcccaagtgaagtagcatatatatctgtattaactgcttgtagtcatatgggattggttgaaagtggaaggaaatatttcaacctcatgataacagaacacaatgtgtccccaaatgttgttcaccatgcatgcatggttgatattttaggtcggtcaggattgattcttgaagcccataatttgattgagaatatgccatttgatgctactgcttctatgtggggttcattgttagcttcttgtaggatccatggaaattttcatttagctgagatagcagctaagcatttgtctgagatagaaccgaacagtgcagggaacctcattttgttgtcaaatatttatgcagcaaataataagtgggaggaggttgcaagaacaaggaagcttcttaaagaaagtgagttgaagaaggaaagagggaagagttggattgaaatcaaggacaaagttcactcatttatggtcggagagagaaaacatcccagaattgctgagatatactcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

520

Amino Acids

57.87

Weight (kDa)

7.88

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	1294, 1307
AcsI	RAATTY	3 cut(s)	68, 455, 1309
AcvI	CACGTG	1 cut(s)	660
AdeI	CACNNNGTG	1 cut(s)	1156
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	3 cut(s)	206, 390, 391
AflII	CTTAAG	1 cut(s)	10
AflIII	ACRYGT	2 cut(s)	282, 888
AjnI	CCWGG	1 cut(s)	795
Alw21I	GWGCWC	2 cut(s)	199, 733
Alw26I	GTCTC	1 cut(s)	102
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	1294, 1307
AoxI	GGCC	2 cut(s)	213, 793
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	5 cut(s)	488, 800, 1036, 1331, 1400
ApoI	RAATTY	3 cut(s)	68, 455, 1309
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
Asp700I	GAANNNNTTC	1 cut(s)	1127
AspLEI	GCGC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	1024, 1166
BaeGI	GKGCMC	2 cut(s)	137, 199
BamHI	GGATCC	1 cut(s)	1299
BanII	GRGCYC	2 cut(s)	699, 733
BbrPI	CACGTG	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	199, 733
BbvI	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
BciT130I	CCWGG	1 cut(s)	797
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	4 cut(s)	315, 746, 990, 1007
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
BlpI	GCTNAGC	1 cut(s)	1335
BlsI	GCNGC	5 cut(s)	490, 802, 1038, 1333, 1402
Bme1390I	CCNGG	2 cut(s)	385, 797
BmiI	GGNNCC	2 cut(s)	1301, 1373
BmrFI	CCNGG	2 cut(s)	385, 797
BmsI	GCATC	3 cut(s)	172, 627, 1246
BplI	GAGNNNNNCTC	1 cut(s)	1541
Bpu1102I	GCTNAGC	1 cut(s)	1335
BpuMI	CCSGG	1 cut(s)	385
BsaAI	YACGTR	2 cut(s)	425, 660
BsaBI	GATNNNNATC	2 cut(s)	247, 1490
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	1303
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 390, 391
Bse1I	ACTGG	2 cut(s)	757, 850
Bse3DI	GCAATG	3 cut(s)	91, 552, 575
Bse8I	GATNNNNATC	2 cut(s)	247, 1490
BseBI	CCWGG	1 cut(s)	797
BseDI	CCNNGG	1 cut(s)	1303
BseGI	GGATG	1 cut(s)	1534
BseJI	GATNNNNATC	2 cut(s)	247, 1490
BseLI	CCNNNNNNNGG	3 cut(s)	206, 390, 391
BseMI	GCAATG	3 cut(s)	91, 552, 575
BseMII	CTCAG	6 cut(s)	65, 87, 498, 1314, 1338, 1539
BseNI	ACTGG	2 cut(s)	757, 850
BseRI	GAGGAG	3 cut(s)	661, 719, 1433
BseSI	GKGCMC	2 cut(s)	137, 199
BseXI	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	2 cut(s)	810, 1386
BshFI	GGCC	2 cut(s)	215, 795
BsiHKAI	GWGCWC	2 cut(s)	199, 733
BsiSI	CCGG	1 cut(s)	385
BsiWI	CGTACG	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	583, 1144
BslI	CCNNNNNNNGG	3 cut(s)	206, 390, 391
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	583, 1144
BsmI	GAATGC	2 cut(s)	122, 973
BsnI	GGCC	2 cut(s)	215, 795
Bso31I	GGTCTC	1 cut(s)	102
Bsp1286I	GDGCHC	4 cut(s)	137, 199, 699, 733
Bsp143I	GATC	2 cut(s)	1017, 1299
Bsp1720I	GCTNAGC	1 cut(s)	1335
Bsp19I	CCATGG	1 cut(s)	1303
BspANI	GGCC	2 cut(s)	215, 795
BspCNI	CTCAG	6 cut(s)	64, 86, 499, 1315, 1339, 1540
BspHI	TCATGA	1 cut(s)	1137
BspLI	GGNNCC	2 cut(s)	1301, 1373
BspPI	GGATC	2 cut(s)	1294, 1307
BspTI	CTTAAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	3 cut(s)	91, 552, 575
BsrI	ACTGG	2 cut(s)	757, 850
BssECI	CCNNGG	1 cut(s)	1303
BssMI	GATC	2 cut(s)	1017, 1299
BssT1I	CCWWGG	1 cut(s)	1303
Bst2UI	CCWGG	1 cut(s)	797
Bst4CI	ACNGT	4 cut(s)	41, 463, 928, 1364
Bst6I	CTCTTC	2 cut(s)	775, 1472
BstAFI	CTTAAG	1 cut(s)	10
BstBAI	YACGTR	2 cut(s)	425, 660
BstC8I	GCNNGC	5 cut(s)	217, 793, 828, 1000, 1183
BstDEI	CTNAG	9 cut(s)	51, 73, 349, 410, 507, 1323, 1335, 1347, 1548
BstDSI	CCRYGG	1 cut(s)	1303
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	1534
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	2 cut(s)	1020, 1302
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	1017, 1299
BstMWI	GCNNNNNNNGC	7 cut(s)	221, 488, 497, 694, 782, 797, 1328
BstNI	CCWGG	1 cut(s)	797
BstNSI	RCATGY	6 cut(s)	274, 286, 830, 892, 998, 1185
BstSCI	CCNGG	2 cut(s)	383, 795
BstSLI	GKGCMC	2 cut(s)	137, 199
BstSNI	TACGTA	1 cut(s)	425
BstV1I	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
BstX2I	RGATCY	1 cut(s)	1299
BstYI	RGATCY	1 cut(s)	1299
BsuRI	GGCC	2 cut(s)	215, 795
BtgI	CCRYGG	1 cut(s)	1303
BtsCI	GGATG	1 cut(s)	1534
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	187, 459, 1369
Cac8I	GCNNGC	5 cut(s)	217, 793, 828, 1000, 1183
CciI	TCATGA	1 cut(s)	1137
CfoI	GCGC	1 cut(s)	314
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	422
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	9 cut(s)	51, 73, 349, 410, 507, 1323, 1335, 1347, 1548
DpnI	GATC	2 cut(s)	1019, 1301
DpnII	GATC	2 cut(s)	1017, 1299
DraI	TTTAAA	2 cut(s)	841, 858
DraIII	CACNNNGTG	1 cut(s)	1156
Eam1104I	CTCTTC	2 cut(s)	775, 1472
EarI	CTCTTC	2 cut(s)	775, 1472
Ecl136II	GAGCTC	1 cut(s)	731
Eco105I	TACGTA	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	1303
Eco147I	AGGCCT	2 cut(s)	215, 795
Eco24I	GRGCYC	2 cut(s)	699, 733
Eco31I	GGTCTC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	731
Eco72I	CACGTG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	731
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	795
EcoT14I	CCWWGG	1 cut(s)	1303
EcoT22I	ATGCAT	2 cut(s)	1183, 1187
EcoT38I	GRGCYC	2 cut(s)	699, 733
ErhI	CCWWGG	1 cut(s)	1303
FalI	AAGNNNNNCTT	4 cut(s)	105, 137, 393, 425
FaqI	GGGAC	2 cut(s)	583, 1144
FauNDI	CATATG	1 cut(s)	1098
Fnu4HI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
FokI	GGATG	1 cut(s)	1521
FriOI	GRGCYC	2 cut(s)	699, 733
Fsp4HI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
FspBI	CTAG	4 cut(s)	315, 746, 990, 1007
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
GsaI	CCCAGC	1 cut(s)	681
HaeIII	GGCC	2 cut(s)	215, 795
HapII	CCGG	1 cut(s)	385
HgaI	GACGC	1 cut(s)	623
HhaI	GCGC	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	1439
HinfI	GANTC	3 cut(s)	632, 849, 1216
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	2 cut(s)	1024, 1166
Hpy166II	GTNNAC	5 cut(s)	197, 515, 762, 1174, 1507
Hpy188I	TCNGA	6 cut(s)	54, 253, 508, 882, 1348, 1523
Hpy188III	TCNNGA	4 cut(s)	990, 1138, 1209, 1220
Hpy8I	GTNNAC	5 cut(s)	197, 515, 762, 1174, 1507
HpyAV	CCTTC	4 cut(s)	20, 200, 1113, 1459
HpyCH4III	ACNGT	4 cut(s)	41, 463, 928, 1364
HpyCH4IV	ACGT	4 cut(s)	263, 424, 585, 659
HpyF10VI	GCNNNNNNNGC	7 cut(s)	221, 488, 497, 694, 782, 797, 1328
HpyF3I	CTNAG	9 cut(s)	51, 73, 349, 410, 507, 1323, 1335, 1347, 1548
HpySE526I	ACGT	4 cut(s)	263, 424, 585, 659
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	1017, 1299
LmnI	GCTCC	4 cut(s)	345, 726, 1007, 1056
Lsp1109I	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
LweI	GCATC	3 cut(s)	172, 627, 1246
MaeI	CTAG	4 cut(s)	315, 746, 990, 1007
MaeII	ACGT	4 cut(s)	263, 424, 585, 659
MaeIII	GTNAC	2 cut(s)	375, 655
MalI	GATC	2 cut(s)	1019, 1301
MboI	GATC	2 cut(s)	1017, 1299
MboII	GAAGA	4 cut(s)	449, 762, 1474, 1489
MflI	RGATCY	1 cut(s)	1299
MhlI	GDGCHC	4 cut(s)	137, 199, 699, 733
MluCI	AATT	7 cut(s)	68, 307, 446, 455, 1231, 1309, 1542
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	3 cut(s)	220, 1463, 1501
Mph1103I	ATGCAT	2 cut(s)	1183, 1187
MroXI	GAANNNNTTC	1 cut(s)	1127
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	2 cut(s)	385, 797
Mva1269I	GAATGC	2 cut(s)	122, 973
MvaI	CCWGG	1 cut(s)	797
MwoI	GCNNNNNNNGC	7 cut(s)	221, 488, 497, 694, 782, 797, 1328
NciI	CCSGG	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	1303
NdeI	CATATG	1 cut(s)	1098
NdeII	GATC	2 cut(s)	1017, 1299
NlaIV	GGNNCC	2 cut(s)	1301, 1373
NmuCI	GTSAC	2 cut(s)	375, 655
NsiI	ATGCAT	2 cut(s)	1183, 1187
NspI	RCATGY	6 cut(s)	274, 286, 830, 892, 998, 1185
PaeI	GCATGC	2 cut(s)	830, 1185
PagI	TCATGA	1 cut(s)	1137
PceI	AGGCCT	2 cut(s)	215, 795
PciI	ACATGT	2 cut(s)	282, 888
PctI	GAATGC	2 cut(s)	122, 973
PdmI	GAANNNNTTC	1 cut(s)	1127
PfeI	GAWTC	2 cut(s)	849, 1216
Pfl23II	CGTACG	1 cut(s)	421
PkrI	GCNGC	5 cut(s)	490, 802, 1038, 1333, 1402
PleI	GAGTC	1 cut(s)	640
PmaCI	CACGTG	1 cut(s)	660
PmlI	CACGTG	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	640
Ppu21I	YACGTR	2 cut(s)	425, 660
PscI	ACATGT	2 cut(s)	282, 888
Psp124BI	GAGCTC	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	795
PspCI	CACGTG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	795
PspLI	CGTACG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	1301, 1373
PsuI	RGATCY	1 cut(s)	1299
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	733
SatI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
Sau3AI	GATC	2 cut(s)	1017, 1299
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	2 cut(s)	385, 797
SduI	GDGCHC	4 cut(s)	137, 199, 699, 733
SfaNI	GCATC	3 cut(s)	172, 627, 1246
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SnaBI	TACGTA	1 cut(s)	425
SphI	GCATGC	2 cut(s)	830, 1185
Sse9I	AATT	7 cut(s)	68, 307, 446, 455, 1231, 1309, 1542
SseBI	AGGCCT	2 cut(s)	215, 795
SspI	AATATT	2 cut(s)	1127, 1393
SspMI	CTAG	4 cut(s)	315, 746, 990, 1007
SstI	GAGCTC	1 cut(s)	733
StuI	AGGCCT	2 cut(s)	215, 795
StyD4I	CCNGG	2 cut(s)	383, 795
StyI	CCWWGG	1 cut(s)	1303
TaaI	ACNGT	4 cut(s)	41, 463, 928, 1364
TaiI	ACGT	4 cut(s)	266, 427, 588, 662
TaqI	TCGA	1 cut(s)	635
TaqII	GACCGA	1 cut(s)	1194
TasI	AATT	7 cut(s)	68, 307, 446, 455, 1231, 1309, 1542
TfiI	GAWTC	2 cut(s)	849, 1216
TscAI	CASTG	3 cut(s)	187, 466, 1369
TseFI	GTSAC	2 cut(s)	375, 655
TseI	GCWGC	5 cut(s)	488, 800, 1036, 1331, 1400
Tsp45I	GTSAC	2 cut(s)	375, 655
TspDTI	ATGAA	5 cut(s)	345, 345, 512, 1269, 1304
TspRI	CASTG	3 cut(s)	187, 466, 1369
Vha464I	CTTAAG	1 cut(s)	10
VneI	GTGCAC	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	3 cut(s)	68, 455, 1309
XbaI	TCTAGA	1 cut(s)	989
XceI	RCATGY	6 cut(s)	274, 286, 830, 892, 998, 1185
XmnI	GAANNNNTTC	1 cut(s)	1127
XspI	CTAG	4 cut(s)	315, 746, 990, 1007
Zsp2I	ATGCAT	2 cut(s)	1183, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.