Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Forward (+)

4806800 .. 4808032

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0028400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAGCTTTTTTTTTTTGTTGTTGTAAATTTTGTTACTTTTGTTCTAGTAGACCAAAACAAGCCATGCCCTTTTTGTGTTGGAGCCACAGTTGTACCTGACCCGCTTGTTTCTTCCATGTCTGCCCCTCTTCCCCCACCAAGCTTCTCACCCACTTCCCCAATTGCTTCATCAATGGCTTCCTTCTCTCCAGGAATTCAACAAGGAAGTGAAGGAAATCAAATGGATTCGCATAAGAAACCGCTCATTGCCCTCATTGTGACTTGTGCAACACTTGGTGCAGTTTTGTTGTCACTATTGTGTTTGTGGTTTTATCACAGCAAGTACAAGTTCCTTAAGAGAAATGCTCAGAGCTCAGATGCCGAGAAGGAGCTGGCATTGTCTCCATTTTTTGGTAAATTCAATTCCATAAAGATGGTTGGAAACAAAGGGTCTGTGACAGTAATTGAGTATAAGCTAATAGAAAAGGGCACTAGCAATTTTCGGGAGAGTAATATCTTGGGCGAGGGTGGATTTGGATGCGTTTACCGGGCTCGTTTGGATGATAGTTTGATTGTTGCTGTCAAGAAACTGGACTGTGCTACTGAGGATGCTGAAAAAGAATTTGAGGTACTGGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

207

Amino Acids

22.53

Weight (kDa)

7.56

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	2 cut(s)	104, 242
AcsI	RAATTY	4 cut(s)	28, 195, 398, 602
AdeI	CACNNNGTG	1 cut(s)	278
AfaI	GTAC	3 cut(s)	96, 326, 612
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	200, 403
AjnI	CCWGG	1 cut(s)	190
AleI	CACNNNNGTG	1 cut(s)	298
AluBI	AGCT	5 cut(s)	7, 144, 354, 373, 457
AluI	AGCT	5 cut(s)	7, 144, 354, 373, 457
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	1 cut(s)	387
ApoI	RAATTY	4 cut(s)	28, 195, 398, 602
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	473
BaeI	ACNNNNGTAYC	2 cut(s)	78, 111
BanII	GRGCYC	2 cut(s)	356, 535
Bbv12I	GWGCWC	1 cut(s)	356
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	2 cut(s)	47, 474
BfrI	CTTAAG	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	192, 530
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	192, 530
BmsI	GCATC	3 cut(s)	349, 509, 580
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
BpmI	CTGGAG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	530
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	576, 618
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	192
BseGI	GGATG	3 cut(s)	524, 547, 595
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	3 cut(s)	362, 369, 576
BseNI	ACTGG	2 cut(s)	576, 618
BseSI	GKGCMC	1 cut(s)	473
BsgI	GTGCAG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	529
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	387
Bsp1286I	GDGCHC	3 cut(s)	356, 473, 535
BspACI	CCGC	2 cut(s)	104, 242
BspCNI	CTCAG	3 cut(s)	361, 368, 577
BspLI	GGNNCC	1 cut(s)	85
BspTI	CTTAAG	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	576, 618
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	91, 442, 578
Bst6I	CTCTTC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	348, 355, 585
BstF5I	GGATG	3 cut(s)	524, 547, 595
BstMAI	GTCTC	1 cut(s)	387
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	190, 528
BstSLI	GKGCMC	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	524, 547, 595
Cac8I	GCNNGC	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	95, 325, 611
CviAII	CATG	2 cut(s)	66, 118
CviJI	RGCY	9 cut(s)	7, 64, 86, 144, 179, 354, 373, 457, 533
CviKI_1	RGCY	9 cut(s)	7, 64, 86, 144, 179, 354, 373, 457, 533
CviQI	GTAC	3 cut(s)	95, 325, 611
DdeI	CTNAG	3 cut(s)	348, 355, 585
DraIII	CACNNNGTG	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	354
Eco24I	GRGCYC	2 cut(s)	356, 535
Eco53kI	GAGCTC	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	354
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	190
EcoT38I	GRGCYC	2 cut(s)	356, 535
FaeI	CATG	2 cut(s)	69, 121
FaiI	YATR	5 cut(s)	67, 119, 234, 410, 453
FatI	CATG	2 cut(s)	65, 117
FauI	CCCGC	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	51
FokI	GGATG	3 cut(s)	531, 554, 602
FriOI	GRGCYC	2 cut(s)	356, 535
FspBI	CTAG	2 cut(s)	47, 474
GsuI	CTGGAG	1 cut(s)	174
HapII	CCGG	1 cut(s)	529
Hin1II	CATG	2 cut(s)	69, 121
HindIII	AAGCTT	2 cut(s)	5, 142
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	529
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	2 cut(s)	52, 526
Hpy188I	TCNGA	2 cut(s)	351, 358
Hpy188III	TCNNGA	2 cut(s)	485, 565
Hpy8I	GTNNAC	2 cut(s)	52, 526
HpyAV	CCTTC	3 cut(s)	193, 206, 361
HpyCH4III	ACNGT	3 cut(s)	91, 442, 578
HpyCH4V	TGCA	2 cut(s)	269, 281
HpyF3I	CTNAG	3 cut(s)	348, 355, 585
Hsp92II	CATG	2 cut(s)	69, 121
LmnI	GCTCC	2 cut(s)	83, 370
LpnPI	CCDG	7 cut(s)	111, 177, 204, 359, 542, 557, 599
LweI	GCATC	3 cut(s)	349, 509, 580
MaeI	CTAG	2 cut(s)	47, 474
MaeIII	GTNAC	4 cut(s)	34, 259, 291, 436
MbiI	CCGCTC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	105, 122
MfeI	CAATTG	1 cut(s)	162
MhlI	GDGCHC	3 cut(s)	356, 473, 535
MluCI	AATT	8 cut(s)	28, 162, 195, 398, 403, 444, 478, 602
MmeI	TCCRAC	2 cut(s)	61, 400
MnlI	CCTC	5 cut(s)	138, 263, 499, 580, 601
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	298, 413
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	1 cut(s)	529
MspR9I	CCNGG	2 cut(s)	192, 530
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	192
NciI	CCSGG	1 cut(s)	530
NlaIII	CATG	2 cut(s)	69, 121
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	3 cut(s)	259, 291, 436
OliI	CACNNNNGTG	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	392
PfoI	TCCNGGA	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	85
RsaI	GTAC	3 cut(s)	96, 326, 612
RsaNI	GTAC	3 cut(s)	95, 325, 611
RseI	CAYNNNNRTG	2 cut(s)	298, 413
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	192, 530
SduI	GDGCHC	3 cut(s)	356, 473, 535
SetI	ASST	7 cut(s)	9, 100, 146, 356, 375, 459, 612
SfaNI	GCATC	3 cut(s)	349, 509, 580
SmiMI	CAYNNNNRTG	2 cut(s)	298, 413
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	8 cut(s)	28, 162, 195, 398, 403, 444, 478, 602
SsiI	CCGC	2 cut(s)	104, 242
SspMI	CTAG	2 cut(s)	47, 474
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	190, 528
TaaI	ACNGT	3 cut(s)	91, 442, 578
TasI	AATT	8 cut(s)	28, 162, 195, 398, 403, 444, 478, 602
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseFI	GTSAC	3 cut(s)	259, 291, 436
Tsp45I	GTSAC	3 cut(s)	259, 291, 436
TspDTI	ATGAA	2 cut(s)	17, 159
Van91I	CCANNNNNTGG	1 cut(s)	392
Vha464I	CTTAAG	1 cut(s)	335
XapI	RAATTY	4 cut(s)	28, 195, 398, 602
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	2 cut(s)	47, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.