FvH4_7g02560

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
2835038 .. 2839651
4614 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02560.t2

Sequence Viewer

Length: 1494 bp
ATGGCGGCAACTTTGTTTCGGGTGGTGGGGGTCGCCGTTTTATTATTATTGCTGCAGTTTGTGACGGTGGTGCTGTGCAGTTTCCCGGCGACGCTGACCCTGGAGAGATCTTTTCCGACGAATCATAAGGTGGAACTGAGTCAGCTGAGAGCCCGAGACCGTCTCAGGCATGGCAGGGTGTTGAGTGGTGTTGTTGATTTTCCTGTGGGAGGCACCTTCAATCCATACTTAGTCGGGCTATACTTTACAAGCGTCAAACTCGGCACTCCTGCAACAGAATTCTATGTGCAGATTGATACCGGAAGTGATGTTTTATGGGTTGGTTGCAATTCCTGTTCCGGTTGCCCCCAATCCTCCGGACTTAAAATTCAGCTCCATTCTTTTGAACCTCAGAGCTCATCAACTGCTTCGGTGGTCTCCTGTTCTGATAAAATGTGTACTCTTGGACTTGATACACAAGATTCTAGCTGTGACTCACAAAAGAAGCAGTGTACTTACGCATTCCAATATGGAGATGGGAGTGGGGCATCAGGGTATTATGTGTCCGACTTATTACATTTTGATACAGCAGCCGATAATCAGTCTGTGGCATCGAATTCTTCAGCTTCCATAGTCTTTGGGTGTAGCACGTCAGCAAGCGGGGTGTTGCAGAAAACAGATAGAGCAGTTGATGGGATTTTCGGATTTGGGCAGCAGGAATTGTCTGTCATCTCACAGCTGTCTTCACAAGGAATAACTCCAAAAGTATTTTCTCATTGCTTGAAAGGAGATGACAGTGGCGGGGGAATATTGGTTCTTGGTGAGATCGTGGAACCTAACATTGTTTATAGCCCACTAGTTCAAAATCAGGCTCATTATAACTTAAATCTGGAGAGCATTAGTGTTAGTGGTCAAACATTACCAATTGATCAATCAGTCTTTGAAACTTCAAGCAACCAAGGAACGATAATTGATTCTGGGACGACTTTGTCATACCTTGCAGAGGATGCCTATGATCCTTTTGTCACTGCAATTACAAGTGCCGTTTCACAGTCTGTGACTCCTGTTACTTCTCAGGGAGAACAATGTTACATAGTCACCTCCAGCATCAGTGATGCATTTCCCCAAGTTAGTTTGAACTTTGCCGGTAATGCATCCATGATATTAAGACCTGAGGACTACCTGTTGCAGCAGAATTCTGTAAGTGGTGCTCAAGTATGGTGCATTGGCATTCAAAAAAGTGAGGGTCAAGATATAACTGTATTGGGAGACCTCGTCCTAAAAGACAAGATCATTGTCTATGACTTGGCTAATCAACGTATTGGTTGGGTTCAATACGACTGTTCAATGTCAGTCAGCGTTTCTTCAAATACTAGCACCGGAACTGCATCTGTTAATGGAGGGTCCATAGATGTCAATGTTAGCAGCAGTGGCTCACTGAGGATTGACCCTTTCAATTTGATACCGATAAGCATGATGTTCGCCTTCCTTGTTCACATATATATCAATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

52.96

Weight (kDa)

4.63

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 25 - 211 3.2e-42 Xylanase inhibitor N-terminal
Asp PF00026 25 - 380 7.7e-32 Eukaryotic aspartyl protease
TAXi_C PF14541 229 - 380 4.3e-28 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
AasI GACNNNNNNGTC 1 cut(s) 967
AccB1I GGYRCC 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 3 cut(s) 5, 639, 780
AclWI GGATC 1 cut(s) 989
AcsI RAATTY 4 cut(s) 278, 366, 595, 1174
AcuI CTGAAG 1 cut(s) 585
AfaI GTAC 2 cut(s) 439, 493
AfiI CCNNNNNNNGG 2 cut(s) 209, 982
AhlI ACTAGT 1 cut(s) 835
AjiI CACGTC 1 cut(s) 630
AjnI CCWGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 733, 765
AloI GAACNNNNNNTCC 2 cut(s) 777, 809
AluBI AGCT 6 cut(s) 145, 373, 396, 468, 605, 718
AluI AGCT 6 cut(s) 145, 373, 396, 468, 605, 718
Alw21I GWGCWC 2 cut(s) 398, 1192
Alw26I GTCTC 4 cut(s) 150, 167, 421, 1242
AlwI GGATC 1 cut(s) 989
Ama87I CYCGRG 1 cut(s) 153
Aor13HI TCCGGA 1 cut(s) 356
ApeKI GCWGC 5 cut(s) 52, 569, 691, 1168, 1404
ApoI RAATTY 4 cut(s) 278, 366, 595, 1174
AspS9I GGNCC 1 cut(s) 1383
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 812, 1069
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 1383
AxyI CCTNAGG 1 cut(s) 1152
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 2 cut(s) 154, 398
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 398, 1192
BbvI GCAGC 5 cut(s) 39, 581, 703, 1180, 1416
BccI CCATC 2 cut(s) 509, 665
BceAI ACGGC 2 cut(s) 20, 1007
BcgI CGANNNNNNTGC 2 cut(s) 1441, 1475
BciT130I CCWGG 1 cut(s) 101
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 4 cut(s) 150, 167, 421, 1242
BcuI ACTAGT 1 cut(s) 835
BfaI CTAG 3 cut(s) 465, 836, 1353
BfmI CTRYAG 1 cut(s) 53
BglII AGATCT 1 cut(s) 107
BisI GCNGC 6 cut(s) 6, 53, 570, 692, 1169, 1405
BlsI GCNGC 6 cut(s) 7, 54, 571, 693, 1170, 1406
Bme1390I CCNGG 2 cut(s) 86, 101
Bme18I GGWCC 1 cut(s) 1383
BmeT110I CYCGRG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 630
BmgT120I GGNCC 1 cut(s) 1383
BmiI GGNNCC 3 cut(s) 214, 813, 1384
BmrFI CCNGG 2 cut(s) 86, 101
BmsI GCATC 7 cut(s) 536, 599, 976, 1084, 1095, 1142, 1376
BpiI GAAGAC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 147, 179
BpmI CTGGAG 3 cut(s) 122, 890, 1066
BpuEI CTTGAG 1 cut(s) 1176
BpuMI CCSGG 1 cut(s) 86
BsaI GGTCTC 3 cut(s) 150, 421, 1242
BsaJI CCNNGG 2 cut(s) 99, 937
BsaWI WCCGGW 4 cut(s) 299, 338, 356, 1358
BsaXI ACNNNNNCTCC 2 cut(s) 1239, 1269
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 982
Bse118I RCCGGY 1 cut(s) 1124
Bse21I CCTNAGG 1 cut(s) 1152
Bse3DI GCAATG 1 cut(s) 754
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 99, 937
BseGI GGATG 2 cut(s) 991, 1133
BseLI CCNNNNNNNGG 2 cut(s) 209, 982
BseMI GCAATG 1 cut(s) 754
BseMII CTCAG 7 cut(s) 128, 137, 178, 404, 1067, 1143, 1409
BseXI GCAGC 5 cut(s) 39, 581, 703, 1180, 1416
BsgI GTGCAG 2 cut(s) 97, 308
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 398, 1192
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 6 cut(s) 86, 300, 339, 357, 1125, 1359
BslFI GGGAC 1 cut(s) 973
BslI CCNNNNNNNGG 2 cut(s) 209, 982
BsmAI GTCTC 4 cut(s) 150, 167, 421, 1242
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 973
BsmI GAATGC 2 cut(s) 500, 1209
Bso31I GGTCTC 3 cut(s) 150, 421, 1242
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 3 cut(s) 154, 398, 1192
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 5 cut(s) 107, 804, 907, 994, 1269
BspACI CCGC 3 cut(s) 5, 639, 780
BspCNI CTCAG 7 cut(s) 129, 138, 177, 403, 1066, 1144, 1410
BspEI TCCGGA 1 cut(s) 356
BspLI GGNNCC 3 cut(s) 214, 813, 1384
BspMAI CTGCAG 1 cut(s) 57
BspPI GGATC 1 cut(s) 989
BspT107I GGYRCC 1 cut(s) 212
BspTNI GGTCTC 3 cut(s) 150, 421, 1242
BsrDI GCAATG 1 cut(s) 754
BsrFI RCCGGY 1 cut(s) 1124
BssAI RCCGGY 1 cut(s) 1124
BssECI CCNNGG 2 cut(s) 99, 937
BssMI GATC 5 cut(s) 107, 804, 907, 994, 1269
BssT1I CCWWGG 1 cut(s) 937
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 6 cut(s) 67, 161, 776, 1032, 1240, 1322
BstAPI GCANNNNNTGC 1 cut(s) 986
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 8 cut(s) 137, 146, 164, 229, 390, 1053, 1152, 1418
BstENI CCTNNNNNAGG 2 cut(s) 207, 980
BstF5I GGATG 2 cut(s) 991, 1133
BstKTI GATC 5 cut(s) 110, 807, 910, 997, 1272
BstMAI GTCTC 4 cut(s) 150, 167, 421, 1242
BstMBI GATC 5 cut(s) 107, 804, 907, 994, 1269
BstMWI GCNNNNNNNGC 3 cut(s) 986, 1130, 1410
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 84, 99
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 5 cut(s) 39, 581, 703, 1180, 1416
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
Bsu36I CCTNAGG 1 cut(s) 1152
BtrI CACGTC 1 cut(s) 630
BtsCI GGATG 2 cut(s) 991, 1133
BtsI GCAGTG 3 cut(s) 494, 1005, 1414
BtsIMutI CAGTG 6 cut(s) 494, 781, 1005, 1096, 1414, 1415
Cac8I GCNNGC 1 cut(s) 637
Cfr10I RCCGGY 1 cut(s) 1124
Cfr13I GGNCC 1 cut(s) 1383
CseI GACGC 2 cut(s) 100, 241
Csp6I GTAC 2 cut(s) 438, 492
CviAII CATG 3 cut(s) 170, 1138, 1453
CviQI GTAC 2 cut(s) 438, 492
DdeI CTNAG 8 cut(s) 137, 146, 164, 229, 390, 1053, 1152, 1418
DpnI GATC 5 cut(s) 109, 806, 909, 996, 1271
DpnII GATC 5 cut(s) 107, 804, 907, 994, 1269
DrdI GACNNNNNNGTC 1 cut(s) 967
DseDI GACNNNNNNGTC 1 cut(s) 967
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 937
Eco24I GRGCYC 2 cut(s) 154, 398
Eco31I GGTCTC 3 cut(s) 150, 421, 1242
Eco47I GGWCC 1 cut(s) 1383
Eco53kI GAGCTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 585
Eco81I CCTNAGG 1 cut(s) 1152
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 396
EcoNI CCTNNNNNAGG 2 cut(s) 207, 980
EcoRI GAATTC 3 cut(s) 278, 595, 1174
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 937
EcoT22I ATGCAT 2 cut(s) 1099, 1135
EcoT38I GRGCYC 2 cut(s) 154, 398
ErhI CCWWGG 1 cut(s) 937
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 3 cut(s) 173, 1141, 1456
FaqI GGGAC 1 cut(s) 973
FatI CATG 3 cut(s) 169, 1137, 1452
FauI CCCGC 2 cut(s) 632, 773
FbaI TGATCA 1 cut(s) 907
Fnu4HI GCNGC 6 cut(s) 6, 53, 570, 692, 1169, 1405
FokI GGATG 2 cut(s) 998, 1120
FriOI GRGCYC 2 cut(s) 154, 398
Fsp4HI GCNGC 6 cut(s) 6, 53, 570, 692, 1169, 1405
FspBI CTAG 3 cut(s) 465, 836, 1353
GluI GCNGC 6 cut(s) 6, 53, 570, 692, 1169, 1405
GsuI CTGGAG 3 cut(s) 122, 890, 1066
HapII CCGG 6 cut(s) 86, 300, 339, 357, 1125, 1359
HgaI GACGC 2 cut(s) 100, 241
Hin1II CATG 3 cut(s) 173, 1141, 1456
HinfI GANTC 6 cut(s) 121, 139, 461, 473, 953, 1039
HpaII CCGG 6 cut(s) 86, 300, 339, 357, 1125, 1359
HphI GGTGA 2 cut(s) 812, 1069
Hpy166II GTNNAC 3 cut(s) 438, 492, 1474
Hpy188I TCNGA 5 cut(s) 117, 393, 427, 547, 683
Hpy188III TCNNGA 3 cut(s) 357, 869, 1229
Hpy8I GTNNAC 3 cut(s) 438, 492, 1474
Hpy99I CGWCG 2 cut(s) 94, 121
HpyAV CCTTC 2 cut(s) 226, 1474
HpyCH4III ACNGT 6 cut(s) 67, 161, 776, 1032, 1240, 1322
HpyCH4IV ACGT 2 cut(s) 629, 1297
HpyF10VI GCNNNNNNNGC 3 cut(s) 986, 1130, 1410
HpyF3I CTNAG 8 cut(s) 137, 146, 164, 229, 390, 1053, 1152, 1418
HpySE526I ACGT 2 cut(s) 629, 1297
Hsp92II CATG 3 cut(s) 173, 1141, 1456
Kpn2I TCCGGA 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 5 cut(s) 107, 804, 907, 994, 1269
LmnI GCTCC 1 cut(s) 378
Lsp1109I GCAGC 5 cut(s) 39, 581, 703, 1180, 1416
LweI GCATC 7 cut(s) 536, 599, 976, 1084, 1095, 1142, 1376
MaeI CTAG 3 cut(s) 465, 836, 1353
MaeII ACGT 2 cut(s) 629, 1297
MaeIII GTNAC 7 cut(s) 61, 470, 1003, 1036, 1045, 1067, 1075
MalI GATC 5 cut(s) 109, 806, 909, 996, 1271
MboI GATC 5 cut(s) 107, 804, 907, 994, 1269
MboII GAAGA 3 cut(s) 591, 714, 1335
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 3 cut(s) 154, 398, 1192
MlyI GAGTC 3 cut(s) 148, 467, 1033
MmeI TCCRAC 2 cut(s) 140, 570
Mph1103I ATGCAT 2 cut(s) 1099, 1135
MroI TCCGGA 1 cut(s) 356
MseI TTAA 4 cut(s) 363, 863, 1145, 1374
MspA1I CMGCKG 2 cut(s) 145, 718
MspI CCGG 6 cut(s) 86, 300, 339, 357, 1125, 1359
MspR9I CCNGG 2 cut(s) 86, 101
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 2 cut(s) 500, 1209
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 3 cut(s) 986, 1130, 1410
NciI CCSGG 1 cut(s) 86
NdeII GATC 5 cut(s) 107, 804, 907, 994, 1269
NlaIII CATG 3 cut(s) 173, 1141, 1456
NlaIV GGNNCC 3 cut(s) 214, 813, 1384
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 5 cut(s) 61, 470, 1003, 1036, 1075
NsiI ATGCAT 2 cut(s) 1099, 1135
PctI GAATGC 2 cut(s) 500, 1209
PfeI GAWTC 3 cut(s) 121, 461, 953
PflFI GACNNNGTC 2 cut(s) 967, 1253
PkrI GCNGC 6 cut(s) 7, 54, 571, 693, 1170, 1406
PleI GAGTC 3 cut(s) 147, 467, 1033
PpsI GAGTC 3 cut(s) 147, 467, 1033
PsiI TTATAA 1 cut(s) 858
Psp124BI GAGCTC 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 3 cut(s) 214, 813, 1384
PspPI GGNCC 1 cut(s) 1383
PstI CTGCAG 1 cut(s) 57
PsuI RGATCY 1 cut(s) 107
PsyI GACNNNGTC 2 cut(s) 967, 1253
PvuII CAGCTG 2 cut(s) 145, 718
RsaI GTAC 2 cut(s) 439, 493
RsaNI GTAC 2 cut(s) 438, 492
SacI GAGCTC 1 cut(s) 398
SaqAI TTAA 4 cut(s) 363, 863, 1145, 1374
SatI GCNGC 6 cut(s) 6, 53, 570, 692, 1169, 1405
Sau3AI GATC 5 cut(s) 107, 804, 907, 994, 1269
Sau96I GGNCC 1 cut(s) 1383
SchI GAGTC 3 cut(s) 148, 467, 1033
ScrFI CCNGG 2 cut(s) 86, 101
SduI GDGCHC 3 cut(s) 154, 398, 1192
SfaNI GCATC 7 cut(s) 536, 599, 976, 1084, 1095, 1142, 1376
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 1383
SmlI CTYRAG 1 cut(s) 1191
SmoI CTYRAG 1 cut(s) 1191
SpeI ACTAGT 1 cut(s) 835
SsiI CCGC 3 cut(s) 5, 639, 780
SspI AATATT 1 cut(s) 789
SspMI CTAG 3 cut(s) 465, 836, 1353
SstI GAGCTC 1 cut(s) 398
StyD4I CCNGG 2 cut(s) 84, 99
StyI CCWWGG 1 cut(s) 937
TaaI ACNGT 6 cut(s) 67, 161, 776, 1032, 1240, 1322
TaiI ACGT 2 cut(s) 632, 1300
TaqI TCGA 1 cut(s) 593
TatI WGTACW 2 cut(s) 437, 491
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 121, 461, 953
Tru1I TTAA 4 cut(s) 363, 863, 1145, 1374
Tru9I TTAA 4 cut(s) 363, 863, 1145, 1374
TscAI CASTG 6 cut(s) 494, 781, 1012, 1096, 1414, 1422
TseFI GTSAC 5 cut(s) 61, 470, 1003, 1036, 1075
TseI GCWGC 5 cut(s) 52, 569, 691, 1168, 1404
Tsp45I GTSAC 5 cut(s) 61, 470, 1003, 1036, 1075
TspRI CASTG 6 cut(s) 494, 781, 1012, 1096, 1414, 1422
Tth111I GACNNNGTC 2 cut(s) 967, 1253
VpaK11BI GGWCC 1 cut(s) 1383
XagI CCTNNNNNAGG 2 cut(s) 207, 980
XapI RAATTY 4 cut(s) 278, 366, 595, 1174
XcmI CCANNNNNNNNNTGG 1 cut(s) 512
XspI CTAG 3 cut(s) 465, 836, 1353
Zsp2I ATGCAT 2 cut(s) 1099, 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.