Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002560

Physical Location & Seq

Genomic Coordinates Forward (+)

8238899 .. 8243434

Gene Structure 4536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG051200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCGGCAACTTTGTTCCGGGCGGTGGCGGTCGCCATAATATTATTGCTGCAGTTTCTGACGGTGGTTCTGTGCAGCTTTCCGGCGACTCTGACTCTTGAGAGAGCTTTTCCAACGAATCACAACGTGCAGCTGAGTCAGCTCAGAGCCCGAGACCGAGTCAGGCATGGCAGGATGTTGAGTGGTGTCGTCGAGTTCCCTATCGGAGGCACCTTCAATCCATACTTAGTCGGGCTATATTTTACAAGCGTCAAACTGGGAACTCCTGCAACAGAATTTTATGTGCAGATTGATACCGGAAGTGATGCTTTGTGGATTGGTTGCAATTCCTGTTCCGGTTGCCCCCAATCCTCCGGACTTAAAATTCAGCTCCATACTTTTGATCCTCAGAGCTCACCAACTGCTTCGGTGGTCTCCTGTTCTGATAAAATATGTACACTTGGACTCGAAACACAAGATTCTAGCTGTGATTCACAAAATAAGCGGTGTTCTTACACATTCCAATACGGAGATGGAAGTGGGACATCAGGCTATTATGTATCAGACTTATTACATTTTGATACAGCAGCTGGTAATCAGTCTGCGACATCAAACTCTTCAGCCTCCATTGTCTTTGGGTGTAGCACGTCAGCAAGCGGGGTGTTGCAGAAAACAGATAGAGCAGTCGATGGGATTTTCGGATTCGGGCAGCAAGAAATGTCTGTCATCTCACAGCTGTCTTCACAGGGAATAGCTCCAAAAGTATTTTCTCATTGCTTTAAAGGAGATGACACTGGCGGGGGTATAATGGTTCTTGGTGAGATCGTGGAACCTAACATTGTTTATACCCCACTTGTCCAAAATCAGCCTCATTATAACTTAAATCTGGAGAGCATTAGTGTTGGTGGTCAAGCATTACCAATTGACCAATCAGTCTTTGCAACATCAAGCAACCAAGGAACGATAGTTGATTCTGGGACAACTTTGGCATACCTTGCACAAGATGCCTATGATCCTTTTGTCAACGCAATTACAAGTGCCGTTTCACAATCTGTGACTCCTGTTTCTTCCCAGGAAGAACAATGTTACATAGTCACCTCCAGCATCAATGATACATTTCCCCAAGTTAGTTTGAACTTCGCTGGTAATGCATCCATGATACTAAGACCTGAGGACTACCTGTTGCAGCAGAATTCTGCAGTGAGTGTCTTGCTTCTTCTTTCAACTGATAAAAACTTGTTTATATGTTTTCATTTGTTCAAAAGTTGTGGTTTGCAACTCCTTTTGTTTGCACAGTTTGCTTCTATGTATTTTTATGGATCTGTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

436

Amino Acids

46.69

Weight (kDa)

4.81

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	80 - 266	9.1e-41	Xylanase inhibitor N-terminal
Asp	PF00026	80 - 393	6.1e-22	Eukaryotic aspartyl protease
TAXi_C	PF14541	284 - 395	3.6e-19	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22850
fragaria_vesca	FvH4_3g30200 FvH4_3g30200 FvH4_3g30200 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560
malus_domestica	MD02G1291400.v1.1 MD03G1130700.v1.1 MD11G1152500.v1.1
prunus_persica	Prupe.2G031400_v2.0.a1 Prupe.6G115500_v2.0.a1 Prupe.6G115500_v2.0.a1
pyrus_communis	pycom02g24630 pycom02g24640 pycom11g12500
rosa_chinensis	RchiOBHm_Chr1g0321281 RchiOBHm_Chr5g0055981
rosa_laevigata	RLG00000030431 RLG00000035040
rosa_multiflora	Rmu_co8118894.1_g000001 Rmu_sc0029150.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433920 Rroxscaffold_1G00024290 Rroxscaffold_4G00327850
rosa_rugosa	Rorug01G0031900 Rorug05G0296800 Rorug05G0296900
rosa_samantha	Rh1AG044000 Rh1BG041700 Rh1CG046600 Rh1DG051200 Rh5AG367900 Rh5BG378300 Rh5CG401700 Rh5DG391400
rosa_wichuraiana	Rw0G006980 Rw1G003880 Rw5G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AasI	GACNNNNNNGTC	1 cut(s)	911
AccB1I	GGYRCC	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	353
AciI	CCGC	6 cut(s)	5, 23, 29, 484, 636, 777
AclWI	GGATC	3 cut(s)	377, 986, 1306
AcsI	RAATTY	3 cut(s)	275, 363, 1171
AcuI	CTGAAG	1 cut(s)	582
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	2 cut(s)	25, 206
AgsI	TTSAA	4 cut(s)	217, 1114, 1203, 1240
AjiI	CACGTC	1 cut(s)	627
AjnI	CCWGG	1 cut(s)	1050
AjuI	GAANNNNNNNTTGG	2 cut(s)	730, 762
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	147, 418
AlwI	GGATC	3 cut(s)	377, 986, 1306
AlwNI	CAGNNNCTG	2 cut(s)	58, 569
Ama87I	CYCGRG	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	353
ApeKI	GCWGC	6 cut(s)	49, 75, 130, 566, 688, 1165
ApoI	RAATTY	3 cut(s)	275, 363, 1171
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	3 cut(s)	387, 809, 1066
AvaI	CYCGRG	1 cut(s)	150
AxyI	CCTNAGG	1 cut(s)	1149
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	2 cut(s)	151, 395
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	6 cut(s)	36, 87, 142, 578, 700, 1177
BccI	CCATC	2 cut(s)	506, 662
BceAI	ACGGC	1 cut(s)	1004
BciT130I	CCWGG	1 cut(s)	1052
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	2 cut(s)	147, 418
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	2 cut(s)	50, 1176
BisI	GCNGC	7 cut(s)	6, 50, 76, 131, 567, 689, 1166
BlsI	GCNGC	7 cut(s)	7, 51, 77, 132, 568, 690, 1167
Bme1390I	CCNGG	2 cut(s)	20, 1052
BmeT110I	CYCGRG	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	211, 810
BmrFI	CCNGG	2 cut(s)	20, 1052
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	4 cut(s)	295, 973, 1092, 1139
BmuI	ACTGGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	711
BpmI	CTGGAG	2 cut(s)	887, 1063
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	20
BsaI	GGTCTC	2 cut(s)	147, 418
BsaJI	CCNNGG	2 cut(s)	934, 1050
BsaWI	WCCGGW	3 cut(s)	296, 335, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 206
Bse1I	ACTGG	2 cut(s)	261, 778
Bse21I	CCTNAGG	1 cut(s)	1149
Bse3DI	GCAATG	1 cut(s)	751
BseAI	TCCGGA	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	1052
BseDI	CCNNGG	2 cut(s)	934, 1050
BseGI	GGATG	2 cut(s)	180, 1130
BseLI	CCNNNNNNNGG	2 cut(s)	25, 206
BseMI	GCAATG	1 cut(s)	751
BseMII	CTCAG	4 cut(s)	125, 157, 401, 1140
BseNI	ACTGG	2 cut(s)	261, 778
BseXI	GCAGC	6 cut(s)	36, 87, 142, 578, 700, 1177
BsgI	GTGCAG	3 cut(s)	94, 149, 305
Bsh1285I	CGRYCG	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	5 cut(s)	19, 83, 297, 336, 354
BslFI	GGGAC	2 cut(s)	535, 970
BslI	CCNNNNNNNGG	2 cut(s)	25, 206
BsmAI	GTCTC	2 cut(s)	147, 418
BsmFI	GGGAC	2 cut(s)	535, 970
Bso31I	GGTCTC	2 cut(s)	147, 418
BsoBI	CYCGRG	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	151, 395
Bsp13I	TCCGGA	1 cut(s)	353
Bsp1407I	TGTACA	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	382, 801, 991, 1298
BspACI	CCGC	6 cut(s)	5, 23, 29, 484, 636, 777
BspCNI	CTCAG	4 cut(s)	126, 156, 400, 1141
BspEI	TCCGGA	1 cut(s)	353
BspLI	GGNNCC	2 cut(s)	211, 810
BspMAI	CTGCAG	2 cut(s)	54, 1180
BspPI	GGATC	3 cut(s)	377, 986, 1306
BspT107I	GGYRCC	1 cut(s)	209
BspTNI	GGTCTC	2 cut(s)	147, 418
BsrDI	GCAATG	1 cut(s)	751
BsrGI	TGTACA	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	261, 778
BssECI	CCNNGG	2 cut(s)	934, 1050
BssMI	GATC	4 cut(s)	382, 801, 991, 1298
BssT1I	CCWWGG	1 cut(s)	934
Bst2UI	CCWGG	1 cut(s)	1052
Bst4CI	ACNGT	2 cut(s)	64, 1275
Bst6I	CTCTTC	1 cut(s)	601
BstAPI	GCANNNNNTGC	3 cut(s)	974, 983, 1277
BstAUI	TGTACA	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	6 cut(s)	134, 143, 226, 387, 1142, 1149
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	180, 1130
BstKTI	GATC	4 cut(s)	385, 804, 994, 1301
BstMAI	GTCTC	2 cut(s)	147, 418
BstMBI	GATC	4 cut(s)	382, 801, 991, 1298
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 974, 983, 1127, 1277
BstNI	CCWGG	1 cut(s)	1052
BstSCI	CCNGG	2 cut(s)	18, 1050
BstSFI	CTRYAG	2 cut(s)	50, 1176
BstV1I	GCAGC	6 cut(s)	36, 87, 142, 578, 700, 1177
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	1 cut(s)	1298
BstYI	RGATCY	1 cut(s)	1298
Bsu36I	CCTNAGG	1 cut(s)	1149
BtrI	CACGTC	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	180, 1130
BtsI	GCAGTG	1 cut(s)	1185
BtsIMutI	CAGTG	2 cut(s)	771, 1185
Cac8I	GCNNGC	1 cut(s)	634
CaiI	CAGNNNCTG	2 cut(s)	58, 569
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	435
CspCI	CAANNNNNGTGG	2 cut(s)	1228, 1263
CviAII	CATG	2 cut(s)	167, 1135
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	6 cut(s)	134, 143, 226, 387, 1142, 1149
DpnI	GATC	4 cut(s)	384, 803, 993, 1300
DpnII	GATC	4 cut(s)	382, 801, 991, 1298
DraI	TTTAAA	1 cut(s)	760
DraIII	CACNNNGTG	1 cut(s)	127
DrdI	GACNNNNNNGTC	1 cut(s)	911
DseDI	GACNNNNNNGTC	1 cut(s)	911
Eam1104I	CTCTTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	601
Ecl136II	GAGCTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	934
Eco24I	GRGCYC	2 cut(s)	151, 395
Eco31I	GGTCTC	2 cut(s)	147, 418
Eco53kI	GAGCTC	1 cut(s)	393
Eco57I	CTGAAG	1 cut(s)	582
Eco81I	CCTNAGG	1 cut(s)	1149
Eco88I	CYCGRG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	393
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	1171
EcoRII	CCWGG	1 cut(s)	1050
EcoT14I	CCWWGG	1 cut(s)	934
EcoT22I	ATGCAT	1 cut(s)	1132
EcoT38I	GRGCYC	2 cut(s)	151, 395
ErhI	CCWWGG	1 cut(s)	934
FaeI	CATG	2 cut(s)	170, 1138
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	2 cut(s)	535, 970
FatI	CATG	2 cut(s)	166, 1134
FauI	CCCGC	2 cut(s)	629, 770
Fnu4HI	GCNGC	7 cut(s)	6, 50, 76, 131, 567, 689, 1166
FokI	GGATG	2 cut(s)	187, 1117
FriOI	GRGCYC	2 cut(s)	151, 395
Fsp4HI	GCNGC	7 cut(s)	6, 50, 76, 131, 567, 689, 1166
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	7 cut(s)	6, 50, 76, 131, 567, 689, 1166
GsuI	CTGGAG	2 cut(s)	887, 1063
HapII	CCGG	5 cut(s)	19, 83, 297, 336, 354
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	170, 1138
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HpaII	CCGG	5 cut(s)	19, 83, 297, 336, 354
HphI	GGTGA	3 cut(s)	387, 809, 1066
Hpy166II	GTNNAC	2 cut(s)	437, 1003
Hpy188I	TCNGA	8 cut(s)	60, 93, 146, 206, 390, 424, 544, 680
Hpy188III	TCNNGA	4 cut(s)	98, 354, 866, 1308
Hpy8I	GTNNAC	2 cut(s)	437, 1003
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	64, 1275
HpyCH4IV	ACGT	2 cut(s)	126, 626
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 974, 983, 1127, 1277
HpyF3I	CTNAG	6 cut(s)	134, 143, 226, 387, 1142, 1149
HpySE526I	ACGT	2 cut(s)	126, 626
Hsp92II	CATG	2 cut(s)	170, 1138
Kpn2I	TCCGGA	1 cut(s)	353
Kzo9I	GATC	4 cut(s)	382, 801, 991, 1298
LmnI	GCTCC	2 cut(s)	375, 739
Lsp1109I	GCAGC	6 cut(s)	36, 87, 142, 578, 700, 1177
LweI	GCATC	4 cut(s)	295, 973, 1092, 1139
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	2 cut(s)	126, 626
MaeIII	GTNAC	3 cut(s)	1033, 1064, 1072
MalI	GATC	4 cut(s)	384, 803, 993, 1300
MboI	GATC	4 cut(s)	382, 801, 991, 1298
MboII	GAAGA	5 cut(s)	588, 711, 1038, 1067, 1187
MfeI	CAATTG	1 cut(s)	900
MflI	RGATCY	1 cut(s)	1298
MhlI	GDGCHC	2 cut(s)	151, 395
MluCI	AATT	6 cut(s)	275, 325, 363, 900, 1008, 1171
MlyI	GAGTC	6 cut(s)	82, 88, 145, 168, 438, 1030
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	200, 361, 396, 613, 858, 1087, 1144
Mph1103I	ATGCAT	1 cut(s)	1132
MroI	TCCGGA	1 cut(s)	353
MseI	TTAA	3 cut(s)	360, 759, 860
MspA1I	CMGCKG	3 cut(s)	133, 569, 715
MspI	CCGG	5 cut(s)	19, 83, 297, 336, 354
MspR9I	CCNGG	2 cut(s)	20, 1052
MunI	CAATTG	1 cut(s)	900
MvaI	CCWGG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	5 cut(s)	139, 974, 983, 1127, 1277
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	4 cut(s)	382, 801, 991, 1298
NlaIII	CATG	2 cut(s)	170, 1138
NlaIV	GGNNCC	2 cut(s)	211, 810
NmuCI	GTSAC	2 cut(s)	1033, 1072
NsiI	ATGCAT	1 cut(s)	1132
PfeI	GAWTC	5 cut(s)	118, 458, 470, 681, 950
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	7 cut(s)	7, 51, 77, 132, 568, 690, 1167
PleI	GAGTC	6 cut(s)	82, 88, 144, 167, 438, 1030
PpsI	GAGTC	6 cut(s)	82, 88, 144, 167, 438, 1030
PsiI	TTATAA	1 cut(s)	855
Psp124BI	GAGCTC	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	1050
PspGI	CCWGG	1 cut(s)	1050
PspN4I	GGNNCC	2 cut(s)	211, 810
PstI	CTGCAG	2 cut(s)	54, 1180
PstNI	CAGNNNCTG	2 cut(s)	58, 569
PsuI	RGATCY	1 cut(s)	1298
PsyI	GACNNNGTC	1 cut(s)	158
PvuII	CAGCTG	3 cut(s)	133, 569, 715
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	360, 759, 860
SatI	GCNGC	7 cut(s)	6, 50, 76, 131, 567, 689, 1166
Sau3AI	GATC	4 cut(s)	382, 801, 991, 1298
SchI	GAGTC	6 cut(s)	82, 88, 145, 168, 438, 1030
ScrFI	CCNGG	2 cut(s)	20, 1052
SduI	GDGCHC	2 cut(s)	151, 395
SfaNI	GCATC	4 cut(s)	295, 973, 1092, 1139
SfcI	CTRYAG	2 cut(s)	50, 1176
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	6 cut(s)	275, 325, 363, 900, 1008, 1171
SsiI	CCGC	6 cut(s)	5, 23, 29, 484, 636, 777
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	18, 1050
StyI	CCWWGG	1 cut(s)	934
TaaI	ACNGT	2 cut(s)	64, 1275
TaiI	ACGT	2 cut(s)	129, 629
TaqI	TCGA	3 cut(s)	192, 447, 666
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	6 cut(s)	275, 325, 363, 900, 1008, 1171
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	118, 458, 470, 681, 950
Tru1I	TTAA	3 cut(s)	360, 759, 860
Tru9I	TTAA	3 cut(s)	360, 759, 860
TscAI	CASTG	2 cut(s)	778, 1185
TseFI	GTSAC	2 cut(s)	1033, 1072
TseI	GCWGC	6 cut(s)	49, 75, 130, 566, 688, 1165
Tsp45I	GTSAC	2 cut(s)	1033, 1072
TspDTI	ATGAA	1 cut(s)	1220
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	2 cut(s)	778, 1185
Tth111I	GACNNNGTC	1 cut(s)	158
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	3 cut(s)	275, 363, 1171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XspI	CTAG	1 cut(s)	462
Zsp2I	ATGCAT	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.