Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002560

Physical Location & Seq

Genomic Coordinates Reverse (-)

22773151 .. 22775601

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGGCAGTTTTGCTGGGAAAGCTTCTGATTGCCGTCGTGCTACTGATGCCGCATGCGGTGGTTCTGTGCAGTTTTCCCGCCACTCTAACTCTGGAGAGAGCTTTTCCAACAAATCACAAAGTGGAACTGAGTCAACTCAGAGCTCGTGATCGAGTCAGGCATGGAAGGATGTTGCAGCAGTCGCCAAGTCCAAGTGGTGTCATCAGTTTCCCCGTTGGAGGAACCTTCAATCCATACCTAGTCGGGCTTTATTTTACAAGCGTGAAATTGGGTACACCTGCAACGGAGTACTATGTGCAGATTGATACCGGAAGTGATGTTTTGTGGGTTGGCTGCACTTCCTGCAATGGCTGCCCCCAATCGACTGGACTCAAAGTAAACTCATCACCTCTCTTAATCCTTCTCATCCTTACTCTCCGAATTCAAATTTGTCAAGTTTTCGGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

151

Amino Acids

16.22

Weight (kDa)

9.17

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	85 - 126	5.8e-10	Xylanase inhibitor N-terminal
Asp	PF00026	85 - 121	2.8e-06	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22850
fragaria_vesca	FvH4_3g30200 FvH4_3g30200 FvH4_3g30200 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560
malus_domestica	MD02G1291400.v1.1 MD03G1130700.v1.1 MD11G1152500.v1.1
prunus_persica	Prupe.2G031400_v2.0.a1 Prupe.6G115500_v2.0.a1 Prupe.6G115500_v2.0.a1
pyrus_communis	pycom02g24630 pycom02g24640 pycom11g12500
rosa_chinensis	RchiOBHm_Chr1g0321281 RchiOBHm_Chr5g0055981
rosa_laevigata	RLG00000030431 RLG00000035040
rosa_multiflora	Rmu_co8118894.1_g000001 Rmu_sc0029150.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433920 Rroxscaffold_1G00024290 Rroxscaffold_4G00327850
rosa_rugosa	Rorug01G0031900 Rorug05G0296800 Rorug05G0296900
rosa_samantha	Rh1AG044000 Rh1BG041700 Rh1CG046600 Rh1DG051200 Rh5AG367900 Rh5BG378300 Rh5CG401700 Rh5DG391400
rosa_wichuraiana	Rw0G006980 Rw1G003880 Rw5G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	289
Acc36I	ACCTGC	1 cut(s)	289
AciI	CCGC	4 cut(s)	5, 53, 59, 81
AcsI	RAATTY	2 cut(s)	423, 429
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	277, 293
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	232, 428
AloI	GAACNNNNNNTCC	2 cut(s)	217, 249
AluBI	AGCT	3 cut(s)	25, 104, 146
AluI	AGCT	3 cut(s)	25, 104, 146
Alw21I	GWGCWC	1 cut(s)	148
ApeKI	GCWGC	3 cut(s)	178, 336, 354
ApoI	RAATTY	2 cut(s)	423, 429
AsuHPI	GGTGA	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	148
BauI	CACGAG	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	190, 323, 341
BceAI	ACGGC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	5 cut(s)	6, 53, 179, 337, 355
BlsI	GCNGC	5 cut(s)	7, 54, 180, 338, 356
BmcAI	AGTACT	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	226
BmsI	GCATC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	177, 408
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	2 cut(s)	122, 154
BseNI	ACTGG	1 cut(s)	373
BseXI	GCAGC	3 cut(s)	190, 323, 341
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	3 cut(s)	91, 320, 322
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	4 cut(s)	5, 53, 59, 81
BspCNI	CTCAG	2 cut(s)	123, 153
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	373
BssMI	GATC	1 cut(s)	151
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
BstAPI	GCANNNNNTGC	2 cut(s)	345, 354
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	131, 140
BstF5I	GGATG	2 cut(s)	177, 408
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 49, 184, 345, 354
BstNSI	RCATGY	1 cut(s)	59
BstV1I	GCAGC	3 cut(s)	190, 323, 341
BstXI	CCANNNNNNTGG	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	177, 408
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	276, 292
CviAII	CATG	2 cut(s)	56, 164
CviJI	RGCY	6 cut(s)	25, 104, 146, 250, 336, 354
CviKI_1	RGCY	6 cut(s)	25, 104, 146, 250, 336, 354
CviQI	GTAC	2 cut(s)	276, 292
DdeI	CTNAG	2 cut(s)	131, 140
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
DraIII	CACNNNGTG	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	2 cut(s)	59, 167
FaiI	YATR	5 cut(s)	57, 165, 238, 297, 451
FatI	CATG	2 cut(s)	55, 163
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	5 cut(s)	6, 53, 179, 337, 355
FokI	GGATG	2 cut(s)	184, 395
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	5 cut(s)	6, 53, 179, 337, 355
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	5 cut(s)	6, 53, 179, 337, 355
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	116
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	2 cut(s)	59, 167
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	3 cut(s)	133, 156, 372
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	3 cut(s)	137, 278, 382
Hpy188I	TCNGA	4 cut(s)	30, 143, 422, 446
Hpy188III	TCNNGA	2 cut(s)	95, 149
Hpy8I	GTNNAC	3 cut(s)	137, 278, 382
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	162, 238, 413
HpyCH4V	TGCA	6 cut(s)	72, 178, 284, 301, 339, 348
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 49, 184, 345, 354
HpyF3I	CTNAG	2 cut(s)	131, 140
Hsp92II	CATG	2 cut(s)	59, 167
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	7 cut(s)	2, 80, 145, 294, 325, 354, 358
Lsp1109I	GCAGC	3 cut(s)	190, 323, 341
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	242
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	3 cut(s)	269, 423, 429
MlyI	GAGTC	3 cut(s)	142, 165, 366
MmeI	TCCRAC	2 cut(s)	134, 199
MnlI	CCTC	2 cut(s)	215, 402
MseI	TTAA	1 cut(s)	398
MspI	CCGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	5 cut(s)	22, 49, 184, 345, 354
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	59, 167
NlaIV	GGNNCC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	289
PkrI	GCNGC	5 cut(s)	7, 54, 180, 338, 356
PleI	GAGTC	3 cut(s)	141, 164, 366
PpsI	GAGTC	3 cut(s)	141, 164, 366
Psp124BI	GAGCTC	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	226
RsaI	GTAC	2 cut(s)	277, 293
RsaNI	GTAC	2 cut(s)	276, 292
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	5 cut(s)	6, 53, 179, 337, 355
Sau3AI	GATC	1 cut(s)	151
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	3 cut(s)	142, 165, 366
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	7 cut(s)	27, 106, 148, 230, 243, 283, 394
SfaNI	GCATC	1 cut(s)	39
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	3 cut(s)	269, 423, 429
SsiI	CCGC	4 cut(s)	5, 53, 59, 81
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	148
TaqI	TCGA	2 cut(s)	154, 365
TasI	AATT	3 cut(s)	269, 423, 429
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	2 cut(s)	8, 55
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TseI	GCWGC	3 cut(s)	178, 336, 354
TspGWI	ACGGA	1 cut(s)	302
XapI	RAATTY	2 cut(s)	423, 429
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	242
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.