Rmu_co8118894.1_g000001

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8118894.1
OG0002560
Physical Location & Seq
Reverse (-)
1 .. 542
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8118894.1_g000001.1.cds

Sequence Viewer

Length: 233 bp
atggcggcaactttgtttcgggcggtggcggtcgccataatattattgctgcagtttctgacggtggttctgtgcagctttccggcgactctgactcttgagagagcttttccgacgaatcacaacgtgcagctgagtcagctcagagcccgagaccgagtcaggcatggcaggatgttgagtggtgtcgtcgagttccctatcggaggcaccttcaatccatacttagtcgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

78

Amino Acids

8.6

Weight (kDa)

11.25

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AciI CCGC 3 cut(s) 5, 23, 29
AdeI CACNNNGTG 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 4 cut(s) 78, 107, 133, 142
AluI AGCT 4 cut(s) 78, 107, 133, 142
Alw26I GTCTC 1 cut(s) 147
AlwNI CAGNNNCTG 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 150
ApeKI GCWGC 3 cut(s) 49, 75, 130
AvaI CYCGRG 1 cut(s) 150
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 151
BbvI GCAGC 3 cut(s) 36, 87, 142
BcoDI GTCTC 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 50
BisI GCNGC 4 cut(s) 6, 50, 76, 131
BlsI GCNGC 4 cut(s) 7, 51, 77, 132
BmeT110I CYCGRG 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 2 cut(s) 125, 157
BseXI GCAGC 3 cut(s) 36, 87, 142
BsgI GTGCAG 2 cut(s) 94, 149
Bsh1285I CGRYCG 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 151
BspACI CCGC 3 cut(s) 5, 23, 29
BspCNI CTCAG 2 cut(s) 126, 156
BspLI GGNNCC 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 64
BstDEI CTNAG 3 cut(s) 134, 143, 226
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 147
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 50
BstV1I GCAGC 3 cut(s) 36, 87, 142
BtsCI GGATG 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 58
CviAII CATG 1 cut(s) 167
CviJI RGCY 5 cut(s) 78, 107, 133, 142, 149
CviKI_1 RGCY 5 cut(s) 78, 107, 133, 142, 149
DdeI CTNAG 3 cut(s) 134, 143, 226
DraIII CACNNNGTG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 1 cut(s) 170
FaiI YATR 3 cut(s) 38, 168, 223
FatI CATG 1 cut(s) 166
Fnu4HI GCNGC 4 cut(s) 6, 50, 76, 131
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 4 cut(s) 6, 50, 76, 131
GluI GCNGC 4 cut(s) 6, 50, 76, 131
HapII CCGG 1 cut(s) 83
Hin1II CATG 1 cut(s) 170
HinfI GANTC 5 cut(s) 88, 94, 118, 136, 159
HpaII CCGG 1 cut(s) 83
Hpy188I TCNGA 5 cut(s) 60, 93, 114, 146, 206
Hpy188III TCNNGA 1 cut(s) 98
Hpy99I CGWCG 2 cut(s) 118, 194
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 52, 75, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 3 cut(s) 134, 143, 226
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 170
LpnPI CCDG 3 cut(s) 96, 148, 157
Lsp1109I GCAGC 3 cut(s) 36, 87, 142
MaeII ACGT 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 151
MlyI GAGTC 4 cut(s) 82, 88, 145, 168
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 139
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 118
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 4 cut(s) 7, 51, 77, 132
PleI GAGTC 4 cut(s) 82, 88, 144, 167
PpsI GAGTC 4 cut(s) 82, 88, 144, 167
PspN4I GGNNCC 1 cut(s) 211
PstI CTGCAG 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 133
SatI GCNGC 4 cut(s) 6, 50, 76, 131
SchI GAGTC 4 cut(s) 82, 88, 145, 168
SduI GDGCHC 1 cut(s) 151
SetI ASST 6 cut(s) 80, 109, 129, 135, 144, 215
SfcI CTRYAG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SsiI CCGC 3 cut(s) 5, 23, 29
SspI AATATT 1 cut(s) 42
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 192
TaqII GACCGA 1 cut(s) 171
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 118
TseI GCWGC 3 cut(s) 49, 75, 130
Tth111I GACNNNGTC 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.