Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002560

Physical Location & Seq

Genomic Coordinates Reverse (-)

8382149 .. 8386464

Gene Structure 4316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGGCTTTCCCTTCGGAATTCTAATCGCCGGCGCAATTCTGATGTCGGCGGCTGTGGTGCTGTGTAGTTTCCCGGCTGCCCTCAGCCTCGAGAGAGCTTTTCCTAATAGCCTCCGAGTGGAGTTGAGTCAACTCAGAGCTCGGGACAGAGCCAGGCATGGAAGGATGCTTCAGTCCTCTAATGGTATCGTTAATTTACCTGTTCGGGGAACCTTCGATCCGTTCCGCGTTGGGCTCTATTATACAAAACTGCAATTGGGATCTCCTCCGAGAGATTATTATGTGCAGATTGATACCGGAAGTGATGTTCTGTGGGTCAGTTGTGGTTCCTGCAACGGTTGCCCTGAAACAAGTGGACTCCAGATTGAGCTCAATTTGTTTGATCCTCAAAGCTCATCAACATCACAATTCATTTCTTGTTCGGATCGAAGATGCAGTCTTGGCATTCAATCATCAGATTCGGGTTGTTCCACTCAGAGTAACCAGTGTTCATACACATTCCAGTATGGAGATGGCAGTGGGACATCAGGCTATTATGTATCAGACTTGTTGCACCTTGAGACGATTCTTGAGGGTTCTGTAACACAAAATGCTTCAGCTTCCATTGTCTTTGGGTGTAGCACCTTGCAGACTGGTGATTTGACAAAGTCAGATAGAGCAGTTGATGGGATCTTTGGGTTTGGCCAACAGGGTATGTCTGTCATCTCTCAATTGGCTTCACAAGGAGTAGCACCAAACGTCTTCTCCCACTGCTTGAGGGGAGATGATGGTGGTGGGGGTATATTGGTTATTGGCGAGATTGTGGAACCAAATATAGTCTATAGCCCGCTCGTCCCATCACAGCCTCATTATAATTTGAATCTGCAGAGCATTTCTGTCAATGGGCAAATATTACAAATTGATCCATCAGTGTTTGCAACATCAAGTAATCGAGGAACCATAGTTGATTCTGGTACAACTTTGGCATACCTTGCATCTGAAGCTTATGATCCTTTTATCAGTGCTGTTACTGCTTCTGTTTCACAATCCGTGCACCCTGTTGTTTCAAACGGAAACCAGTGTTATTTAATTACCTCCAGTGTCAGTGATATATTTCCTCAAGTTAGTTTAAACTTTGCTGGTGGCACAGCCATGATTCTGAGACCTCAGGACTACCTTATACAGCAGGGATCTATTAGTGGTGCTGCAAGGTGGTGCATTGGCCTTCAGAAACTTCAAGGTTCAGGAATAACGATTTTAGGAGACCTTGTGCTAAAAGACAAAATCATTGTTTATGATTTGGGTGGTCAACGAATTGGATGGGCTAACTATGACTGTTCAATGTCCGTTAACGTCTCTGCAACAAGTAGAACTGGAAAAAGTGAATATGTCAATGCAGGACAGATAAGTGACAGCAGTTCATTGCATCTCGATCCCTACGATCTGATACCGGCAAGCATAGTGGCTTTTCTTGTGCTCATCATTTCTCTGCAAGGAAACTTCCTGTTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_N

Protein Analysis

498

Amino Acids

52.84

Weight (kDa)

4.86

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22850
fragaria_vesca	FvH4_3g30200 FvH4_3g30200 FvH4_3g30200 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560
malus_domestica	MD02G1291400.v1.1 MD03G1130700.v1.1 MD11G1152500.v1.1
prunus_persica	Prupe.2G031400_v2.0.a1 Prupe.6G115500_v2.0.a1 Prupe.6G115500_v2.0.a1
pyrus_communis	pycom02g24630 pycom02g24640 pycom11g12500
rosa_chinensis	RchiOBHm_Chr1g0321281 RchiOBHm_Chr5g0055981
rosa_laevigata	RLG00000030431 RLG00000035040
rosa_multiflora	Rmu_co8118894.1_g000001 Rmu_sc0029150.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433920 Rroxscaffold_1G00024290 Rroxscaffold_4G00327850
rosa_rugosa	Rorug01G0031900 Rorug05G0296800 Rorug05G0296900
rosa_samantha	Rh1AG044000 Rh1BG041700 Rh1CG046600 Rh1DG051200 Rh5AG367900 Rh5BG378300 Rh5CG401700 Rh5DG391400
rosa_wichuraiana	Rw0G006980 Rw1G003880 Rw5G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
AccBSI	CCGCTC	1 cut(s)	829
AccII	CGCG	1 cut(s)	228
AciI	CCGC	3 cut(s)	50, 226, 827
AclWI	GGATC	9 cut(s)	212, 268, 377, 432, 677, 896, 983, 1177, 1406
AcoI	YGGCCR	1 cut(s)	682
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	4 cut(s)	155, 579, 999, 1190
AfaI	GTAC	1 cut(s)	955
AfiI	CCNNNNNNNGG	2 cut(s)	118, 206
AgsI	TTSAA	5 cut(s)	449, 859, 1047, 1217, 1320
AjnI	CCWGG	1 cut(s)	152
AloI	GAACNNNNNNTCC	4 cut(s)	202, 234, 291, 323
AluBI	AGCT	6 cut(s)	98, 140, 370, 393, 599, 983
AluI	AGCT	6 cut(s)	98, 140, 370, 393, 599, 983
Alw21I	GWGCWC	4 cut(s)	142, 372, 1035, 1458
Alw26I	GTCTC	4 cut(s)	554, 1135, 1236, 1339
Alw44I	GTGCAC	1 cut(s)	1031
AlwI	GGATC	9 cut(s)	212, 268, 377, 432, 677, 896, 983, 1177, 1406
Ama87I	CYCGRG	2 cut(s)	89, 141
AoxI	GGCC	2 cut(s)	682, 1201
ApaLI	GTGCAC	1 cut(s)	1031
ApeKI	GCWGC	2 cut(s)	77, 1184
ApoI	RAATTY	1 cut(s)	18
ArsI	GACNNNNNNTTYG	4 cut(s)	421, 453, 622, 654
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	647
AvaI	CYCGRG	2 cut(s)	89, 141
AxyI	CCTNAGG	1 cut(s)	1146
BaeGI	GKGCMC	1 cut(s)	1035
BalI	TGGCCA	1 cut(s)	684
BanII	GRGCYC	3 cut(s)	142, 237, 372
BbsI	GAAGAC	1 cut(s)	733
Bbv12I	GWGCWC	4 cut(s)	142, 372, 1035, 1458
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	64, 1171
BccI	CCATC	6 cut(s)	506, 659, 761, 844, 913, 1293
BciT130I	CCWGG	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	4 cut(s)	554, 1135, 1236, 1339
BfmI	CTRYAG	2 cut(s)	820, 863
BisI	GCNGC	3 cut(s)	51, 78, 1185
BlsI	GCNGC	3 cut(s)	52, 79, 1186
Bme1390I	CCNGG	2 cut(s)	74, 154
BmeT110I	CYCGRG	2 cut(s)	89, 141
BmiI	GGNNCC	4 cut(s)	211, 328, 807, 937
BmrFI	CCNGG	2 cut(s)	74, 154
BmsI	GCATC	4 cut(s)	156, 422, 983, 1414
BpiI	GAAGAC	1 cut(s)	733
BpmI	CTGGAG	2 cut(s)	344, 1060
Bpu10I	CCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	4 cut(s)	578, 590, 775, 1083
BpuMI	CCSGG	1 cut(s)	74
BsaI	GGTCTC	2 cut(s)	1135, 1236
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	4 cut(s)	728, 758, 1233, 1263
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 206
Bse118I	RCCGGY	2 cut(s)	29, 1429
Bse1I	ACTGG	6 cut(s)	484, 502, 637, 1057, 1077, 1357
Bse21I	CCTNAGG	1 cut(s)	1146
Bse3DI	GCAATG	1 cut(s)	1400
BseBI	CCWGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	171, 1304
BseLI	CCNNNNNNNGG	2 cut(s)	118, 206
BseMI	GCAATG	1 cut(s)	1400
BseMII	CTCAG	5 cut(s)	97, 148, 488, 1130, 1160
BseNI	ACTGG	6 cut(s)	484, 502, 637, 1057, 1077, 1357
BseRI	GAGGAG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	1035
BseXI	GCAGC	2 cut(s)	64, 1171
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	684, 1203
BsiHKAI	GWGCWC	4 cut(s)	142, 372, 1035, 1458
BsiHKCI	CYCGRG	2 cut(s)	89, 141
BsiSI	CCGG	4 cut(s)	30, 74, 297, 1430
BslFI	GGGAC	3 cut(s)	158, 535, 818
BslI	CCNNNNNNNGG	2 cut(s)	118, 206
BsmAI	GTCTC	4 cut(s)	554, 1135, 1236, 1339
BsmBI	CGTCTC	2 cut(s)	554, 1339
BsmFI	GGGAC	3 cut(s)	158, 535, 818
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	684, 1203
Bso31I	GGTCTC	2 cut(s)	1135, 1236
BsoBI	CYCGRG	2 cut(s)	89, 141
Bsp1286I	GDGCHC	5 cut(s)	142, 237, 372, 1035, 1458
BspACI	CCGC	3 cut(s)	50, 226, 827
BspANI	GGCC	2 cut(s)	684, 1203
BspCNI	CTCAG	5 cut(s)	96, 147, 487, 1131, 1159
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	4 cut(s)	211, 328, 807, 937
BspMAI	CTGCAG	1 cut(s)	867
BspPI	GGATC	9 cut(s)	212, 268, 377, 432, 677, 896, 983, 1177, 1406
BspTNI	GGTCTC	2 cut(s)	1135, 1236
BsrBI	CCGCTC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	1400
BsrFI	RCCGGY	2 cut(s)	29, 1429
BsrI	ACTGG	6 cut(s)	484, 502, 637, 1057, 1077, 1357
BssAI	RCCGGY	2 cut(s)	29, 1429
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	338, 1316
BstAPI	GCANNNNNTGC	2 cut(s)	339, 971
BstC8I	GCNNGC	3 cut(s)	31, 827, 1435
BstDEI	CTNAG	5 cut(s)	83, 134, 474, 1139, 1146
BstF5I	GGATG	2 cut(s)	171, 1304
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	4 cut(s)	554, 1135, 1236, 1339
BstMWI	GCNNNNNNNGC	5 cut(s)	339, 441, 971, 980, 1010
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	72, 152
BstSFI	CTRYAG	2 cut(s)	820, 863
BstSLI	GKGCMC	1 cut(s)	1035
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	64, 1171
BstV2I	GAAGAC	1 cut(s)	733
BstX2I	RGATCY	3 cut(s)	260, 669, 1169
BstYI	RGATCY	3 cut(s)	260, 669, 1169
Bsu36I	CCTNAGG	1 cut(s)	1146
BsuRI	GGCC	2 cut(s)	684, 1203
BtsCI	GGATG	2 cut(s)	171, 1304
BtsI	GCAGTG	2 cut(s)	523, 748
BtsIMutI	CAGTG	8 cut(s)	491, 523, 748, 915, 1006, 1064, 1084, 1090
Cac8I	GCNNGC	3 cut(s)	31, 827, 1435
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	2 cut(s)	29, 1429
Csp6I	GTAC	1 cut(s)	954
CspCI	CAANNNNNGTGG	2 cut(s)	1422, 1457
CviAII	CATG	2 cut(s)	158, 1132
CviQI	GTAC	1 cut(s)	954
DdeI	CTNAG	5 cut(s)	83, 134, 474, 1139, 1146
DraI	TTTAAA	1 cut(s)	1110
EaeI	YGGCCR	1 cut(s)	682
Ecl136II	GAGCTC	2 cut(s)	140, 370
Eco24I	GRGCYC	3 cut(s)	142, 237, 372
Eco31I	GGTCTC	2 cut(s)	1135, 1236
Eco53kI	GAGCTC	2 cut(s)	140, 370
Eco57I	CTGAAG	4 cut(s)	155, 579, 999, 1190
Eco81I	CCTNAGG	1 cut(s)	1146
Eco88I	CYCGRG	2 cut(s)	89, 141
EcoICRI	GAGCTC	2 cut(s)	140, 370
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	152
EcoT38I	GRGCYC	3 cut(s)	142, 237, 372
Esp3I	CGTCTC	2 cut(s)	554, 1339
FaeI	CATG	2 cut(s)	161, 1135
FaqI	GGGAC	3 cut(s)	158, 535, 818
FatI	CATG	2 cut(s)	157, 1131
FauI	CCCGC	1 cut(s)	834
Fnu4HI	GCNGC	3 cut(s)	51, 78, 1185
FokI	GGATG	2 cut(s)	178, 1311
FriOI	GRGCYC	3 cut(s)	142, 237, 372
Fsp4HI	GCNGC	3 cut(s)	51, 78, 1185
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	3 cut(s)	51, 78, 1185
GsuI	CTGGAG	2 cut(s)	344, 1060
HaeIII	GGCC	2 cut(s)	684, 1203
HapII	CCGG	4 cut(s)	30, 74, 297, 1430
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	161, 1135
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	3 cut(s)	131, 1289, 1330
HindII	GTYRAC	3 cut(s)	131, 1289, 1330
HindIII	AAGCTT	1 cut(s)	981
HinfI	GANTC	7 cut(s)	127, 357, 458, 565, 859, 947, 1135
HpaI	GTTAAC	1 cut(s)	1330
HpaII	CCGG	4 cut(s)	30, 74, 297, 1430
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	5 cut(s)	131, 356, 1033, 1289, 1330
Hpy188III	TCNNGA	7 cut(s)	91, 143, 361, 569, 1148, 1224, 1409
Hpy8I	GTNNAC	5 cut(s)	131, 356, 1033, 1289, 1330
HpyAV	CCTTC	4 cut(s)	22, 156, 223, 1214
HpyCH4III	ACNGT	2 cut(s)	338, 1316
HpyCH4IV	ACGT	2 cut(s)	738, 1332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	339, 441, 971, 980, 1010
HpyF3I	CTNAG	5 cut(s)	83, 134, 474, 1139, 1146
HpySE526I	ACGT	2 cut(s)	738, 1332
Hsp92II	CATG	2 cut(s)	161, 1135
HspAI	GCGC	1 cut(s)	33
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
KspAI	GTTAAC	1 cut(s)	1330
Lsp1109I	GCAGC	2 cut(s)	64, 1171
LweI	GCATC	4 cut(s)	156, 422, 983, 1414
MaeII	ACGT	2 cut(s)	738, 1332
MaeIII	GTNAC	4 cut(s)	479, 580, 1006, 1388
MbiI	CCGCTC	1 cut(s)	829
MboII	GAAGA	2 cut(s)	441, 733
MfeI	CAATTG	2 cut(s)	254, 710
MflI	RGATCY	3 cut(s)	260, 669, 1169
MhlI	GDGCHC	5 cut(s)	142, 237, 372, 1035, 1458
MlsI	TGGCCA	1 cut(s)	684
MluNI	TGGCCA	1 cut(s)	684
MlyI	GAGTC	2 cut(s)	136, 351
Mox20I	TGGCCA	1 cut(s)	684
MreI	CGCCGGCG	1 cut(s)	29
MroNI	GCCGGC	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	4 cut(s)	192, 1067, 1109, 1329
MslI	CAYNNNNRTG	1 cut(s)	1130
Msp20I	TGGCCA	1 cut(s)	684
MspI	CCGG	4 cut(s)	30, 74, 297, 1430
MspR9I	CCNGG	2 cut(s)	74, 154
MssI	GTTTAAAC	1 cut(s)	1110
MunI	CAATTG	2 cut(s)	254, 710
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	5 cut(s)	339, 441, 971, 980, 1010
NaeI	GCCGGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	74
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	2 cut(s)	161, 1135
NlaIV	GGNNCC	4 cut(s)	211, 328, 807, 937
NmuCI	GTSAC	1 cut(s)	1388
PaeR7I	CTCGAG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	1416
PctI	GAATGC	1 cut(s)	444
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	5 cut(s)	458, 565, 859, 947, 1135
PflFI	GACNNNGTC	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	52, 79, 1186
PleI	GAGTC	2 cut(s)	135, 351
PmeI	GTTTAAAC	1 cut(s)	1110
PpsI	GAGTC	2 cut(s)	135, 351
PsiI	TTATAA	1 cut(s)	852
Psp124BI	GAGCTC	2 cut(s)	142, 372
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	4 cut(s)	211, 328, 807, 937
PsrI	GAACNNNNNNTAC	2 cut(s)	472, 504
PstI	CTGCAG	1 cut(s)	867
PsuI	RGATCY	3 cut(s)	260, 669, 1169
PsyI	GACNNNGTC	1 cut(s)	646
RsaI	GTAC	1 cut(s)	955
RsaNI	GTAC	1 cut(s)	954
RseI	CAYNNNNRTG	1 cut(s)	1130
SacI	GAGCTC	2 cut(s)	142, 372
SaqAI	TTAA	4 cut(s)	192, 1067, 1109, 1329
SatI	GCNGC	3 cut(s)	51, 78, 1185
SchI	GAGTC	2 cut(s)	136, 351
ScrFI	CCNGG	2 cut(s)	74, 154
SduI	GDGCHC	5 cut(s)	142, 237, 372, 1035, 1458
SfaNI	GCATC	4 cut(s)	156, 422, 983, 1414
SfcI	CTRYAG	2 cut(s)	820, 863
Sfr274I	CTCGAG	1 cut(s)	89
SgrAI	CRCCGGYG	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	1130
SmlI	CTYRAG	5 cut(s)	89, 557, 569, 754, 1098
SmoI	CTYRAG	5 cut(s)	89, 557, 569, 754, 1098
SsiI	CCGC	3 cut(s)	50, 226, 827
SspI	AATATT	1 cut(s)	891
SstI	GAGCTC	2 cut(s)	142, 372
StyD4I	CCNGG	2 cut(s)	72, 152
TaaI	ACNGT	2 cut(s)	338, 1316
TaiI	ACGT	2 cut(s)	741, 1335
TaqI	TCGA	5 cut(s)	90, 216, 427, 931, 1410
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	5 cut(s)	458, 565, 859, 947, 1135
Tru1I	TTAA	4 cut(s)	192, 1067, 1109, 1329
Tru9I	TTAA	4 cut(s)	192, 1067, 1109, 1329
TscAI	CASTG	8 cut(s)	491, 523, 755, 915, 1006, 1064, 1084, 1090
TseFI	GTSAC	1 cut(s)	1388
TseI	GCWGC	2 cut(s)	77, 1184
Tsp45I	GTSAC	1 cut(s)	1388
TspDTI	ATGAA	3 cut(s)	400, 480, 1389
TspGWI	ACGGA	4 cut(s)	210, 1018, 1065, 1315
TspRI	CASTG	8 cut(s)	491, 523, 755, 915, 1006, 1064, 1084, 1090
Tth111I	GACNNNGTC	1 cut(s)	646
VneI	GTGCAC	1 cut(s)	1031
XapI	RAATTY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XhoI	CTCGAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.