Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002560

Physical Location & Seq

Genomic Coordinates Forward (+)

62132556 .. 62136902

Gene Structure 4347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG367900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGACTTTCCGGCCGGAATTGTGATCGCCGGAGCAATTCTGATGTCGGCGGCGGCGGTGCTGTGTAGCTTTCCGTCGACGCTGGTGCTGGAGAGGGCTTTTCCGGCCGACCACCGAGTGCCGCTGAGTCAACTCAGAGCTCGTGACAGAGTCCGGCATGGCCGAATGCTGCAGTCCTCAAACGGCGTCGCTGATTTCCCTGTCGAGGGAACCTTCGATCCGTTCCGGGTCGGGCTTTATTATACTAAACTGCAACTGGGATCTCCTCCAAAAGACTATTATGTGCAAATTGATACTGGAAGTGATGTTCTGTGGGTCAGTTGCGGTTCTTGCAATGGTTGTCCCGAAACGAGTGGACTCCCGATTCAGCTCAATTCCTTTGATCCTGGAAGCTCATCAACGTCACAGTTCATTTCTTGTACGGATCGAAGATGCAGTCTCGGGGTTCAGTCCTCAGATTCTGCTTGTTCCACTCAGAATAACCAGTGTTCATACACATTTCAGTATGGAGATGGCAGTGGGACATCAGGCTATTATGTTTCGGACTTGTTGCACCTTCAGACCATTCTCGAGGGTTCTATGACCCAAAATTCTTCAGCTTCCATTGTCTTTGGGTGTAGCACCTTGCAGACTGGAGACTTGACAAAGTCGGATAGAGCAGTTGATGGGATCTTTGGGTTTGGCCAGCAGGGTATGTCTGTCATCTCTCAATTGGCTTCACAAGGAGTTGCACCAAATGTCTTCTCCCACTGCTTGAGGGGAGATGCTAATGGTGGAGGTATATTAGTTATCGGCGAGATTGTGGAGCCAAATATAGTCTACAGCCCACTTGTTCCATCACAGCCTCATTATAACTTGAATCTTCAGAGCATTTCTGTCAACGGACAAGCACTGCCCATTGATCCAACAGTGTTTGCAACATCAAGCAACCGAGGAACAATAGTTGATTCTGGTACAACTTTGGCATACCTTGCAGCAGAAGCTTATGATCCTTTTATAAATGCCATTACTACTACTGTTTCACAATCAGTGCGCCCTGTTGTTTCCAATGGAAACCAGTGTTATTTAATCACCTCCAGGTTCACTTTTTGGATTCATCATCTCCATAATTTTTTTCCTTCACTGGCTCTCTTTTGTTATGAATGTACTCTGACCTGTATGTTATCTGTTCAGTATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_N

Protein Analysis

393

Amino Acids

42.18

Weight (kDa)

5.06

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	80 - 265	2.4e-42	Xylanase inhibitor N-terminal
Asp	PF00026	80 - 379	6.7e-21	Eukaryotic aspartyl protease
TAXi_C	PF14541	283 - 359	1.4e-12	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22850
fragaria_vesca	FvH4_3g30200 FvH4_3g30200 FvH4_3g30200 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560
malus_domestica	MD02G1291400.v1.1 MD03G1130700.v1.1 MD11G1152500.v1.1
prunus_persica	Prupe.2G031400_v2.0.a1 Prupe.6G115500_v2.0.a1 Prupe.6G115500_v2.0.a1
pyrus_communis	pycom02g24630 pycom02g24640 pycom11g12500
rosa_chinensis	RchiOBHm_Chr1g0321281 RchiOBHm_Chr5g0055981
rosa_laevigata	RLG00000030431 RLG00000035040
rosa_multiflora	Rmu_co8118894.1_g000001 Rmu_sc0029150.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433920 Rroxscaffold_1G00024290 Rroxscaffold_4G00327850
rosa_rugosa	Rorug01G0031900 Rorug05G0296800 Rorug05G0296900
rosa_samantha	Rh1AG044000 Rh1BG041700 Rh1CG046600 Rh1DG051200 Rh5AG367900 Rh5BG378300 Rh5CG401700 Rh5DG391400
rosa_wichuraiana	Rw0G006980 Rw1G003880 Rw5G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	852, 998
AccI	GTMKAC	2 cut(s)	77, 819
AciI	CCGC	5 cut(s)	50, 53, 56, 122, 324
AclWI	GGATC	7 cut(s)	212, 268, 377, 432, 677, 896, 983
AcoI	YGGCCR	4 cut(s)	12, 105, 160, 682
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	3 cut(s)	542, 579, 848
AcyI	GRCGYC	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	3 cut(s)	421, 955, 1147
AfiI	CCNNNNNNNGG	2 cut(s)	205, 206
AgsI	TTSAA	1 cut(s)	859
AjnI	CCWGG	2 cut(s)	385, 1076
AloI	GAACNNNNNNTCC	4 cut(s)	202, 234, 291, 323
AluBI	AGCT	6 cut(s)	69, 140, 370, 393, 599, 983
AluI	AGCT	6 cut(s)	69, 140, 370, 393, 599, 983
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	2 cut(s)	443, 630
AlwI	GGATC	7 cut(s)	212, 268, 377, 432, 677, 896, 983
AlwNI	CAGNNNCTG	1 cut(s)	461
Ama87I	CYCGRG	2 cut(s)	440, 569
AoxI	GGCC	4 cut(s)	12, 105, 160, 682
ApeKI	GCWGC	2 cut(s)	169, 974
ApoI	RAATTY	1 cut(s)	589
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
AspLEI	GCGC	1 cut(s)	1035
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	1063
AvaI	CYCGRG	2 cut(s)	440, 569
BalI	TGGCCA	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	733
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	156, 986
BccI	CCATC	3 cut(s)	506, 659, 844
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	2 cut(s)	387, 1078
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	443, 630
BfmI	CTRYAG	2 cut(s)	170, 820
BisI	GCNGC	5 cut(s)	51, 54, 122, 170, 975
BlsI	GCNGC	5 cut(s)	52, 55, 123, 171, 976
Bme1390I	CCNGG	3 cut(s)	227, 387, 1078
BmeT110I	CYCGRG	2 cut(s)	440, 569
BmiI	GGNNCC	2 cut(s)	211, 807
BmrFI	CCNGG	3 cut(s)	227, 387, 1078
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	422, 754
BmuI	ACTGGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	733
BpmI	CTGGAG	3 cut(s)	110, 654, 1060
BpuEI	CTTGAG	1 cut(s)	775
BpuMI	CCSGG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 206
Bse1I	ACTGG	6 cut(s)	261, 301, 484, 637, 1057, 1128
Bse3DI	GCAATG	1 cut(s)	340
BseBI	CCWGG	2 cut(s)	387, 1078
BseDI	CCNNGG	1 cut(s)	931
BseLI	CCNNNNNNNGG	2 cut(s)	205, 206
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	4 cut(s)	116, 148, 468, 488
BseNI	ACTGG	6 cut(s)	261, 301, 484, 637, 1057, 1128
BseRI	GAGGAG	1 cut(s)	255
BseX3I	CGGCCG	2 cut(s)	12, 105
BseXI	GCAGC	2 cut(s)	156, 986
Bsh1285I	CGRYCG	2 cut(s)	15, 108
BshFI	GGCC	4 cut(s)	14, 107, 162, 684
BsiEI	CGRYCG	2 cut(s)	15, 108
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	2 cut(s)	440, 569
BsiSI	CCGG	6 cut(s)	11, 15, 30, 104, 154, 226
BslFI	GGGAC	2 cut(s)	327, 535
BslI	CCNNNNNNNGG	2 cut(s)	205, 206
BsmAI	GTCTC	2 cut(s)	443, 630
BsmFI	GGGAC	2 cut(s)	327, 535
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	4 cut(s)	14, 107, 162, 684
BsoBI	CYCGRG	2 cut(s)	440, 569
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	8 cut(s)	24, 217, 260, 382, 424, 669, 901, 988
BspACI	CCGC	5 cut(s)	50, 53, 56, 122, 324
BspANI	GGCC	4 cut(s)	14, 107, 162, 684
BspCNI	CTCAG	4 cut(s)	117, 147, 467, 487
BspLI	GGNNCC	2 cut(s)	211, 807
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	7 cut(s)	212, 268, 377, 432, 677, 896, 983
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	6 cut(s)	261, 301, 484, 637, 1057, 1128
BssECI	CCNNGG	1 cut(s)	931
BssMI	GATC	8 cut(s)	24, 217, 260, 382, 424, 669, 901, 988
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	387, 1078
Bst4CI	ACNGT	3 cut(s)	408, 910, 1018
BstACI	GRCGYC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	4 cut(s)	125, 134, 454, 474
BstHHI	GCGC	1 cut(s)	1035
BstKTI	GATC	8 cut(s)	27, 220, 263, 385, 427, 672, 904, 991
BstMAI	GTCTC	2 cut(s)	443, 630
BstMBI	GATC	8 cut(s)	24, 217, 260, 382, 424, 669, 901, 988
BstMCI	CGRYCG	2 cut(s)	15, 108
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 330, 971, 980
BstNI	CCWGG	2 cut(s)	387, 1078
BstSCI	CCNGG	3 cut(s)	225, 385, 1076
BstSFI	CTRYAG	2 cut(s)	170, 820
BstV1I	GCAGC	2 cut(s)	156, 986
BstV2I	GAAGAC	1 cut(s)	733
BstX2I	RGATCY	2 cut(s)	260, 669
BstYI	RGATCY	2 cut(s)	260, 669
BstZI	CGGCCG	2 cut(s)	12, 105
BsuRI	GGCC	4 cut(s)	14, 107, 162, 684
BtsI	GCAGTG	3 cut(s)	523, 748, 890
BtsIMutI	CAGTG	8 cut(s)	491, 523, 748, 890, 915, 1035, 1064, 1121
Cac8I	GCNNGC	1 cut(s)	686
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	1035
CseI	GACGC	2 cut(s)	88, 175
Csp6I	GTAC	3 cut(s)	420, 954, 1146
CviAII	CATG	1 cut(s)	158
CviQI	GTAC	3 cut(s)	420, 954, 1146
DdeI	CTNAG	4 cut(s)	125, 134, 454, 474
DpnI	GATC	8 cut(s)	26, 219, 262, 384, 426, 671, 903, 990
DpnII	GATC	8 cut(s)	24, 217, 260, 382, 424, 669, 901, 988
DraIII	CACNNNGTG	1 cut(s)	118
EaeI	YGGCCR	4 cut(s)	12, 105, 160, 682
EagI	CGGCCG	2 cut(s)	12, 105
Ecl136II	GAGCTC	1 cut(s)	140
EclXI	CGGCCG	2 cut(s)	12, 105
Eco24I	GRGCYC	1 cut(s)	142
Eco52I	CGGCCG	2 cut(s)	12, 105
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	3 cut(s)	542, 579, 848
Eco88I	CYCGRG	2 cut(s)	440, 569
EcoICRI	GAGCTC	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	385, 1076
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	1 cut(s)	161
FaqI	GGGAC	2 cut(s)	327, 535
FatI	CATG	1 cut(s)	157
FblI	GTMKAC	2 cut(s)	77, 819
Fnu4HI	GCNGC	5 cut(s)	51, 54, 122, 170, 975
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	5 cut(s)	51, 54, 122, 170, 975
GlaI	GCGC	1 cut(s)	1034
GluI	GCNGC	5 cut(s)	51, 54, 122, 170, 975
GsuI	CTGGAG	3 cut(s)	110, 654, 1060
HaeIII	GGCC	4 cut(s)	14, 107, 162, 684
HapII	CCGG	6 cut(s)	11, 15, 30, 104, 154, 226
HgaI	GACGC	2 cut(s)	88, 175
HhaI	GCGC	1 cut(s)	1035
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	1033
HinP1I	GCGC	1 cut(s)	1033
HincII	GTYRAC	3 cut(s)	78, 131, 880
HindII	GTYRAC	3 cut(s)	78, 131, 880
HindIII	AAGCTT	1 cut(s)	981
HinfI	GANTC	8 cut(s)	127, 150, 357, 364, 458, 859, 947, 1093
HpaII	CCGG	6 cut(s)	11, 15, 30, 104, 154, 226
HphI	GGTGA	1 cut(s)	1063
Hpy166II	GTNNAC	6 cut(s)	78, 131, 356, 820, 880, 1083
Hpy188I	TCNGA	9 cut(s)	42, 137, 457, 477, 544, 561, 652, 867, 1152
Hpy188III	TCNNGA	4 cut(s)	143, 344, 361, 569
Hpy8I	GTNNAC	6 cut(s)	78, 131, 356, 820, 880, 1083
Hpy99I	CGWCG	3 cut(s)	79, 82, 191
HpyAV	CCTTC	3 cut(s)	223, 566, 1128
HpyCH4III	ACNGT	3 cut(s)	408, 910, 1018
HpyCH4IV	ACGT	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 330, 971, 980
HpyF3I	CTNAG	4 cut(s)	125, 134, 454, 474
HpySE526I	ACGT	1 cut(s)	401
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	161
HspAI	GCGC	1 cut(s)	1033
Kzo9I	GATC	8 cut(s)	24, 217, 260, 382, 424, 669, 901, 988
LmnI	GCTCC	2 cut(s)	32, 805
Lsp1109I	GCAGC	2 cut(s)	156, 986
LweI	GCATC	2 cut(s)	422, 754
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	2 cut(s)	143, 402
MalI	GATC	8 cut(s)	26, 219, 262, 384, 426, 671, 903, 990
MboI	GATC	8 cut(s)	24, 217, 260, 382, 424, 669, 901, 988
MboII	GAAGA	4 cut(s)	441, 585, 733, 854
MfeI	CAATTG	1 cut(s)	710
MflI	RGATCY	2 cut(s)	260, 669
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	684
MluCI	AATT	7 cut(s)	18, 36, 288, 373, 589, 710, 1108
MluNI	TGGCCA	1 cut(s)	684
MlyI	GAGTC	3 cut(s)	136, 159, 351
MmeI	TCCRAC	2 cut(s)	630, 929
Mox20I	TGGCCA	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	1 cut(s)	1067
Msp20I	TGGCCA	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	6 cut(s)	11, 15, 30, 104, 154, 226
MspR9I	CCNGG	3 cut(s)	227, 387, 1078
MunI	CAATTG	1 cut(s)	710
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	2 cut(s)	387, 1078
MwoI	GCNNNNNNNGC	4 cut(s)	104, 330, 971, 980
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	8 cut(s)	24, 217, 260, 382, 424, 669, 901, 988
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	2 cut(s)	211, 807
NmuCI	GTSAC	2 cut(s)	143, 402
PaeR7I	CTCGAG	1 cut(s)	569
PctI	GAATGC	1 cut(s)	171
PfeI	GAWTC	5 cut(s)	364, 458, 859, 947, 1093
PflFI	GACNNNGTC	2 cut(s)	149, 646
PfoI	TCCNGGA	1 cut(s)	385
PkrI	GCNGC	5 cut(s)	52, 55, 123, 171, 976
PleI	GAGTC	3 cut(s)	135, 158, 351
PpsI	GAGTC	3 cut(s)	135, 158, 351
PsiI	TTATAA	2 cut(s)	852, 998
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	385, 1076
PspGI	CCWGG	2 cut(s)	385, 1076
PspN4I	GGNNCC	2 cut(s)	211, 807
PstI	CTGCAG	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	260, 669
PsyI	GACNNNGTC	2 cut(s)	149, 646
RsaI	GTAC	3 cut(s)	421, 955, 1147
RsaNI	GTAC	3 cut(s)	420, 954, 1146
SacI	GAGCTC	1 cut(s)	142
SalI	GTCGAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	1067
SatI	GCNGC	5 cut(s)	51, 54, 122, 170, 975
Sau3AI	GATC	8 cut(s)	24, 217, 260, 382, 424, 669, 901, 988
SchI	GAGTC	3 cut(s)	136, 159, 351
ScrFI	CCNGG	3 cut(s)	227, 387, 1078
SduI	GDGCHC	1 cut(s)	142
SfaNI	GCATC	2 cut(s)	422, 754
SfcI	CTRYAG	2 cut(s)	170, 820
Sfr274I	CTCGAG	1 cut(s)	569
SgrDI	CGTCGACG	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	569, 754
SmoI	CTYRAG	2 cut(s)	569, 754
Sse9I	AATT	7 cut(s)	18, 36, 288, 373, 589, 710, 1108
SsiI	CCGC	5 cut(s)	50, 53, 56, 122, 324
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	3 cut(s)	225, 385, 1076
TaaI	ACNGT	3 cut(s)	408, 910, 1018
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	5 cut(s)	77, 204, 216, 427, 570
TasI	AATT	7 cut(s)	18, 36, 288, 373, 589, 710, 1108
TatI	WGTACW	1 cut(s)	1145
TauI	GCSGC	3 cut(s)	53, 56, 124
TfiI	GAWTC	5 cut(s)	364, 458, 859, 947, 1093
Tru1I	TTAA	1 cut(s)	1067
Tru9I	TTAA	1 cut(s)	1067
TscAI	CASTG	8 cut(s)	491, 523, 755, 897, 915, 1035, 1064, 1128
TseFI	GTSAC	2 cut(s)	143, 402
TseI	GCWGC	2 cut(s)	169, 974
Tsp45I	GTSAC	2 cut(s)	143, 402
TspDTI	ATGAA	4 cut(s)	400, 480, 1085, 1155
TspGWI	ACGGA	4 cut(s)	63, 210, 437, 897
TspRI	CASTG	8 cut(s)	491, 523, 755, 897, 915, 1035, 1064, 1128
Tth111I	GACNNNGTC	2 cut(s)	149, 646
XapI	RAATTY	1 cut(s)	589
XhoI	CTCGAG	1 cut(s)	569
XmiI	GTMKAC	2 cut(s)	77, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.