RLG00000030431

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
61356210 .. 61361121
4912 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030431

Sequence Viewer

Length: 1491 bp
ATGGCTGCAACTTTGTTTCGGGCGGCGGCGGTTGCAGTAATATTATTGCTGCAGTTTCTGACGGTGGTTCTGTGCAGCTTTCCGGCGACTCTGACTCTTGAGAGAGCTTTTCCGACGAATCACAACGTGCAGCTGAGTCAGCTCAGAGCCCGAGACCGAGTCAGGCATGGCAGGATGTTGAGTGGTGTTGTCGACTTCCCTATCGGAGGCACCTTCAATCCATACCTAGTCGGGCTATATTTTACAAGCATCAAACTGGGAACTCCTGCAACAGAATATTATGTGCAGATTGATACTGGAAGTGATGTTTTGTGGATTGGTTGCACTTCCTGTTCCGGTTGCCCCCAATCCTCCGGACTTAAAATTCAGCTCCATACTTTTGATCCTCAGAGCTCACCAACTGCTTCGGTGGTCTCTTGTTCTGATAAAATATGTACACTTGGACTCAGTACACAAGATTCTAGCTGTGATTCACAAAATAAGCGGTGTTCTTACACATTCCAATACGGAGATGGAAGTGGGACATCAGGCTATTATGTATCAGACTTATTACATTTTGATACAGCAGCTGGTAATCAGTCTGTGACATCAAACTCTTCAGCCTCCATTGTCTTTGGGTGTAGCACGTCAGCAAGCGGGGTATTGCAGAAAACAGAGAGAGCAGTCGATGGGATTTTCGGATTCGGGCAGCAAGAAATGTCTGTCATCTCACAGCTGTCTTCACAGGGAATAGCTCCAAAAGTATTTTCTCATTGTTTTAAAGGAGATGACACTGGCGGGGGTATATTGGTTCTTGGTGAGATCGTGGAACCTAACATTGTTTATACCCCACTTGTCCAAAATCAGCCTCATTATAACTTAAATCTGGAGAGCATTAGTGTTAGTGGTCAAACATTAGCAATTGACCAATCAGTCTTTGCAACATCAAGCAACCAAGGAACGATAGTTGATTCCGGGACAACTTTGACATACCTTGCACAAGATGCCTATGATCCTTTTGTCAATGCAATTACAAGTGCCGTTTCACAATCTGTGACTCCTGTTTCTTCCCAGGGAGAACAATGTTACATAGTCACCTCCAGCATCACTGATACATTTCCCCAAGTTAGTTTGAACTTCGCCGGTAATGCATCCATGATATTAAGACCTCAGGACTACCTGTTGCAGCAGAATTCTGCAGGTGATGCTCAAGGATGGTGCATTGGCATTCAGAAAAGTGATGGTCAAGACGTAACTGTATTGGGAGACCTCGTCCTAAAAGACAAGATCATTGTCTATGACTTGGCTAATCAACGTATTGGATGGGTTCAATACGACTGTTCAATGTCAGTCAGCGTCTCTTCAAATACTAGCACCGGAACTTCATCTGTTAATGGAGGGTCCATAGACGCCAACGATAACAGCAGTAGTTCATTGAGGAAGGACCCTTTCAAATTGATACCGATAAGCATGATGTTCGCTTTCCTTGTTCACATATATATCAATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

497

Amino Acids

52.91

Weight (kDa)

4.84

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 80 - 266 2e-41 Xylanase inhibitor N-terminal
Asp PF00026 80 - 435 4.2e-31 Eukaryotic aspartyl protease
TAXi_C PF14541 284 - 435 1.7e-27 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 855
AarI CACCTGC 1 cut(s) 1169
AasI GACNNNNNNGTC 1 cut(s) 911
Acc36I ACCTGC 1 cut(s) 1169
AccB1I GGYRCC 1 cut(s) 209
AccI GTMKAC 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 353
AciI CCGC 6 cut(s) 23, 26, 29, 484, 636, 777
AclWI GGATC 2 cut(s) 377, 986
AcsI RAATTY 2 cut(s) 363, 1171
AcuI CTGAAG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 1389
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 2 cut(s) 436, 451
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 6 cut(s) 217, 1114, 1310, 1323, 1344, 1432
AjiI CACGTC 1 cut(s) 627
AjnI CCWGG 1 cut(s) 1050
AjuI GAANNNNNNNTTGG 2 cut(s) 730, 762
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 4 cut(s) 147, 418, 1239, 1342
AlwI GGATC 2 cut(s) 377, 986
AlwNI CAGNNNCTG 2 cut(s) 58, 569
Ama87I CYCGRG 1 cut(s) 150
Aor13HI TCCGGA 1 cut(s) 353
ApeKI GCWGC 7 cut(s) 5, 49, 75, 130, 566, 688, 1165
ApoI RAATTY 2 cut(s) 363, 1171
AspS9I GGNCC 2 cut(s) 1380, 1423
AsuC2I CCSGG 1 cut(s) 955
AsuHPI GGTGA 4 cut(s) 387, 809, 1066, 1193
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 2 cut(s) 1380, 1423
AxyI CCTNAGG 1 cut(s) 1149
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 151, 395
BbsI GAAGAC 1 cut(s) 711
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 6 cut(s) 36, 87, 142, 578, 700, 1177
BccI CCATC 5 cut(s) 506, 662, 1188, 1214, 1296
BceAI ACGGC 1 cut(s) 1004
BcgI CGANNNNNNTGC 2 cut(s) 1438, 1472
BciT130I CCWGG 1 cut(s) 1052
BcnI CCSGG 1 cut(s) 955
BcoDI GTCTC 4 cut(s) 147, 418, 1239, 1342
BfaI CTAG 3 cut(s) 227, 462, 1350
BfmI CTRYAG 2 cut(s) 50, 1176
BfuAI ACCTGC 1 cut(s) 1169
BisI GCNGC 9 cut(s) 6, 24, 27, 50, 76, 131, 567, 689, 1166
BlsI GCNGC 9 cut(s) 7, 25, 28, 51, 77, 132, 568, 690, 1167
Bme1390I CCNGG 2 cut(s) 955, 1052
Bme18I GGWCC 2 cut(s) 1380, 1423
BmeT110I CYCGRG 1 cut(s) 150
BmgBI CACGTC 1 cut(s) 627
BmgT120I GGNCC 2 cut(s) 1380, 1423
BmiI GGNNCC 4 cut(s) 211, 810, 1381, 1425
BmrFI CCNGG 2 cut(s) 955, 1052
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 5 cut(s) 258, 973, 1092, 1139, 1174
BmuI ACTGGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 2 cut(s) 887, 1063
BpuEI CTTGAG 2 cut(s) 119, 1173
BpuMI CCSGG 1 cut(s) 955
BsaHI GRCGYC 1 cut(s) 1389
BsaI GGTCTC 3 cut(s) 147, 418, 1239
BsaJI CCNNGG 3 cut(s) 934, 1050, 1051
BsaWI WCCGGW 3 cut(s) 335, 353, 1355
BsaXI ACNNNNNCTCC 2 cut(s) 1236, 1266
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 1121
Bse1I ACTGG 3 cut(s) 261, 301, 778
Bse21I CCTNAGG 1 cut(s) 1149
BseAI TCCGGA 1 cut(s) 353
BseBI CCWGG 1 cut(s) 1052
BseDI CCNNGG 3 cut(s) 934, 1050, 1051
BseGI GGATG 4 cut(s) 180, 1130, 1199, 1307
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 5 cut(s) 125, 157, 401, 460, 1163
BseNI ACTGG 3 cut(s) 261, 301, 778
BseXI GCAGC 6 cut(s) 36, 87, 142, 578, 700, 1177
BsgI GTGCAG 3 cut(s) 94, 149, 305
BshNI GGYRCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 395
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 6 cut(s) 83, 336, 354, 954, 1122, 1356
BslFI GGGAC 2 cut(s) 535, 970
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 4 cut(s) 147, 418, 1239, 1342
BsmBI CGTCTC 1 cut(s) 1342
BsmFI GGGAC 2 cut(s) 535, 970
BsmI GAATGC 1 cut(s) 1206
Bso31I GGTCTC 3 cut(s) 147, 418, 1239
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 151, 395
Bsp13I TCCGGA 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 434
Bsp143I GATC 4 cut(s) 382, 801, 991, 1266
BspACI CCGC 6 cut(s) 23, 26, 29, 484, 636, 777
BspCNI CTCAG 5 cut(s) 126, 156, 400, 459, 1162
BspEI TCCGGA 1 cut(s) 353
BspLI GGNNCC 4 cut(s) 211, 810, 1381, 1425
BspMAI CTGCAG 2 cut(s) 54, 1180
BspMI ACCTGC 1 cut(s) 1169
BspPI GGATC 2 cut(s) 377, 986
BspT107I GGYRCC 1 cut(s) 209
BspTNI GGTCTC 3 cut(s) 147, 418, 1239
BsrFI RCCGGY 1 cut(s) 1121
BsrGI TGTACA 1 cut(s) 434
BsrI ACTGG 3 cut(s) 261, 301, 778
BssAI RCCGGY 1 cut(s) 1121
BssECI CCNNGG 3 cut(s) 934, 1050, 1051
BssMI GATC 4 cut(s) 382, 801, 991, 1266
BssNI GRCGYC 1 cut(s) 1389
BssT1I CCWWGG 1 cut(s) 934
Bst2UI CCWGG 1 cut(s) 1052
Bst4CI ACNGT 3 cut(s) 64, 1237, 1319
Bst6I CTCTTC 2 cut(s) 601, 1345
BstACI GRCGYC 1 cut(s) 1389
BstAPI GCANNNNNTGC 2 cut(s) 983, 1184
BstAUI TGTACA 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 634
BstDEI CTNAG 5 cut(s) 134, 143, 387, 446, 1149
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 4 cut(s) 180, 1130, 1199, 1307
BstKTI GATC 4 cut(s) 385, 804, 994, 1269
BstMAI GTCTC 4 cut(s) 147, 418, 1239, 1342
BstMBI GATC 4 cut(s) 382, 801, 991, 1266
BstMWI GCNNNNNNNGC 5 cut(s) 32, 139, 983, 1127, 1184
BstNI CCWGG 1 cut(s) 1052
BstSCI CCNGG 2 cut(s) 953, 1050
BstSFI CTRYAG 2 cut(s) 50, 1176
BstV1I GCAGC 6 cut(s) 36, 87, 142, 578, 700, 1177
BstV2I GAAGAC 1 cut(s) 711
Bsu36I CCTNAGG 1 cut(s) 1149
BtrI CACGTC 1 cut(s) 627
BtsCI GGATG 4 cut(s) 180, 1130, 1199, 1307
BtsIMutI CAGTG 2 cut(s) 771, 1086
BveI ACCTGC 1 cut(s) 1169
Cac8I GCNNGC 1 cut(s) 634
CaiI CAGNNNCTG 2 cut(s) 58, 569
Cfr10I RCCGGY 1 cut(s) 1121
Cfr13I GGNCC 2 cut(s) 1380, 1423
CseI GACGC 2 cut(s) 1324, 1397
Csp6I GTAC 2 cut(s) 435, 450
CviAII CATG 3 cut(s) 167, 1135, 1450
CviQI GTAC 2 cut(s) 435, 450
DdeI CTNAG 5 cut(s) 134, 143, 387, 446, 1149
DpnI GATC 4 cut(s) 384, 803, 993, 1268
DpnII GATC 4 cut(s) 382, 801, 991, 1266
DraI TTTAAA 1 cut(s) 760
DraIII CACNNNGTG 1 cut(s) 127
DrdI GACNNNNNNGTC 1 cut(s) 911
DseDI GACNNNNNNGTC 1 cut(s) 911
Eam1104I CTCTTC 2 cut(s) 601, 1345
EarI CTCTTC 2 cut(s) 601, 1345
Ecl136II GAGCTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 934
Eco24I GRGCYC 2 cut(s) 151, 395
Eco31I GGTCTC 3 cut(s) 147, 418, 1239
Eco47I GGWCC 2 cut(s) 1380, 1423
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 582
Eco81I CCTNAGG 1 cut(s) 1149
Eco88I CYCGRG 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 1423
EcoRI GAATTC 1 cut(s) 1171
EcoRII CCWGG 1 cut(s) 1050
EcoT14I CCWWGG 1 cut(s) 934
EcoT22I ATGCAT 1 cut(s) 1132
EcoT38I GRGCYC 2 cut(s) 151, 395
ErhI CCWWGG 1 cut(s) 934
Esp3I CGTCTC 1 cut(s) 1342
FaeI CATG 3 cut(s) 170, 1138, 1453
FaqI GGGAC 2 cut(s) 535, 970
FatI CATG 3 cut(s) 166, 1134, 1449
FauI CCCGC 2 cut(s) 629, 770
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 9 cut(s) 6, 24, 27, 50, 76, 131, 567, 689, 1166
FokI GGATG 4 cut(s) 187, 1117, 1206, 1314
FriOI GRGCYC 2 cut(s) 151, 395
Fsp4HI GCNGC 9 cut(s) 6, 24, 27, 50, 76, 131, 567, 689, 1166
FspBI CTAG 3 cut(s) 227, 462, 1350
GluI GCNGC 9 cut(s) 6, 24, 27, 50, 76, 131, 567, 689, 1166
GsuI CTGGAG 2 cut(s) 887, 1063
HapII CCGG 6 cut(s) 83, 336, 354, 954, 1122, 1356
HgaI GACGC 2 cut(s) 1324, 1397
Hin1I GRCGYC 1 cut(s) 1389
Hin1II CATG 3 cut(s) 170, 1138, 1453
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HpaII CCGG 6 cut(s) 83, 336, 354, 954, 1122, 1356
HphI GGTGA 4 cut(s) 387, 809, 1066, 1193
Hpy166II GTNNAC 4 cut(s) 193, 437, 452, 1471
Hpy188III TCNNGA 5 cut(s) 98, 354, 866, 1151, 1226
Hpy8I GTNNAC 4 cut(s) 193, 437, 452, 1471
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 223, 1414
HpyCH4III ACNGT 3 cut(s) 64, 1237, 1319
HpyCH4IV ACGT 4 cut(s) 126, 626, 1230, 1294
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 139, 983, 1127, 1184
HpyF3I CTNAG 5 cut(s) 134, 143, 387, 446, 1149
HpySE526I ACGT 4 cut(s) 126, 626, 1230, 1294
Hsp92I GRCGYC 1 cut(s) 1389
Hsp92II CATG 3 cut(s) 170, 1138, 1453
Kpn2I TCCGGA 1 cut(s) 353
Kzo9I GATC 4 cut(s) 382, 801, 991, 1266
LmnI GCTCC 2 cut(s) 375, 739
Lsp1109I GCAGC 6 cut(s) 36, 87, 142, 578, 700, 1177
LweI GCATC 5 cut(s) 258, 973, 1092, 1139, 1174
MaeI CTAG 3 cut(s) 227, 462, 1350
MaeII ACGT 4 cut(s) 126, 626, 1230, 1294
MaeIII GTNAC 5 cut(s) 583, 1033, 1064, 1072, 1231
MalI GATC 4 cut(s) 384, 803, 993, 1268
MboI GATC 4 cut(s) 382, 801, 991, 1266
MboII GAAGA 4 cut(s) 588, 711, 1038, 1332
MfeI CAATTG 1 cut(s) 900
MhlI GDGCHC 2 cut(s) 151, 395
MluCI AATT 5 cut(s) 363, 900, 1008, 1171, 1433
MlyI GAGTC 6 cut(s) 82, 88, 145, 168, 438, 1030
MmeI TCCRAC 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 1132
MroI TCCGGA 1 cut(s) 353
MseI TTAA 5 cut(s) 360, 759, 860, 1142, 1371
MspA1I CMGCKG 3 cut(s) 133, 569, 715
MspI CCGG 6 cut(s) 83, 336, 354, 954, 1122, 1356
MspR9I CCNGG 2 cut(s) 955, 1052
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 1206
MvaI CCWGG 1 cut(s) 1052
MwoI GCNNNNNNNGC 5 cut(s) 32, 139, 983, 1127, 1184
NciI CCSGG 1 cut(s) 955
NdeII GATC 4 cut(s) 382, 801, 991, 1266
NlaIII CATG 3 cut(s) 170, 1138, 1453
NlaIV GGNNCC 4 cut(s) 211, 810, 1381, 1425
NmuCI GTSAC 3 cut(s) 583, 1033, 1072
NsiI ATGCAT 1 cut(s) 1132
PaqCI CACCTGC 1 cut(s) 1169
PasI CCCWGGG 1 cut(s) 1051
PctI GAATGC 1 cut(s) 1206
PfeI GAWTC 5 cut(s) 118, 458, 470, 681, 950
PflFI GACNNNGTC 2 cut(s) 158, 1250
PfoI TCCNGGA 1 cut(s) 953
PkrI GCNGC 9 cut(s) 7, 25, 28, 51, 77, 132, 568, 690, 1167
PleI GAGTC 6 cut(s) 82, 88, 144, 167, 438, 1030
PpsI GAGTC 6 cut(s) 82, 88, 144, 167, 438, 1030
PpuMI RGGWCCY 1 cut(s) 1423
PsiI TTATAA 1 cut(s) 855
Psp124BI GAGCTC 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 1423
Psp6I CCWGG 1 cut(s) 1050
PspGI CCWGG 1 cut(s) 1050
PspN4I GGNNCC 4 cut(s) 211, 810, 1381, 1425
PspPI GGNCC 2 cut(s) 1380, 1423
PspPPI RGGWCCY 1 cut(s) 1423
PstI CTGCAG 2 cut(s) 54, 1180
PstNI CAGNNNCTG 2 cut(s) 58, 569
PsyI GACNNNGTC 2 cut(s) 158, 1250
PvuII CAGCTG 3 cut(s) 133, 569, 715
RsaI GTAC 2 cut(s) 436, 451
RsaNI GTAC 2 cut(s) 435, 450
SacI GAGCTC 1 cut(s) 395
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 5 cut(s) 360, 759, 860, 1142, 1371
SatI GCNGC 9 cut(s) 6, 24, 27, 50, 76, 131, 567, 689, 1166
Sau3AI GATC 4 cut(s) 382, 801, 991, 1266
Sau96I GGNCC 2 cut(s) 1380, 1423
SchI GAGTC 6 cut(s) 82, 88, 145, 168, 438, 1030
ScrFI CCNGG 2 cut(s) 955, 1052
SduI GDGCHC 2 cut(s) 151, 395
SfaNI GCATC 5 cut(s) 258, 973, 1092, 1139, 1174
SfcI CTRYAG 2 cut(s) 50, 1176
SinI GGWCC 2 cut(s) 1380, 1423
SmlI CTYRAG 2 cut(s) 98, 1188
SmoI CTYRAG 2 cut(s) 98, 1188
Sse9I AATT 5 cut(s) 363, 900, 1008, 1171, 1433
SsiI CCGC 6 cut(s) 23, 26, 29, 484, 636, 777
SspI AATATT 2 cut(s) 42, 278
SspMI CTAG 3 cut(s) 227, 462, 1350
SstI GAGCTC 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 953, 1050
StyI CCWWGG 1 cut(s) 934
TaaI ACNGT 3 cut(s) 64, 1237, 1319
TaiI ACGT 4 cut(s) 129, 629, 1233, 1297
TaqI TCGA 2 cut(s) 192, 666
TaqII GACCGA 1 cut(s) 171
TasI AATT 5 cut(s) 363, 900, 1008, 1171, 1433
TatI WGTACW 2 cut(s) 434, 449
TauI GCSGC 2 cut(s) 26, 29
TfiI GAWTC 5 cut(s) 118, 458, 470, 681, 950
Tru1I TTAA 5 cut(s) 360, 759, 860, 1142, 1371
Tru9I TTAA 5 cut(s) 360, 759, 860, 1142, 1371
TscAI CASTG 2 cut(s) 778, 1093
TseFI GTSAC 3 cut(s) 583, 1033, 1072
TseI GCWGC 7 cut(s) 5, 49, 75, 130, 566, 688, 1165
Tsp45I GTSAC 3 cut(s) 583, 1033, 1072
TspDTI ATGAA 2 cut(s) 1353, 1401
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 2 cut(s) 778, 1093
Tth111I GACNNNGTC 2 cut(s) 158, 1250
VpaK11BI GGWCC 2 cut(s) 1380, 1423
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 2 cut(s) 363, 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 3 cut(s) 227, 462, 1350
Zsp2I ATGCAT 1 cut(s) 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.