Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029150.1

Orthogroup ID

OG0002560

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2331

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029150.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 235 bp

ctttccggcgactctgactcttgagagagcttttccgacgaatcacaacgtgcagctgagtcagctcagagcccgagaccgagtcaggcatggcaggatgttgagtggtgtcgtcgagttccctatcggaggcaccttcaatccatacttagtcggattgataccggaagtgatgctttgtgggttggttgcaattcctgttccggttgcccccaatcctccggacttaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

77

Amino Acids

8.42

Weight (kDa)

9.3

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22850
fragaria_vesca	FvH4_3g30200 FvH4_3g30200 FvH4_3g30200 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560
malus_domestica	MD02G1291400.v1.1 MD03G1130700.v1.1 MD11G1152500.v1.1
prunus_persica	Prupe.2G031400_v2.0.a1 Prupe.6G115500_v2.0.a1 Prupe.6G115500_v2.0.a1
pyrus_communis	pycom02g24630 pycom02g24640 pycom11g12500
rosa_chinensis	RchiOBHm_Chr1g0321281 RchiOBHm_Chr5g0055981
rosa_laevigata	RLG00000030431 RLG00000035040
rosa_multiflora	Rmu_co8118894.1_g000001 Rmu_sc0029150.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433920 Rroxscaffold_1G00024290 Rroxscaffold_4G00327850
rosa_rugosa	Rorug01G0031900 Rorug05G0296800 Rorug05G0296900
rosa_samantha	Rh1AG044000 Rh1BG041700 Rh1CG046600 Rh1DG051200 Rh5AG367900 Rh5BG378300 Rh5CG401700 Rh5DG391400
rosa_wichuraiana	Rw0G006980 Rw1G003880 Rw5G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	221
AdeI	CACNNNGTG	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	140
AluBI	AGCT	3 cut(s)	30, 56, 65
AluI	AGCT	3 cut(s)	30, 56, 65
Alw26I	GTCTC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	73
Aor13HI	TCCGGA	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	70
BsaWI	WCCGGW	3 cut(s)	164, 203, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	221
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	48, 80
BseXI	GCAGC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	4 cut(s)	6, 165, 204, 222
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	70
Bso31I	GGTCTC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp13I	TCCGGA	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	49, 79
BspEI	TCCGGA	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	70
BstDEI	CTNAG	3 cut(s)	57, 66, 149
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	103
CviAII	CATG	1 cut(s)	90
CviJI	RGCY	4 cut(s)	30, 56, 65, 72
CviKI_1	RGCY	4 cut(s)	30, 56, 65, 72
DdeI	CTNAG	3 cut(s)	57, 66, 149
DraIII	CACNNNGTG	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	1 cut(s)	93
FaiI	YATR	2 cut(s)	91, 146
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FatI	CATG	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HapII	CCGG	4 cut(s)	6, 165, 204, 222
Hin1II	CATG	1 cut(s)	93
HinfI	GANTC	5 cut(s)	11, 17, 41, 59, 82
HpaII	CCGG	4 cut(s)	6, 165, 204, 222
Hpy188I	TCNGA	5 cut(s)	16, 37, 69, 129, 156
Hpy188III	TCNNGA	2 cut(s)	21, 222
Hpy99I	CGWCG	2 cut(s)	41, 117
HpyAV	CCTTC	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	53, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	3 cut(s)	57, 66, 149
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	93
Kpn2I	TCCGGA	1 cut(s)	221
LpnPI	CCDG	6 cut(s)	19, 71, 80, 178, 211, 217
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	163
MaeII	ACGT	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	1 cut(s)	193
MlyI	GAGTC	4 cut(s)	5, 11, 68, 91
MmeI	TCCRAC	2 cut(s)	60, 134
MnlI	CCTC	2 cut(s)	123, 229
MroI	TCCGGA	1 cut(s)	221
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	4 cut(s)	6, 165, 204, 222
MwoI	GCNNNNNNNGC	1 cut(s)	62
NlaIII	CATG	1 cut(s)	93
NlaIV	GGNNCC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	4 cut(s)	5, 11, 67, 90
PpsI	GAGTC	4 cut(s)	5, 11, 67, 90
PspN4I	GGNNCC	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	54
SchI	GAGTC	4 cut(s)	5, 11, 68, 91
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	5 cut(s)	32, 52, 58, 67, 138
SfaNI	GCATC	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	115
TaqII	GACCGA	1 cut(s)	94
TasI	AATT	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	1 cut(s)	53
Tth111I	GACNNNGTC	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.