pycom02g24630

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002560
Physical Location & Seq
Reverse (-)
22770787 .. 22771812
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g24630.4

Sequence Viewer

Length: 354 bp
ATGATTCTAAGACCCGAGGACTACCTTTTACAGCAGAACTCTATGAATGGTGCTGAAGTATGGTGCATCGGCATCGGGAAAAATCAGGGTCAACAAACTGTATTAGGAGACCTCGTCTTAAAAGACAAAATCATTGTGTATGATTTGGCGAATCAAAGGATTGGTTGGGCTCAATATAACTGTTCAAAGTCAGTCAGCGTTTCTACGAATACAAGTACCGGAACTGCATCTGTTAATCCAGGGTCGATAGGCCTTAGTGGTTCAGCGCGCAACGACCCCTTCAAGCTGATGACAACAAGCATGATGATTTTCCTTGTTCTCACGTCAATCATTCACATTGTCCCATCGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

118

Amino Acids

12.68

Weight (kDa)

7.78

Isoelectric Point (pI)

20.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 217
AgsI TTSAA 2 cut(s) 186, 283
AjiI CACGTC 1 cut(s) 324
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 1 cut(s) 250
AspLEI GCGC 2 cut(s) 268, 270
AvaI CYCGRG 1 cut(s) 14
BanII GRGCYC 1 cut(s) 172
BccI CCATC 1 cut(s) 352
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 14
BmgBI CACGTC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 3 cut(s) 75, 81, 236
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 15, 239
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 15, 239
BsePI GCGCGC 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 1 cut(s) 252
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 172
BspANI GGCC 1 cut(s) 252
BspFNI CGCG 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 15, 239
BssHII GCGCGC 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 100, 182
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 8, 254
BstFNI CGCG 1 cut(s) 268
BstHHI GCGC 2 cut(s) 268, 270
BstMAI GTCTC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 350
BstUI CGCG 1 cut(s) 268
BsuRI GGCC 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 330
BtrI CACGTC 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 2 cut(s) 268, 270
Csp6I GTAC 1 cut(s) 216
CviAII CATG 1 cut(s) 301
CviJI RGCY 3 cut(s) 170, 252, 286
CviKI_1 RGCY 3 cut(s) 170, 252, 286
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 2 cut(s) 8, 254
Eco147I AGGCCT 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 172
FaeI CATG 1 cut(s) 304
FaiI YATR 5 cut(s) 44, 61, 141, 177, 302
FaqI GGGAC 1 cut(s) 326
FatI CATG 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 172
GlaI GCGC 2 cut(s) 267, 269
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 219
HhaI GCGC 2 cut(s) 268, 270
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 2 cut(s) 266, 268
HinP1I GCGC 2 cut(s) 266, 268
HincII GTYRAC 1 cut(s) 92
HindII GTYRAC 1 cut(s) 92
HinfI GANTC 2 cut(s) 4, 151
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 92
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 2 cut(s) 100, 182
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 66, 227
HpyF3I CTNAG 2 cut(s) 8, 254
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 2 cut(s) 266, 268
LpnPI CCDG 4 cut(s) 71, 225, 232, 252
LweI GCATC 3 cut(s) 75, 81, 236
MaeII ACGT 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 172
MnlI CCTC 2 cut(s) 10, 122
MseI TTAA 2 cut(s) 119, 234
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 268
NlaIII CATG 1 cut(s) 304
PauI GCGCGC 1 cut(s) 266
PceI AGGCCT 1 cut(s) 252
PfeI GAWTC 2 cut(s) 4, 151
PflFI GACNNNGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 113
PteI GCGCGC 1 cut(s) 266
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 119, 234
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 172
SetI ASST 4 cut(s) 27, 114, 288, 326
SfaNI GCATC 3 cut(s) 75, 81, 236
SfcI CTRYAG 1 cut(s) 350
SseBI AGGCCT 1 cut(s) 252
StuI AGGCCT 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 2 cut(s) 100, 182
TaiI ACGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 245
TfiI GAWTC 2 cut(s) 4, 151
Tru1I TTAA 2 cut(s) 119, 234
Tru9I TTAA 2 cut(s) 119, 234
TspDTI ATGAA 1 cut(s) 59
Tth111I GACNNNGTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.