Rh5CG401700

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
53437365 .. 53441695
4331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG401700.1

Sequence Viewer

Length: 1278 bp
ATGGACTTTCCGGCCGGAATTGTGATCGCCGGAGCAATTCTGATGTCGGCGGCGGTGGTGCTGTGTAGCTTTCCGTCGACGCTGGTGCTGGAGAGGGCTTTTCCGGCCGACCACCGAGTGCCGCTGAGTCAACTCAGAGCTCGTGACAGAGTCCGGCATGGCCGAATGCTGCAGTCCTCAAACGGCGTCGCTGATTTCCCCGTCGAGGGAACCTTCGATCCGTTCCGGGTCGGGCTTTATTATACTAAACTGCAACTGGGATCTCCTCCAAGAGACTATTATGTGCAAATTGATACCGGAAGTGATGTTCTGTGGGTCAGTTGCGGTTCTTGCAATGGTTGTCCCGAAACGAGTGGACTCCCGATTCAGCTCAATTCCTTTGATCCTGGACGCTCATCAACGTCACAGTTCATTTCTTGTACGGATCGAAGATGCAGTCTCGGGGTTCAGTCCTCAGATTCTGCTTGTTCCACTCAGAATAACCAGTGTTCATACACATTTCAGTATGGAGATGGCAGTGGGACATCAGGCTATTATGTTTCGGACTTGTTGCACCTTCAGACCATTCTCGAGGGTTCTATGACCCAAAATTCTTCAGCTTCCATAGTCTTTGGGTGTAGTACCTTGCAGACTGGAGACTTGACAAAGTCGGATAGAGCAGTTGATGGGATCTTTGGGTTTGGCCAGCAGGGTATGTCTGTCATCTCTCAATTGGCTTCACAAGGAGTTGCACCAAATGTCTTCTCCCACTGCTTGAGGGGAGATGCTAATGGTGGAGGTATATTAGTTATCGGCGAGATTGTGGAGCCAAATATAGTCTACAGCCCACTTGTTCCATCACAGCCTCATTATAACTTGAATCTTCAGAGCATTTCTGTCAACGGACAAGCACTGCCCATTGATCCAACAGTGTTTGCAACATCAAGCAACCGAGGAACAATAGTTGATTCTGGTACAACTTTGGCATACCTTGCAGCAGAAGCTTATGATCCTTTTATAAATGCCATTACTACTACTGTTTCACAATCAGTGCGCCCCGTTGTTTCCAATGGAAACCAGTGTTATTTAATCACCACCAGTATGAATGATATATTTCCTCAAGTGGCTTTAAACTTTGCTGGTGGTGCATCTATGATTCTGAGACCTCAGGATTACCTTATACAGCAGAGTTCTGTTGGTGGTGCTGCAAGGTGGTGCATTGGCTTACAGAAAATTCAAGGTTCAGGAATCACGATTTTAGGAGGTACAACACCAAACTGGAAACTTATCATTGACTGA

Protein Analysis

425

Amino Acids

45.15

Weight (kDa)

5.07

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 80 - 265 1.8e-42 Xylanase inhibitor N-terminal
Asp PF00026 80 - 415 2.1e-24 Eukaryotic aspartyl protease
TAXi_C PF14541 283 - 416 5.6e-19 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 852, 998
AccI GTMKAC 2 cut(s) 77, 819
AciI CCGC 4 cut(s) 50, 53, 122, 324
AclWI GGATC 7 cut(s) 212, 268, 377, 432, 677, 896, 983
AcoI YGGCCR 4 cut(s) 12, 105, 160, 682
AcsI RAATTY 2 cut(s) 589, 1212
AcuI CTGAAG 3 cut(s) 542, 579, 848
AcyI GRCGYC 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 4 cut(s) 421, 622, 955, 1246
AfiI CCNNNNNNNGG 2 cut(s) 205, 206
AgsI TTSAA 2 cut(s) 859, 1217
AjnI CCWGG 1 cut(s) 385
AloI GAACNNNNNNTCC 4 cut(s) 202, 234, 291, 323
AluBI AGCT 5 cut(s) 69, 140, 370, 599, 983
AluI AGCT 5 cut(s) 69, 140, 370, 599, 983
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 4 cut(s) 267, 443, 630, 1135
AlwI GGATC 7 cut(s) 212, 268, 377, 432, 677, 896, 983
AlwNI CAGNNNCTG 1 cut(s) 461
Ama87I CYCGRG 2 cut(s) 440, 569
AoxI GGCC 4 cut(s) 12, 105, 160, 682
ApeKI GCWGC 3 cut(s) 169, 974, 1184
ApoI RAATTY 2 cut(s) 589, 1212
ArsI GACNNNNNNTTYG 2 cut(s) 421, 453
AspLEI GCGC 1 cut(s) 1035
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 1063
AvaI CYCGRG 2 cut(s) 440, 569
AxyI CCTNAGG 1 cut(s) 1146
BalI TGGCCA 1 cut(s) 684
BanII GRGCYC 1 cut(s) 142
BauI CACGAG 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 733
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 3 cut(s) 156, 986, 1171
BccI CCATC 3 cut(s) 506, 659, 844
BceAI ACGGC 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 1 cut(s) 387
BcnI CCSGG 1 cut(s) 227
BcoDI GTCTC 4 cut(s) 267, 443, 630, 1135
BfmI CTRYAG 2 cut(s) 170, 820
BisI GCNGC 5 cut(s) 51, 122, 170, 975, 1185
BlsI GCNGC 5 cut(s) 52, 123, 171, 976, 1186
Bme1390I CCNGG 2 cut(s) 227, 387
BmeT110I CYCGRG 2 cut(s) 440, 569
BmiI GGNNCC 2 cut(s) 211, 807
BmrFI CCNGG 2 cut(s) 227, 387
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 3 cut(s) 422, 754, 1136
BmuI ACTGGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 733
BpmI CTGGAG 2 cut(s) 110, 654
BpuEI CTTGAG 2 cut(s) 775, 1083
BpuMI CCSGG 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 1135
BsaJI CCNNGG 1 cut(s) 931
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 206
Bse1I ACTGG 6 cut(s) 261, 484, 637, 1057, 1077, 1262
Bse21I CCTNAGG 1 cut(s) 1146
Bse3DI GCAATG 1 cut(s) 340
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 931
BseLI CCNNNNNNNGG 2 cut(s) 205, 206
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 6 cut(s) 116, 148, 468, 488, 1130, 1160
BseNI ACTGG 6 cut(s) 261, 484, 637, 1057, 1077, 1262
BseRI GAGGAG 1 cut(s) 255
BseX3I CGGCCG 2 cut(s) 12, 105
BseXI GCAGC 3 cut(s) 156, 986, 1171
Bsh1285I CGRYCG 2 cut(s) 15, 108
BshFI GGCC 4 cut(s) 14, 107, 162, 684
BsiEI CGRYCG 2 cut(s) 15, 108
BsiHKAI GWGCWC 1 cut(s) 142
BsiHKCI CYCGRG 2 cut(s) 440, 569
BsiSI CCGG 7 cut(s) 11, 15, 30, 104, 154, 226, 297
BslFI GGGAC 2 cut(s) 327, 535
BslI CCNNNNNNNGG 2 cut(s) 205, 206
BsmAI GTCTC 4 cut(s) 267, 443, 630, 1135
BsmFI GGGAC 2 cut(s) 327, 535
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 4 cut(s) 14, 107, 162, 684
Bso31I GGTCTC 1 cut(s) 1135
BsoBI CYCGRG 2 cut(s) 440, 569
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 8 cut(s) 24, 217, 260, 382, 424, 669, 901, 988
BspACI CCGC 4 cut(s) 50, 53, 122, 324
BspANI GGCC 4 cut(s) 14, 107, 162, 684
BspCNI CTCAG 6 cut(s) 117, 147, 467, 487, 1131, 1159
BspLI GGNNCC 2 cut(s) 211, 807
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 7 cut(s) 212, 268, 377, 432, 677, 896, 983
BspTNI GGTCTC 1 cut(s) 1135
BsrDI GCAATG 1 cut(s) 340
BsrI ACTGG 6 cut(s) 261, 484, 637, 1057, 1077, 1262
BssECI CCNNGG 1 cut(s) 931
BssMI GATC 8 cut(s) 24, 217, 260, 382, 424, 669, 901, 988
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 3 cut(s) 408, 910, 1018
BstACI GRCGYC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 971
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 6 cut(s) 125, 134, 454, 474, 1139, 1146
BstHHI GCGC 1 cut(s) 1035
BstKTI GATC 8 cut(s) 27, 220, 263, 385, 427, 672, 904, 991
BstMAI GTCTC 4 cut(s) 267, 443, 630, 1135
BstMBI GATC 8 cut(s) 24, 217, 260, 382, 424, 669, 901, 988
BstMCI CGRYCG 2 cut(s) 15, 108
BstMWI GCNNNNNNNGC 5 cut(s) 104, 330, 971, 980, 1124
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 225, 385
BstSFI CTRYAG 2 cut(s) 170, 820
BstV1I GCAGC 3 cut(s) 156, 986, 1171
BstV2I GAAGAC 1 cut(s) 733
BstX2I RGATCY 2 cut(s) 260, 669
BstYI RGATCY 2 cut(s) 260, 669
BstZI CGGCCG 2 cut(s) 12, 105
Bsu36I CCTNAGG 1 cut(s) 1146
BsuRI GGCC 4 cut(s) 14, 107, 162, 684
BtsI GCAGTG 3 cut(s) 523, 748, 890
BtsIMutI CAGTG 7 cut(s) 491, 523, 748, 890, 915, 1035, 1064
Cac8I GCNNGC 1 cut(s) 686
CaiI CAGNNNCTG 1 cut(s) 461
CfoI GCGC 1 cut(s) 1035
CseI GACGC 3 cut(s) 88, 175, 399
Csp6I GTAC 4 cut(s) 420, 621, 954, 1245
CviAII CATG 1 cut(s) 158
CviQI GTAC 4 cut(s) 420, 621, 954, 1245
DdeI CTNAG 6 cut(s) 125, 134, 454, 474, 1139, 1146
DpnI GATC 8 cut(s) 26, 219, 262, 384, 426, 671, 903, 990
DpnII GATC 8 cut(s) 24, 217, 260, 382, 424, 669, 901, 988
DraI TTTAAA 1 cut(s) 1110
DraIII CACNNNGTG 1 cut(s) 118
EaeI YGGCCR 4 cut(s) 12, 105, 160, 682
EagI CGGCCG 2 cut(s) 12, 105
Ecl136II GAGCTC 1 cut(s) 140
EclXI CGGCCG 2 cut(s) 12, 105
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 1135
Eco52I CGGCCG 2 cut(s) 12, 105
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 3 cut(s) 542, 579, 848
Eco81I CCTNAGG 1 cut(s) 1146
Eco88I CYCGRG 2 cut(s) 440, 569
EcoICRI GAGCTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 1 cut(s) 161
FaqI GGGAC 2 cut(s) 327, 535
FatI CATG 1 cut(s) 157
FblI GTMKAC 2 cut(s) 77, 819
Fnu4HI GCNGC 5 cut(s) 51, 122, 170, 975, 1185
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 5 cut(s) 51, 122, 170, 975, 1185
GlaI GCGC 1 cut(s) 1034
GluI GCNGC 5 cut(s) 51, 122, 170, 975, 1185
GsuI CTGGAG 2 cut(s) 110, 654
HaeIII GGCC 4 cut(s) 14, 107, 162, 684
HapII CCGG 7 cut(s) 11, 15, 30, 104, 154, 226, 297
HgaI GACGC 3 cut(s) 88, 175, 399
HhaI GCGC 1 cut(s) 1035
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 1 cut(s) 1033
HinP1I GCGC 1 cut(s) 1033
HincII GTYRAC 3 cut(s) 78, 131, 880
HindII GTYRAC 3 cut(s) 78, 131, 880
HindIII AAGCTT 1 cut(s) 981
HinfI GANTC 9 cut(s) 127, 150, 357, 364, 458, 859, 947, 1135, 1227
HpaII CCGG 7 cut(s) 11, 15, 30, 104, 154, 226, 297
HphI GGTGA 1 cut(s) 1063
Hpy166II GTNNAC 5 cut(s) 78, 131, 356, 820, 880
Hpy188I TCNGA 9 cut(s) 42, 137, 457, 477, 544, 561, 652, 867, 1140
Hpy188III TCNNGA 7 cut(s) 143, 344, 361, 569, 1148, 1224, 1231
Hpy8I GTNNAC 5 cut(s) 78, 131, 356, 820, 880
Hpy99I CGWCG 4 cut(s) 79, 82, 191, 206
HpyAV CCTTC 2 cut(s) 223, 566
HpyCH4III ACNGT 3 cut(s) 408, 910, 1018
HpyCH4IV ACGT 1 cut(s) 401
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 330, 971, 980, 1124
HpyF3I CTNAG 6 cut(s) 125, 134, 454, 474, 1139, 1146
HpySE526I ACGT 1 cut(s) 401
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 1 cut(s) 1033
Kzo9I GATC 8 cut(s) 24, 217, 260, 382, 424, 669, 901, 988
LmnI GCTCC 2 cut(s) 32, 805
Lsp1109I GCAGC 3 cut(s) 156, 986, 1171
LweI GCATC 3 cut(s) 422, 754, 1136
MaeII ACGT 1 cut(s) 401
MaeIII GTNAC 2 cut(s) 143, 402
MalI GATC 8 cut(s) 26, 219, 262, 384, 426, 671, 903, 990
MboI GATC 8 cut(s) 24, 217, 260, 382, 424, 669, 901, 988
MboII GAAGA 4 cut(s) 441, 585, 733, 854
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 2 cut(s) 260, 669
MhlI GDGCHC 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 7 cut(s) 18, 36, 288, 373, 589, 710, 1212
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 3 cut(s) 136, 159, 351
MmeI TCCRAC 2 cut(s) 630, 929
Mox20I TGGCCA 1 cut(s) 684
MscI TGGCCA 1 cut(s) 684
MseI TTAA 2 cut(s) 1067, 1109
MslI CAYNNNNRTG 1 cut(s) 1079
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 7 cut(s) 11, 15, 30, 104, 154, 226, 297
MspR9I CCNGG 2 cut(s) 227, 387
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 171
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 5 cut(s) 104, 330, 971, 980, 1124
NciI CCSGG 1 cut(s) 227
NdeII GATC 8 cut(s) 24, 217, 260, 382, 424, 669, 901, 988
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 211, 807
NmuCI GTSAC 2 cut(s) 143, 402
PaeR7I CTCGAG 1 cut(s) 569
PctI GAATGC 1 cut(s) 171
PfeI GAWTC 6 cut(s) 364, 458, 859, 947, 1135, 1227
PflFI GACNNNGTC 2 cut(s) 149, 646
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 5 cut(s) 52, 123, 171, 976, 1186
PleI GAGTC 3 cut(s) 135, 158, 351
PpsI GAGTC 3 cut(s) 135, 158, 351
PsiI TTATAA 2 cut(s) 852, 998
Psp124BI GAGCTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 2 cut(s) 211, 807
PstI CTGCAG 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 461
PsuI RGATCY 2 cut(s) 260, 669
PsyI GACNNNGTC 2 cut(s) 149, 646
RsaI GTAC 4 cut(s) 421, 622, 955, 1246
RsaNI GTAC 4 cut(s) 420, 621, 954, 1245
RseI CAYNNNNRTG 1 cut(s) 1079
SacI GAGCTC 1 cut(s) 142
SalI GTCGAC 1 cut(s) 76
SaqAI TTAA 2 cut(s) 1067, 1109
SatI GCNGC 5 cut(s) 51, 122, 170, 975, 1185
Sau3AI GATC 8 cut(s) 24, 217, 260, 382, 424, 669, 901, 988
SchI GAGTC 3 cut(s) 136, 159, 351
ScrFI CCNGG 2 cut(s) 227, 387
SduI GDGCHC 1 cut(s) 142
SfaNI GCATC 3 cut(s) 422, 754, 1136
SfcI CTRYAG 2 cut(s) 170, 820
Sfr274I CTCGAG 1 cut(s) 569
SgrDI CGTCGACG 1 cut(s) 76
SlaI CTCGAG 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 1079
SmlI CTYRAG 3 cut(s) 569, 754, 1098
SmoI CTYRAG 3 cut(s) 569, 754, 1098
Sse9I AATT 7 cut(s) 18, 36, 288, 373, 589, 710, 1212
SsiI CCGC 4 cut(s) 50, 53, 122, 324
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 225, 385
TaaI ACNGT 3 cut(s) 408, 910, 1018
TaiI ACGT 1 cut(s) 404
TaqI TCGA 5 cut(s) 77, 204, 216, 427, 570
TasI AATT 7 cut(s) 18, 36, 288, 373, 589, 710, 1212
TauI GCSGC 2 cut(s) 53, 124
TfiI GAWTC 6 cut(s) 364, 458, 859, 947, 1135, 1227
Tru1I TTAA 2 cut(s) 1067, 1109
Tru9I TTAA 2 cut(s) 1067, 1109
TscAI CASTG 7 cut(s) 491, 523, 755, 897, 915, 1035, 1064
TseFI GTSAC 2 cut(s) 143, 402
TseI GCWGC 3 cut(s) 169, 974, 1184
Tsp45I GTSAC 2 cut(s) 143, 402
TspDTI ATGAA 3 cut(s) 400, 480, 1097
TspGWI ACGGA 4 cut(s) 63, 210, 437, 897
TspRI CASTG 7 cut(s) 491, 523, 755, 897, 915, 1035, 1064
Tth111I GACNNNGTC 2 cut(s) 149, 646
XapI RAATTY 2 cut(s) 589, 1212
XhoI CTCGAG 1 cut(s) 569
XmiI GTMKAC 2 cut(s) 77, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.