Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002560

Physical Location & Seq

Genomic Coordinates Forward (+)

7597957 .. 7603146

Gene Structure 5190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG044000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCGGCAACTTTGTTTCGGGCGGTGGCGGTCGCCATAATATTATTGCTGCAGTTTCTGATGGTGGTTCTGTGCAGCTTTCCGGCGACTCTGACTCTTGAGAGAGCTTTTCCGACGAATCACAACGTGCAGCTGAGTCAGCTCAGAGCCCGAGACCGAGTCAGGCATGGGAGGATGTTGAGTGGTGTCGTCGAGTTCCCTATCGGAGGCACCTTCAATCCATACTTAGTCGGGCTATATTTTACAAGCGTCAAACTGGGAACTCCTGCAACAGAATTTTATGTGCAGATTGATACCGGAAGTGATGCTTTGTGGGTTGGTTGCAATTCCTGTTCCGGTTGCCCCCAATCCTCCGGACTTAAAATTCAGCTCCATACTTTTGATCCTCAGACCTCTCCAACTGCTTCGGTGGTCTCCTGTTCTGATAAAATATGTACACTTGGACTCGAAACACAAGATTCTAGCTGTGATTCACAAAATAAGCGGTGTTCTTACACATTCCAATACGGAGATGGAAGTGGGACATCAGGCTATTATGTATCAGACTTATTACATTTTGATACAGCAGCTGGTAATCAGTCTGCGACATCAAACTCTTCAGCCTCCATTGTCTTTGGGTGTAGCACGTCAGCAAGCGGGGTGTTGCAGAAAACAGATAGAGCAGTCGATGGGATTTTCGGATTCGGGCAGCAAGAAATGTCTGTCATCTCACAGCTGTCTTCACAGGGAATAGCTCCAAAAGTATTTTCTCATTGCTTTAAAGGAGATGACACTGGCGGGGGTATAATGGTTCTCGGTGAGATCGTGGAACCTAACATTGTTTATACCCCACTTGTCCAAAATCAGCCTCATTATAACTTAAATCTGGAGAGCATTAGTGTTGGTGGTCAAACATTACCAATTGACCAATCAGTCTTTGCAACATCAAGCAACCAAGGAACGATAGTTGATTCTGGGACAACTTTGGCATACCTTGCACAAGATGCCTATGATCCTTTTGTCAACGCAATTACAAGTGCCGTTTCACAATCTGTGACTCCTGTTTCTTCCCAGGAAGAACAATGTTACATAGTCACCTCCAGCATCAATGATACATTTCCCCAAGTTAGTTTGAACTTCGCTGGTAATGCATCCATGATACTAAGACCTGAGGACTACCTGTTGCAGCAGAATTCTGCAGGTGATGCTCAAGGATGGTGCATTGGCATTCAGAAAAGTGATGGTCAAGATATAACTGTATTGGGAGACCTCGTCCTAAAAGACAAGATCATTGTCTATGACTTGGCTAATCAACGTATTGGATGGGTTCAATACGACTGTAAGTCACGATTATTTGTTTTCTATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

449

Amino Acids

48.22

Weight (kDa)

4.68

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	80 - 266	6.1e-41	Xylanase inhibitor N-terminal
Asp	PF00026	80 - 435	6.4e-32	Eukaryotic aspartyl protease
TAXi_C	PF14541	284 - 435	1.7e-27	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22850
fragaria_vesca	FvH4_3g30200 FvH4_3g30200 FvH4_3g30200 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560
malus_domestica	MD02G1291400.v1.1 MD03G1130700.v1.1 MD11G1152500.v1.1
prunus_persica	Prupe.2G031400_v2.0.a1 Prupe.6G115500_v2.0.a1 Prupe.6G115500_v2.0.a1
pyrus_communis	pycom02g24630 pycom02g24640 pycom11g12500
rosa_chinensis	RchiOBHm_Chr1g0321281 RchiOBHm_Chr5g0055981
rosa_laevigata	RLG00000030431 RLG00000035040
rosa_multiflora	Rmu_co8118894.1_g000001 Rmu_sc0029150.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433920 Rroxscaffold_1G00024290 Rroxscaffold_4G00327850
rosa_rugosa	Rorug01G0031900 Rorug05G0296800 Rorug05G0296900
rosa_samantha	Rh1AG044000 Rh1BG041700 Rh1CG046600 Rh1DG051200 Rh5AG367900 Rh5BG378300 Rh5CG401700 Rh5DG391400
rosa_wichuraiana	Rw0G006980 Rw1G003880 Rw5G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AarI	CACCTGC	1 cut(s)	1169
AasI	GACNNNNNNGTC	1 cut(s)	911
Acc36I	ACCTGC	1 cut(s)	1169
AccB1I	GGYRCC	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	353
AciI	CCGC	6 cut(s)	5, 23, 29, 484, 636, 777
AclWI	GGATC	2 cut(s)	377, 986
AcsI	RAATTY	3 cut(s)	275, 363, 1171
AcuI	CTGAAG	1 cut(s)	582
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	217, 1114, 1310
AhdI	GACNNNNNGTC	1 cut(s)	1321
AjiI	CACGTC	1 cut(s)	627
AjnI	CCWGG	1 cut(s)	1050
AjuI	GAANNNNNNNTTGG	2 cut(s)	730, 762
AluBI	AGCT	9 cut(s)	78, 107, 133, 142, 370, 465, 569, 715, 734
AluI	AGCT	9 cut(s)	78, 107, 133, 142, 370, 465, 569, 715, 734
Alw26I	GTCTC	3 cut(s)	147, 418, 1239
AlwI	GGATC	2 cut(s)	377, 986
AlwNI	CAGNNNCTG	2 cut(s)	58, 569
Ama87I	CYCGRG	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	353
ApeKI	GCWGC	6 cut(s)	49, 75, 130, 566, 688, 1165
ApoI	RAATTY	3 cut(s)	275, 363, 1171
AsuHPI	GGTGA	3 cut(s)	809, 1066, 1193
AvaI	CYCGRG	1 cut(s)	150
AxyI	CCTNAGG	1 cut(s)	1149
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	711
BbvI	GCAGC	6 cut(s)	36, 87, 142, 578, 700, 1177
BccI	CCATC	6 cut(s)	55, 506, 662, 1188, 1214, 1296
BceAI	ACGGC	1 cut(s)	1004
BciT130I	CCWGG	1 cut(s)	1052
BcoDI	GTCTC	3 cut(s)	147, 418, 1239
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	2 cut(s)	50, 1176
BfuAI	ACCTGC	1 cut(s)	1169
BisI	GCNGC	7 cut(s)	6, 50, 76, 131, 567, 689, 1166
BlsI	GCNGC	7 cut(s)	7, 51, 77, 132, 568, 690, 1167
Bme1390I	CCNGG	1 cut(s)	1052
BmeRI	GACNNNNNGTC	1 cut(s)	1321
BmeT110I	CYCGRG	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	211, 810
BmrFI	CCNGG	1 cut(s)	1052
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	5 cut(s)	295, 973, 1092, 1139, 1174
BmuI	ACTGGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	711
BpmI	CTGGAG	2 cut(s)	887, 1063
BpuEI	CTTGAG	2 cut(s)	119, 1173
BsaI	GGTCTC	3 cut(s)	147, 418, 1239
BsaJI	CCNNGG	2 cut(s)	934, 1050
BsaWI	WCCGGW	3 cut(s)	296, 335, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	1236, 1266
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	261, 778
Bse21I	CCTNAGG	1 cut(s)	1149
Bse3DI	GCAATG	1 cut(s)	751
BseAI	TCCGGA	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	1052
BseDI	CCNNGG	2 cut(s)	934, 1050
BseGI	GGATG	4 cut(s)	180, 1130, 1199, 1307
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	751
BseMII	CTCAG	4 cut(s)	125, 157, 401, 1140
BseNI	ACTGG	2 cut(s)	261, 778
BseXI	GCAGC	6 cut(s)	36, 87, 142, 578, 700, 1177
BsgI	GTGCAG	3 cut(s)	94, 149, 305
Bsh1285I	CGRYCG	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	4 cut(s)	83, 297, 336, 354
BslFI	GGGAC	2 cut(s)	535, 970
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	3 cut(s)	147, 418, 1239
BsmFI	GGGAC	2 cut(s)	535, 970
BsmI	GAATGC	1 cut(s)	1206
Bso31I	GGTCTC	3 cut(s)	147, 418, 1239
BsoBI	CYCGRG	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp13I	TCCGGA	1 cut(s)	353
Bsp1407I	TGTACA	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	382, 801, 991, 1266
BspACI	CCGC	6 cut(s)	5, 23, 29, 484, 636, 777
BspCNI	CTCAG	4 cut(s)	126, 156, 400, 1141
BspEI	TCCGGA	1 cut(s)	353
BspLI	GGNNCC	2 cut(s)	211, 810
BspMAI	CTGCAG	2 cut(s)	54, 1180
BspMI	ACCTGC	1 cut(s)	1169
BspPI	GGATC	2 cut(s)	377, 986
BspT107I	GGYRCC	1 cut(s)	209
BspTNI	GGTCTC	3 cut(s)	147, 418, 1239
BsrDI	GCAATG	1 cut(s)	751
BsrGI	TGTACA	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	261, 778
BssECI	CCNNGG	2 cut(s)	934, 1050
BssMI	GATC	4 cut(s)	382, 801, 991, 1266
BssT1I	CCWWGG	1 cut(s)	934
Bst2UI	CCWGG	1 cut(s)	1052
Bst4CI	ACNGT	2 cut(s)	1237, 1319
Bst6I	CTCTTC	1 cut(s)	601
BstAPI	GCANNNNNTGC	3 cut(s)	974, 983, 1184
BstAUI	TGTACA	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	6 cut(s)	134, 143, 226, 387, 1142, 1149
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	4 cut(s)	180, 1130, 1199, 1307
BstKTI	GATC	4 cut(s)	385, 804, 994, 1269
BstMAI	GTCTC	3 cut(s)	147, 418, 1239
BstMBI	GATC	4 cut(s)	382, 801, 991, 1266
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 974, 983, 1127, 1184
BstNI	CCWGG	1 cut(s)	1052
BstSCI	CCNGG	1 cut(s)	1050
BstSFI	CTRYAG	2 cut(s)	50, 1176
BstV1I	GCAGC	6 cut(s)	36, 87, 142, 578, 700, 1177
BstV2I	GAAGAC	1 cut(s)	711
Bsu36I	CCTNAGG	1 cut(s)	1149
BtrI	CACGTC	1 cut(s)	627
BtsCI	GGATG	4 cut(s)	180, 1130, 1199, 1307
BtsIMutI	CAGTG	1 cut(s)	771
BveI	ACCTGC	1 cut(s)	1169
Cac8I	GCNNGC	1 cut(s)	634
CaiI	CAGNNNCTG	2 cut(s)	58, 569
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	2 cut(s)	167, 1135
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	6 cut(s)	134, 143, 226, 387, 1142, 1149
DpnI	GATC	4 cut(s)	384, 803, 993, 1268
DpnII	GATC	4 cut(s)	382, 801, 991, 1266
DraI	TTTAAA	1 cut(s)	760
DraIII	CACNNNGTG	1 cut(s)	127
DrdI	GACNNNNNNGTC	1 cut(s)	911
DriI	GACNNNNNGTC	1 cut(s)	1321
DseDI	GACNNNNNNGTC	1 cut(s)	911
Eam1104I	CTCTTC	1 cut(s)	601
Eam1105I	GACNNNNNGTC	1 cut(s)	1321
EarI	CTCTTC	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	934
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	3 cut(s)	147, 418, 1239
Eco57I	CTGAAG	1 cut(s)	582
Eco81I	CCTNAGG	1 cut(s)	1149
Eco88I	CYCGRG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	1171
EcoRII	CCWGG	1 cut(s)	1050
EcoT14I	CCWWGG	1 cut(s)	934
EcoT22I	ATGCAT	1 cut(s)	1132
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	934
FaeI	CATG	2 cut(s)	170, 1138
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	2 cut(s)	535, 970
FatI	CATG	2 cut(s)	166, 1134
FauI	CCCGC	2 cut(s)	629, 770
Fnu4HI	GCNGC	7 cut(s)	6, 50, 76, 131, 567, 689, 1166
FokI	GGATG	4 cut(s)	187, 1117, 1206, 1314
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	7 cut(s)	6, 50, 76, 131, 567, 689, 1166
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	7 cut(s)	6, 50, 76, 131, 567, 689, 1166
GsuI	CTGGAG	2 cut(s)	887, 1063
HapII	CCGG	4 cut(s)	83, 297, 336, 354
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	170, 1138
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HpaII	CCGG	4 cut(s)	83, 297, 336, 354
HphI	GGTGA	3 cut(s)	809, 1066, 1193
Hpy166II	GTNNAC	2 cut(s)	437, 1003
Hpy188III	TCNNGA	5 cut(s)	98, 354, 866, 1226, 1326
Hpy8I	GTNNAC	2 cut(s)	437, 1003
Hpy99I	CGWCG	2 cut(s)	118, 194
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	1237, 1319
HpyCH4IV	ACGT	3 cut(s)	126, 626, 1294
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 974, 983, 1127, 1184
HpyF3I	CTNAG	6 cut(s)	134, 143, 226, 387, 1142, 1149
HpySE526I	ACGT	3 cut(s)	126, 626, 1294
Hsp92II	CATG	2 cut(s)	170, 1138
Kpn2I	TCCGGA	1 cut(s)	353
Kzo9I	GATC	4 cut(s)	382, 801, 991, 1266
LmnI	GCTCC	2 cut(s)	375, 739
Lsp1109I	GCAGC	6 cut(s)	36, 87, 142, 578, 700, 1177
LweI	GCATC	5 cut(s)	295, 973, 1092, 1139, 1174
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	3 cut(s)	126, 626, 1294
MaeIII	GTNAC	4 cut(s)	1033, 1064, 1072, 1323
MalI	GATC	4 cut(s)	384, 803, 993, 1268
MboI	GATC	4 cut(s)	382, 801, 991, 1266
MboII	GAAGA	4 cut(s)	588, 711, 1038, 1067
MfeI	CAATTG	1 cut(s)	900
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	6 cut(s)	275, 325, 363, 900, 1008, 1171
MlyI	GAGTC	6 cut(s)	82, 88, 145, 168, 438, 1030
MmeI	TCCRAC	2 cut(s)	137, 422
Mph1103I	ATGCAT	1 cut(s)	1132
MroI	TCCGGA	1 cut(s)	353
MseI	TTAA	3 cut(s)	360, 759, 860
MspA1I	CMGCKG	3 cut(s)	133, 569, 715
MspI	CCGG	4 cut(s)	83, 297, 336, 354
MspR9I	CCNGG	1 cut(s)	1052
MunI	CAATTG	1 cut(s)	900
Mva1269I	GAATGC	1 cut(s)	1206
MvaI	CCWGG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	5 cut(s)	139, 974, 983, 1127, 1184
NdeII	GATC	4 cut(s)	382, 801, 991, 1266
NlaIII	CATG	2 cut(s)	170, 1138
NlaIV	GGNNCC	2 cut(s)	211, 810
NmuCI	GTSAC	3 cut(s)	1033, 1072, 1323
NsiI	ATGCAT	1 cut(s)	1132
PaqCI	CACCTGC	1 cut(s)	1169
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PctI	GAATGC	1 cut(s)	1206
PfeI	GAWTC	5 cut(s)	118, 458, 470, 681, 950
PflFI	GACNNNGTC	2 cut(s)	158, 1250
PkrI	GCNGC	7 cut(s)	7, 51, 77, 132, 568, 690, 1167
PleI	GAGTC	6 cut(s)	82, 88, 144, 167, 438, 1030
PpsI	GAGTC	6 cut(s)	82, 88, 144, 167, 438, 1030
PsiI	TTATAA	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	1050
PspGI	CCWGG	1 cut(s)	1050
PspN4I	GGNNCC	2 cut(s)	211, 810
PstI	CTGCAG	2 cut(s)	54, 1180
PstNI	CAGNNNCTG	2 cut(s)	58, 569
PsyI	GACNNNGTC	2 cut(s)	158, 1250
PvuII	CAGCTG	3 cut(s)	133, 569, 715
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SaqAI	TTAA	3 cut(s)	360, 759, 860
SatI	GCNGC	7 cut(s)	6, 50, 76, 131, 567, 689, 1166
Sau3AI	GATC	4 cut(s)	382, 801, 991, 1266
SchI	GAGTC	6 cut(s)	82, 88, 145, 168, 438, 1030
ScrFI	CCNGG	1 cut(s)	1052
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	5 cut(s)	295, 973, 1092, 1139, 1174
SfcI	CTRYAG	2 cut(s)	50, 1176
SmlI	CTYRAG	2 cut(s)	98, 1188
SmoI	CTYRAG	2 cut(s)	98, 1188
Sse9I	AATT	6 cut(s)	275, 325, 363, 900, 1008, 1171
SsiI	CCGC	6 cut(s)	5, 23, 29, 484, 636, 777
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	1050
StyI	CCWWGG	1 cut(s)	934
TaaI	ACNGT	2 cut(s)	1237, 1319
TaiI	ACGT	3 cut(s)	129, 629, 1297
TaqI	TCGA	3 cut(s)	192, 447, 666
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	6 cut(s)	275, 325, 363, 900, 1008, 1171
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	118, 458, 470, 681, 950
Tru1I	TTAA	3 cut(s)	360, 759, 860
Tru9I	TTAA	3 cut(s)	360, 759, 860
TscAI	CASTG	1 cut(s)	778
TseFI	GTSAC	3 cut(s)	1033, 1072, 1323
TseI	GCWGC	6 cut(s)	49, 75, 130, 566, 688, 1165
Tsp45I	GTSAC	3 cut(s)	1033, 1072, 1323
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	778
Tth111I	GACNNNGTC	2 cut(s)	158, 1250
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	3 cut(s)	275, 363, 1171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XspI	CTAG	1 cut(s)	462
Zsp2I	ATGCAT	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.