Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002560

Physical Location & Seq

Genomic Coordinates Reverse (-)

11409563 .. 11411691

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCTGTCATCTCTCAGTTGTCTTCGCAAGGAGTAGCACCAAGTGTCTTCTCCCACTGCTTGAGGGGAGACGATAGTGGTGGAGGTATATTGGTTATCGGCGAGATTGTGGAACCAAATATAGTCTATAGCCCGCTTGTCCCTTCACAGCCTCATTATAATTTGAATCTGCAGAGCATTTCTGTCAACGGACAGATATTGCCCATTGATACAGCAGTGTTCACAACATCAAGCAACCGAGGAACTATAGTTGATTCTGGTACAACTTTGGCATACCTTGCAGCCGAAGCCTATGACCCTTTTGTCAGTGCTATAACTGCTTCAGTTTCACAATCAGTGCGCCCTGTTGTTTCCAGCGCAAATCAATGTTATTTGATCACCTCCAGTGTCAGTGATATATTTCCTCAAGTTAGTTTTAACTTTGCTGGCGGTGCATCCTTGATTCTGAGACCGCAGGACTACCTTATACAGCAGACTTCTGTTAGTGGTGCTGCAAGGTGGTGCATTGGCCTCCAGAAGATTCGAGGTTCAGGGATAACGATTTTAGGAGACCTCGTGCTGAAAGACAAAATCGTGGTCTATGATTTGGGAGGTCAACGAATTGGATGGACTAACTATGACTGTTCAACAACAGTTAATGTTTCTGCAACAAGTAGAACCGGACAAAGTGAATATGTCAATGCAGGACAGCTAAGTGACAGCCGTTCTTTGCATAATGATCGCTACGAGCTGATTCCAGCATGCATGTTGGCTTTCCTTTCACTTATCATAACTATACAAGGAAACTCGTTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

266

Amino Acids

28.19

Weight (kDa)

5.03

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22850
fragaria_vesca	FvH4_3g30200 FvH4_3g30200 FvH4_3g30200 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560 FvH4_7g02560
malus_domestica	MD02G1291400.v1.1 MD03G1130700.v1.1 MD11G1152500.v1.1
prunus_persica	Prupe.2G031400_v2.0.a1 Prupe.6G115500_v2.0.a1 Prupe.6G115500_v2.0.a1
pyrus_communis	pycom02g24630 pycom02g24640 pycom11g12500
rosa_chinensis	RchiOBHm_Chr1g0321281 RchiOBHm_Chr5g0055981
rosa_laevigata	RLG00000030431 RLG00000035040
rosa_multiflora	Rmu_co8118894.1_g000001 Rmu_sc0029150.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433920 Rroxscaffold_1G00024290 Rroxscaffold_4G00327850
rosa_rugosa	Rorug01G0031900 Rorug05G0296800 Rorug05G0296900
rosa_samantha	Rh1AG044000 Rh1BG041700 Rh1CG046600 Rh1DG051200 Rh5AG367900 Rh5BG378300 Rh5CG401700 Rh5DG391400
rosa_wichuraiana	Rw0G006980 Rw1G003880 Rw5G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AasI	GACNNNNNNGTC	1 cut(s)	302
AciI	CCGC	3 cut(s)	134, 429, 452
AcuI	CTGAAG	1 cut(s)	306
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	166, 627
AluBI	AGCT	2 cut(s)	691, 730
AluI	AGCT	2 cut(s)	691, 730
Alw26I	GTCTC	3 cut(s)	63, 442, 543
AoxI	GGCC	1 cut(s)	508
ApeKI	GCWGC	2 cut(s)	281, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	561, 593
AspLEI	GCGC	2 cut(s)	342, 359
AsuHPI	GGTGA	1 cut(s)	370
BaeI	ACNNNNGTAYC	2 cut(s)	201, 234
BauI	CACGAG	1 cut(s)	554
BbsI	GAAGAC	2 cut(s)	15, 40
BbvI	GCAGC	2 cut(s)	293, 478
BccI	CCATC	1 cut(s)	600
BceAI	ACGGC	1 cut(s)	687
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BclI	TGATCA	1 cut(s)	375
BcoDI	GTCTC	3 cut(s)	63, 442, 543
BfmI	CTRYAG	3 cut(s)	127, 170, 246
BisI	GCNGC	2 cut(s)	282, 492
BlsI	GCNGC	2 cut(s)	283, 493
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	1 cut(s)	443
BpiI	GAAGAC	2 cut(s)	15, 40
BpmI	CTGGAG	2 cut(s)	367, 497
BpuEI	CTTGAG	2 cut(s)	82, 390
BsaI	GGTCTC	2 cut(s)	442, 543
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	659
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bse1I	ACTGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	434, 611
BseMII	CTCAG	2 cut(s)	29, 437
BseNI	ACTGG	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	293, 478
BshFI	GGCC	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	3 cut(s)	63, 442, 543
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	510
Bso31I	GGTCTC	2 cut(s)	442, 543
Bsp143I	GATC	2 cut(s)	375, 718
BspACI	CCGC	3 cut(s)	134, 429, 452
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	28, 438
BspLI	GGNNCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	174
BspTNI	GGTCTC	2 cut(s)	442, 543
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	2 cut(s)	375, 718
BssSI	CACGAG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	554
Bst4CI	ACNGT	2 cut(s)	623, 634
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	3 cut(s)	134, 427, 742
BstDEI	CTNAG	3 cut(s)	15, 446, 692
BstF5I	GGATG	2 cut(s)	434, 611
BstHHI	GCGC	2 cut(s)	342, 359
BstKTI	GATC	2 cut(s)	378, 721
BstMAI	GTCTC	3 cut(s)	63, 442, 543
BstMBI	GATC	2 cut(s)	375, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 287, 317, 431
BstNSI	RCATGY	2 cut(s)	744, 748
BstSFI	CTRYAG	3 cut(s)	127, 170, 246
BstV1I	GCAGC	2 cut(s)	293, 478
BstV2I	GAAGAC	2 cut(s)	15, 40
BsuRI	GGCC	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	434, 611
BtsI	GCAGTG	2 cut(s)	55, 222
BtsIMutI	CAGTG	6 cut(s)	55, 222, 313, 342, 391, 397
Cac8I	GCNNGC	3 cut(s)	134, 427, 742
CfoI	GCGC	2 cut(s)	342, 359
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	2 cut(s)	741, 745
CviJI	RGCY	9 cut(s)	132, 151, 284, 290, 510, 691, 702, 730, 752
CviKI_1	RGCY	9 cut(s)	132, 151, 284, 290, 510, 691, 702, 730, 752
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	3 cut(s)	15, 446, 692
DpnI	GATC	2 cut(s)	377, 720
DpnII	GATC	2 cut(s)	375, 718
DraIII	CACNNNGTG	1 cut(s)	44
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eco31I	GGTCTC	2 cut(s)	442, 543
Eco57I	CTGAAG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	746
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	744, 748
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	740, 744
FauI	CCCGC	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	282, 492
FokI	GGATG	2 cut(s)	421, 618
Fsp4HI	GCNGC	2 cut(s)	282, 492
GlaI	GCGC	2 cut(s)	341, 358
GluI	GCNGC	2 cut(s)	282, 492
GsuI	CTGGAG	2 cut(s)	367, 497
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	1 cut(s)	660
HhaI	GCGC	2 cut(s)	342, 359
Hin1II	CATG	2 cut(s)	744, 748
Hin6I	GCGC	2 cut(s)	340, 357
HinP1I	GCGC	2 cut(s)	340, 357
HincII	GTYRAC	2 cut(s)	187, 596
HindII	GTYRAC	2 cut(s)	187, 596
HinfI	GANTC	5 cut(s)	166, 254, 442, 520, 733
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	3 cut(s)	187, 222, 596
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	1 cut(s)	514
Hpy8I	GTNNAC	3 cut(s)	187, 222, 596
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	623, 634
HpyCH4V	TGCA	9 cut(s)	172, 281, 434, 494, 504, 647, 683, 712, 744
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 287, 317, 431
HpyF3I	CTNAG	3 cut(s)	15, 446, 692
Hsp92II	CATG	2 cut(s)	744, 748
HspAI	GCGC	2 cut(s)	340, 357
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	2 cut(s)	375, 718
Lsp1109I	GCAGC	2 cut(s)	293, 478
LweI	GCATC	1 cut(s)	443
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	2 cut(s)	377, 720
MboI	GATC	2 cut(s)	375, 718
MboII	GAAGA	3 cut(s)	15, 40, 529
MluCI	AATT	2 cut(s)	160, 600
Mph1103I	ATGCAT	1 cut(s)	746
MseI	TTAA	2 cut(s)	417, 636
MspI	CCGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	4 cut(s)	278, 287, 317, 431
NdeII	GATC	2 cut(s)	375, 718
NlaIII	CATG	2 cut(s)	744, 748
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	695
NsiI	ATGCAT	1 cut(s)	746
NspI	RCATGY	2 cut(s)	744, 748
PaeI	GCATGC	1 cut(s)	744
PfeI	GAWTC	5 cut(s)	166, 254, 442, 520, 733
PkrI	GCNGC	2 cut(s)	283, 493
PsiI	TTATAA	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	174
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	417, 636
SatI	GCNGC	2 cut(s)	282, 492
Sau3AI	GATC	2 cut(s)	375, 718
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	3 cut(s)	127, 170, 246
SmlI	CTYRAG	2 cut(s)	61, 405
SmoI	CTYRAG	2 cut(s)	61, 405
SphI	GCATGC	1 cut(s)	744
Sse9I	AATT	2 cut(s)	160, 600
SsiI	CCGC	3 cut(s)	134, 429, 452
TaaI	ACNGT	2 cut(s)	623, 634
TaqI	TCGA	1 cut(s)	523
TasI	AATT	2 cut(s)	160, 600
TfiI	GAWTC	5 cut(s)	166, 254, 442, 520, 733
Tru1I	TTAA	2 cut(s)	417, 636
Tru9I	TTAA	2 cut(s)	417, 636
TscAI	CASTG	6 cut(s)	62, 222, 313, 342, 391, 397
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	2 cut(s)	281, 491
Tsp45I	GTSAC	1 cut(s)	695
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	6 cut(s)	62, 222, 313, 342, 391, 397
XceI	RCATGY	2 cut(s)	744, 748
Zsp2I	ATGCAT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.