FvH4_7g05020

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004794
Physical Location & Seq
Reverse (-)
5444404 .. 5448483
4080 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05020.t2

Sequence Viewer

Length: 2016 bp
ATGATGCAGGAATTGTTAACCATTGATGACCTACCGGCGGCTAATGTGGAACTGGAACCAGAAAAGATTGACGGTGGAAAAAATGGAGGTCCTTCATTTCATTGTGATCTGTACGACACCGAATTAGTCCACAAGATAGCTCAAGGTTTCGTTCCTGGATTAGCTACGGCTTGTGTTGATAACACATCTGGTGATATCTTCAGGACCCCTGCTTCTGTGGCCGCCGAGGTGCGAAAGGAAATGGTGGAGTATATCACTCAAAGAAGCGAGAATTTTGTTGCAGAATCTGTTATTCTAGAAGGTGGCCAAGATGGACAAGTATCTGATCATCCCTATGACATCATTTCTGAATTTGTTGATGACTTTGCAAGTTCCAAGAGAAATTTGTTTAGTAGGGTATCAGGATGGTTGCTCAGTGAAAAGAGAGAAGACAATATAGATGATTTTGTTCAGGAGATGGAAATAAATGGGTTTTGGTTGGTTGATAAAAGAGAAACAATAGCACAGAGTTTGCTAAAGAATGTCGACCTTAAGAATGAGCATCACTGCAGTATGAAATTTCACACCCAAGAGGAGCTTGAAGTGCATGTCGCAAAGTGTAGCTATAGGTCTACGAGTTGCATAAACGAAGGATGTAATGCCATATTTTGTGCGAGACAGGTGGACAAGCATGATGCAGTTTGCCCCTTCAAGATAATTCCATGCGAACAAAACTGCAATGACATGATCATGAGACGTGACATGGACAGACATTGTATTACCGTCTGTCCAATGAAGCTTGTTAGTTGTCCTTTCTATGCGGTGGGTTGTCAATCCCCAGTACCACATTGTAAGCTTGAACAGCATCGTTCAGATGATCTCCATTCTCACATGCTGTTTGTATTACAAAGTATACATAAGGAGACATCTAGGGAAGGTCTGAAAAGAAGGCTGGAGCAACTAAAAGATGCATCTTCATCCAATAACTTGGCACAAGCTCGAGATGTGAGATCACTAACCTCTGCAGTCAAGGATCTTGAAGCAAAACTAGGACCGATGGAAATTAGCAGGAAACAACAAGAGAATCTTGATGTAGAACATGGGCCAGAGGAGGTAGGCAGCAAAGCTCCAGAGGTTGTGGAACCAGAGCCAAAAGAAGTGAACAATGAACCTGAGGAGGACCTTGTAATAAAACCAGCGTCAAAGGAAGTTAGCCAACAATCGGAGTATCTTGAAGCAAGATCAGAGCCAAAGGAAGTCGGTACAAAATCTGCGGACGATCTTGAAGCTAAACCAGCACAAGATGAACTGAGCACCAAACCTGTGAAAGATCTTGAAGCAAAACCGGCTGCAAATGAAGTCAGTAGCTCAAAACCCCCGGAAGATGTTGAAGCAAGGTCAGTGAGAGTGAGTAGGAAGGCCCTAACCGAACAAGAAGCTAAACAAGCAGCACAGGAACTGAGCACCAAACCTGCAGAAGATCTTGAAGCAAAACAAGCCCCACAGGACATTAGTAGTTCAAAACCCCATGAAGATGTTGAAGCAAAATCAGTGGGAGTGATTGGTCACGCTACAACAGGAAATGAAGATAAACCAGCAGCGAAGGAACTGAGCACCAAACCTACAGAAGATCTTGAAGCAAAATCAGCTCCAAAGGAAGTCAGTAAATTAAACCCCCTCGAAGATGTTGAAGCAAGGTCAGTGGGAGTGACTGGTCAGGCCCCAACAGGACAGGAAGATAAACCAGCACAAGAGGAACTGAGCACCAAACCTGTGAACAATCTTGAAGCAAAACCAGCTTTGAAGGAAGTGAGTAGCTCAAAAATCCCCGAAGATGTTGAAACAAGGTCAGTGGGAGAGAGTTGTCTGGCCCCCACAGGACATGAAGCTAAACCAGCACCAAAGGAACTTAGCACCAAACCTGCAGAAAATCTTGAAGCAAAACCAGCACCAAAGGAAATCAGTAGTCCAAAACCACCTGAAGATGTCAAAGAAAAGCCGGTGCGTGTGAGCGGTGAGGGCCAAAAAGGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

672

Amino Acids

73.81

Weight (kDa)

4.99

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 224 - 282 4.8e-11 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1459, 1909
AccBSI CCGCTC 1 cut(s) 1992
AccI GTMKAC 3 cut(s) 525, 611, 892
AciI CCGC 5 cut(s) 38, 222, 800, 1253, 1992
AclWI GGATC 1 cut(s) 1020
AcoI YGGCCR 2 cut(s) 219, 304
AcsI RAATTY 4 cut(s) 271, 350, 382, 557
AcuI CTGAAG 2 cut(s) 184, 1980
AfaI GTAC 3 cut(s) 113, 822, 1243
AfiI CCNNNNNNNGG 2 cut(s) 37, 1201
AflII CTTAAG 1 cut(s) 530
AjiI CACGTC 1 cut(s) 737
AjnI CCWGG 1 cut(s) 154
Alw21I GWGCWC 4 cut(s) 1295, 1445, 1595, 1745
Alw26I GTCTC 3 cut(s) 649, 727, 896
AlwI GGATC 1 cut(s) 1020
AlwNI CAGNNNCTG 2 cut(s) 287, 1438
Ama87I CYCGRG 1 cut(s) 978
AoxI GGCC 7 cut(s) 219, 304, 1082, 1398, 1698, 1848, 1999
ApeKI GCWGC 4 cut(s) 1098, 1328, 1427, 1577
ApoI RAATTY 4 cut(s) 271, 350, 382, 557
AspS9I GGNCC 9 cut(s) 89, 204, 1031, 1082, 1159, 1399, 1699, 1849, 1999
AsuC2I CCSGG 1 cut(s) 1358
AsuHPI GGTGA 2 cut(s) 203, 2006
AvaI CYCGRG 1 cut(s) 978
AvaII GGWCC 4 cut(s) 89, 204, 1031, 1159
AxyI CCTNAGG 1 cut(s) 1152
BalI TGGCCA 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 4 cut(s) 1295, 1445, 1595, 1745
BbvI GCAGC 4 cut(s) 1110, 1315, 1439, 1589
BccI CCATC 4 cut(s) 305, 399, 451, 1030
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 2 cut(s) 325, 726
BcnI CCSGG 1 cut(s) 1358
BcoDI GTCTC 3 cut(s) 649, 727, 896
BfaI CTAG 3 cut(s) 296, 909, 1028
BfmI CTRYAG 6 cut(s) 547, 604, 1002, 1452, 1602, 1902
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 2 cut(s) 1459, 1909
BglII AGATCT 3 cut(s) 1309, 1459, 1609
BisI GCNGC 6 cut(s) 39, 222, 1099, 1329, 1428, 1578
BlsI GCNGC 6 cut(s) 40, 223, 1100, 1330, 1429, 1579
Bme1390I CCNGG 2 cut(s) 156, 1358
Bme18I GGWCC 4 cut(s) 89, 204, 1031, 1159
BmeT110I CYCGRG 1 cut(s) 978
BmgBI CACGTC 1 cut(s) 737
BmgT120I GGNCC 9 cut(s) 89, 204, 1031, 1082, 1159, 1399, 1699, 1849, 1999
BmiI GGNNCC 5 cut(s) 57, 206, 1122, 1701, 1851
BmrFI CCNGG 2 cut(s) 156, 1358
BmrI ACTGGG 1 cut(s) 812
BmsI GCATC 5 cut(s) 550, 664, 853, 937, 959
BmuI ACTGGG 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 2 cut(s) 953, 1092
BpuEI CTTGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 1358
BsaJI CCNNGG 2 cut(s) 225, 1356
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 1201
Bse118I RCCGGY 3 cut(s) 34, 1324, 1978
Bse1I ACTGG 3 cut(s) 57, 818, 1696
Bse21I CCTNAGG 1 cut(s) 1152
Bse3DI GCAATG 1 cut(s) 724
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 225, 1356
BseGI GGATG 4 cut(s) 328, 410, 638, 956
BseLI CCNNNNNNNGG 2 cut(s) 37, 1201
BseMI GCAATG 1 cut(s) 724
BseMII CTCAG 6 cut(s) 427, 1143, 1280, 1430, 1580, 1730
BseNI ACTGG 3 cut(s) 57, 818, 1696
BseRI GAGGAG 3 cut(s) 587, 1103, 1169
BseXI GCAGC 4 cut(s) 1110, 1315, 1439, 1589
BshFI GGCC 7 cut(s) 221, 306, 1084, 1400, 1700, 1850, 2001
BsiHKAI GWGCWC 4 cut(s) 1295, 1445, 1595, 1745
BsiHKCI CYCGRG 1 cut(s) 978
BsiSI CCGG 4 cut(s) 35, 1325, 1358, 1979
BslI CCNNNNNNNGG 2 cut(s) 37, 1201
BsmAI GTCTC 3 cut(s) 649, 727, 896
BsmBI CGTCTC 1 cut(s) 727
BsnI GGCC 7 cut(s) 221, 306, 1084, 1400, 1700, 1850, 2001
BsoBI CYCGRG 1 cut(s) 978
Bsp1286I GDGCHC 4 cut(s) 1295, 1445, 1595, 1745
BspACI CCGC 5 cut(s) 38, 222, 800, 1253, 1992
BspANI GGCC 7 cut(s) 221, 306, 1084, 1400, 1700, 1850, 2001
BspCNI CTCAG 6 cut(s) 426, 1144, 1281, 1431, 1581, 1731
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 5 cut(s) 57, 206, 1122, 1701, 1851
BspMAI CTGCAG 4 cut(s) 551, 1006, 1456, 1906
BspMI ACCTGC 2 cut(s) 1459, 1909
BspPI GGATC 1 cut(s) 1020
BspTI CTTAAG 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 1992
BsrDI GCAATG 1 cut(s) 724
BsrFI RCCGGY 3 cut(s) 34, 1324, 1978
BsrI ACTGG 3 cut(s) 57, 818, 1696
BssAI RCCGGY 3 cut(s) 34, 1324, 1978
BssECI CCNNGG 2 cut(s) 225, 1356
BssNAI GTATAC 1 cut(s) 893
Bst1107I GTATAC 1 cut(s) 893
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 74, 763
BstAFI CTTAAG 1 cut(s) 530
BstDEI CTNAG 7 cut(s) 413, 1152, 1289, 1439, 1589, 1739, 1889
BstF5I GGATG 4 cut(s) 328, 410, 638, 956
BstMAI GTCTC 3 cut(s) 649, 727, 896
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 2 cut(s) 590, 874
BstSCI CCNGG 2 cut(s) 154, 1356
BstSFI CTRYAG 6 cut(s) 547, 604, 1002, 1452, 1602, 1902
BstV1I GCAGC 4 cut(s) 1110, 1315, 1439, 1589
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 4 cut(s) 1012, 1309, 1459, 1609
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 4 cut(s) 1012, 1309, 1459, 1609
BstZ17I GTATAC 1 cut(s) 893
Bsu36I CCTNAGG 1 cut(s) 1152
BsuRI GGCC 7 cut(s) 221, 306, 1084, 1400, 1700, 1850, 2001
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 4 cut(s) 328, 410, 638, 956
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 6 cut(s) 421, 544, 1386, 1536, 1686, 1836
BveI ACCTGC 2 cut(s) 1459, 1909
CaiI CAGNNNCTG 2 cut(s) 287, 1438
CciI TCATGA 1 cut(s) 729
Cfr10I RCCGGY 3 cut(s) 34, 1324, 1978
Cfr13I GGNCC 9 cut(s) 89, 204, 1031, 1082, 1159, 1399, 1699, 1849, 1999
CseI GACGC 1 cut(s) 1167
Csp6I GTAC 3 cut(s) 112, 821, 1242
CspCI CAANNNNNGTGG 6 cut(s) 1512, 1547, 1662, 1697, 1812, 1847
CviQI GTAC 3 cut(s) 112, 821, 1242
DdeI CTNAG 7 cut(s) 413, 1152, 1289, 1439, 1589, 1739, 1889
EaeI YGGCCR 2 cut(s) 219, 304
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 4 cut(s) 89, 204, 1031, 1159
Eco57I CTGAAG 2 cut(s) 184, 1980
Eco81I CCTNAGG 1 cut(s) 1152
Eco88I CYCGRG 1 cut(s) 978
EcoO109I RGGNCCY 5 cut(s) 89, 204, 1159, 1399, 1699
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 952
Esp3I CGTCTC 1 cut(s) 727
FalI AAGNNNNNCTT 4 cut(s) 561, 593, 1050, 1082
FbaI TGATCA 2 cut(s) 325, 726
FblI GTMKAC 3 cut(s) 525, 611, 892
Fnu4HI GCNGC 6 cut(s) 39, 222, 1099, 1329, 1428, 1578
FokI GGATG 4 cut(s) 315, 417, 645, 943
Fsp4HI GCNGC 6 cut(s) 39, 222, 1099, 1329, 1428, 1578
FspBI CTAG 3 cut(s) 296, 909, 1028
GluI GCNGC 6 cut(s) 39, 222, 1099, 1329, 1428, 1578
GsuI CTGGAG 2 cut(s) 953, 1092
HaeIII GGCC 7 cut(s) 221, 306, 1084, 1400, 1700, 1850, 2001
HapII CCGG 4 cut(s) 35, 1325, 1358, 1979
HgaI GACGC 1 cut(s) 1167
HincII GTYRAC 2 cut(s) 18, 526
HindII GTYRAC 2 cut(s) 18, 526
HindIII AAGCTT 2 cut(s) 776, 833
HinfI GANTC 2 cut(s) 284, 1063
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 4 cut(s) 35, 1325, 1358, 1979
HphI GGTGA 2 cut(s) 203, 2006
Hpy166II GTNNAC 8 cut(s) 18, 130, 526, 612, 664, 893, 1141, 1756
Hpy188I TCNGA 6 cut(s) 325, 349, 853, 921, 1204, 1225
Hpy8I GTNNAC 8 cut(s) 18, 130, 526, 612, 664, 893, 1141, 1756
HpyAV CCTTC 9 cut(s) 102, 293, 623, 697, 908, 921, 1390, 1576, 1777
HpyCH4III ACNGT 2 cut(s) 74, 763
HpyCH4IV ACGT 1 cut(s) 736
HpyF3I CTNAG 7 cut(s) 413, 1152, 1289, 1439, 1589, 1739, 1889
HpySE526I ACGT 1 cut(s) 736
Ksp22I TGATCA 2 cut(s) 325, 726
KspAI GTTAAC 1 cut(s) 18
LmnI GCTCC 4 cut(s) 574, 934, 1111, 1633
Lsp1109I GCAGC 4 cut(s) 1110, 1315, 1439, 1589
LweI GCATC 5 cut(s) 550, 664, 853, 937, 959
MaeI CTAG 3 cut(s) 296, 909, 1028
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 3 cut(s) 737, 1544, 1687
MbiI CCGCTC 1 cut(s) 1992
MflI RGATCY 4 cut(s) 1012, 1309, 1459, 1609
MhlI GDGCHC 4 cut(s) 1295, 1445, 1595, 1745
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 9 cut(s) 11, 122, 271, 350, 382, 557, 696, 1041, 1646
MluNI TGGCCA 1 cut(s) 306
Mox20I TGGCCA 1 cut(s) 306
Mph1103I ATGCAT 1 cut(s) 952
MscI TGGCCA 1 cut(s) 306
MseI TTAA 4 cut(s) 17, 531, 1649, 2014
MslI CAYNNNNRTG 3 cut(s) 333, 728, 1512
Msp20I TGGCCA 1 cut(s) 306
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 4 cut(s) 35, 1325, 1358, 1979
MspR9I CCNGG 2 cut(s) 156, 1358
MvaI CCWGG 1 cut(s) 156
NciI CCSGG 1 cut(s) 1358
NlaIV GGNNCC 5 cut(s) 57, 206, 1122, 1701, 1851
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 3 cut(s) 737, 1544, 1687
NsiI ATGCAT 1 cut(s) 952
NspI RCATGY 2 cut(s) 590, 874
PaeR7I CTCGAG 1 cut(s) 978
PagI TCATGA 1 cut(s) 729
PfeI GAWTC 2 cut(s) 284, 1063
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 6 cut(s) 40, 223, 1100, 1330, 1429, 1579
PpuMI RGGWCCY 3 cut(s) 89, 204, 1159
Psp5II RGGWCCY 3 cut(s) 89, 204, 1159
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 5 cut(s) 57, 206, 1122, 1701, 1851
PspPI GGNCC 9 cut(s) 89, 204, 1031, 1082, 1159, 1399, 1699, 1849, 1999
PspPPI RGGWCCY 3 cut(s) 89, 204, 1159
PstI CTGCAG 4 cut(s) 551, 1006, 1456, 1906
PstNI CAGNNNCTG 2 cut(s) 287, 1438
PsuI RGATCY 4 cut(s) 1012, 1309, 1459, 1609
RsaI GTAC 3 cut(s) 113, 822, 1243
RsaNI GTAC 3 cut(s) 112, 821, 1242
RseI CAYNNNNRTG 3 cut(s) 333, 728, 1512
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 4 cut(s) 17, 531, 1649, 2014
SatI GCNGC 6 cut(s) 39, 222, 1099, 1329, 1428, 1578
Sau96I GGNCC 9 cut(s) 89, 204, 1031, 1082, 1159, 1399, 1699, 1849, 1999
ScrFI CCNGG 2 cut(s) 156, 1358
SduI GDGCHC 4 cut(s) 1295, 1445, 1595, 1745
SfaNI GCATC 5 cut(s) 550, 664, 853, 937, 959
SfcI CTRYAG 6 cut(s) 547, 604, 1002, 1452, 1602, 1902
Sfr274I CTCGAG 1 cut(s) 978
SinI GGWCC 4 cut(s) 89, 204, 1031, 1159
SlaI CTCGAG 1 cut(s) 978
SmiMI CAYNNNNRTG 3 cut(s) 333, 728, 1512
SmlI CTYRAG 3 cut(s) 141, 530, 978
SmoI CTYRAG 3 cut(s) 141, 530, 978
Sse9I AATT 9 cut(s) 11, 122, 271, 350, 382, 557, 696, 1041, 1646
SsiI CCGC 5 cut(s) 38, 222, 800, 1253, 1992
SspMI CTAG 3 cut(s) 296, 909, 1028
StyD4I CCNGG 2 cut(s) 154, 1356
TaaI ACNGT 2 cut(s) 74, 763
TaiI ACGT 1 cut(s) 739
TaqI TCGA 3 cut(s) 525, 979, 1659
TaqII GACCGA 1 cut(s) 1048
TasI AATT 9 cut(s) 11, 122, 271, 350, 382, 557, 696, 1041, 1646
TauI GCSGC 2 cut(s) 41, 224
TfiI GAWTC 2 cut(s) 284, 1063
Tru1I TTAA 4 cut(s) 17, 531, 1649, 2014
Tru9I TTAA 4 cut(s) 17, 531, 1649, 2014
TscAI CASTG 6 cut(s) 421, 551, 1386, 1536, 1686, 1836
TseFI GTSAC 3 cut(s) 737, 1544, 1687
TseI GCWGC 4 cut(s) 1098, 1328, 1427, 1577
Tsp45I GTSAC 3 cut(s) 737, 1544, 1687
TspRI CASTG 6 cut(s) 421, 551, 1386, 1536, 1686, 1836
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 4 cut(s) 89, 204, 1031, 1159
XapI RAATTY 4 cut(s) 271, 350, 382, 557
XbaI TCTAGA 1 cut(s) 295
XceI RCATGY 2 cut(s) 590, 874
XhoI CTCGAG 1 cut(s) 978
XmiI GTMKAC 3 cut(s) 525, 611, 892
XspI CTAG 3 cut(s) 296, 909, 1028
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.