TRAF-type zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G11950 AT3G11950 AT3G11950 AT3G11950 AT3G11950 |
| fragaria_vesca | FvH4_7g05020 FvH4_7g05020 |
| malus_domestica | MD02G1263700.v1.1 MD07G1054500.v1.1 |
| prunus_persica | Prupe.2G061200_v2.0.a1 Prupe.2G061200_v2.0.a1 Prupe.2G061200_v2.0.a1 |
| pyrus_communis | pycom07g04230 |
| rosa_chinensis | RchiOBHm_Chr1g0331291 RchiOBHm_Chr1g0331341 |
| rosa_laevigata | RLG00000029742 |
| rosa_multiflora | Rmu_sc0005956.1_g000011 Rmu_sc0005956.1_g000015 Rmu_sc0011261.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00319230 |
| rosa_rugosa | Rorug01G0092700 |
| rosa_samantha | Rh1AG117200 Rh1AG117600 Rh1AG117700 Rh1BG088200 Rh1BG088400 Rh1CG112200 Rh1CG112500 Rh1DG121400 |
| rosa_wichuraiana | Rw1G009380 Rw1G009400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 5 cut(s) | 49, 1273, 2545, 2695, 3145 |
| Acc65I | GGTACC | 2 cut(s) | 826, 2050 |
| AccB1I | GGYRCC | 2 cut(s) | 826, 2050 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1085 |
| AccBSI | CCGCTC | 2 cut(s) | 2928, 3222 |
| AciI | CCGC | 4 cut(s) | 228, 2928, 3140, 3222 |
| AclWI | GGATC | 6 cut(s) | 1026, 1077, 2250, 2301, 2502, 2529 |
| AcoI | YGGCCR | 1 cut(s) | 225 |
| AcsI | RAATTY | 8 cut(s) | 277, 388, 514, 563, 1501, 1612, 1738, 1787 |
| AcuI | CTGAAG | 4 cut(s) | 2766, 2823, 2888, 3188 |
| AfaI | GTAC | 3 cut(s) | 828, 2052, 2479 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 307, 1085, 1213, 1531, 2437 |
| AflII | CTTAAG | 2 cut(s) | 536, 1760 |
| AjiI | CACGTC | 2 cut(s) | 743, 1967 |
| AjnI | CCWGG | 3 cut(s) | 160, 1384, 2314 |
| Alw21I | GWGCWC | 4 cut(s) | 2681, 2831, 2981, 3131 |
| Alw26I | GTCTC | 2 cut(s) | 733, 1957 |
| AlwI | GGATC | 6 cut(s) | 1026, 1077, 2250, 2301, 2502, 2529 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 293, 1517 |
| Ama87I | CYCGRG | 2 cut(s) | 984, 2208 |
| ApoI | RAATTY | 8 cut(s) | 277, 388, 514, 563, 1501, 1612, 1738, 1787 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1229, 1261, 2447, 2479 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1356 |
| Asp718I | GGTACC | 2 cut(s) | 826, 2050 |
| AspLEI | GCGC | 2 cut(s) | 592, 1816 |
| AsuC2I | CCSGG | 2 cut(s) | 824, 2048 |
| AsuHPI | GGTGA | 2 cut(s) | 209, 1433 |
| AvaI | CYCGRG | 2 cut(s) | 984, 2208 |
| AvaII | GGWCC | 2 cut(s) | 95, 1319 |
| AxyI | CCTNAGG | 2 cut(s) | 1164, 2388 |
| BanI | GGYRCC | 2 cut(s) | 826, 2050 |
| Bbv12I | GWGCWC | 4 cut(s) | 2681, 2831, 2981, 3131 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1247, 1281 |
| BciT130I | CCWGG | 3 cut(s) | 162, 1386, 2316 |
| BclI | TGATCA | 4 cut(s) | 331, 732, 1555, 1956 |
| BcnI | CCSGG | 2 cut(s) | 824, 2048 |
| BcoDI | GTCTC | 2 cut(s) | 733, 1957 |
| BfaI | CTAG | 7 cut(s) | 302, 1034, 1526, 2258, 3284, 3356, 3407 |
| BfmI | CTRYAG | 9 cut(s) | 610, 890, 1008, 1834, 2114, 2232, 2538, 2688, 2988 |
| BfrI | CTTAAG | 2 cut(s) | 536, 1760 |
| BfuAI | ACCTGC | 5 cut(s) | 49, 1273, 2545, 2695, 3145 |
| BglII | AGATCT | 5 cut(s) | 922, 2146, 2545, 2845, 3145 |
| BmcAI | AGTACT | 1 cut(s) | 2479 |
| Bme1390I | CCNGG | 5 cut(s) | 162, 824, 1386, 2048, 2316 |
| Bme18I | GGWCC | 2 cut(s) | 95, 1319 |
| BmeT110I | CYCGRG | 2 cut(s) | 984, 2208 |
| BmgBI | CACGTC | 2 cut(s) | 743, 1967 |
| BmiI | GGNNCC | 9 cut(s) | 63, 311, 828, 1287, 1535, 2052, 2787, 2937, 3087 |
| BmrFI | CCNGG | 5 cut(s) | 162, 824, 1386, 2048, 2316 |
| BpmI | CTGGAG | 5 cut(s) | 959, 1104, 2183, 2328, 3038 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1371 |
| BpuEI | CTTGAG | 3 cut(s) | 863, 2087, 3458 |
| BpuMI | CCSGG | 2 cut(s) | 824, 2048 |
| Bsa29I | ATCGAT | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 3 cut(s) | 822, 2046, 2315 |
| BsaWI | WCCGGW | 2 cut(s) | 64, 1288 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 307, 1085, 1213, 1531, 2437 |
| Bse1I | ACTGG | 6 cut(s) | 63, 1287, 2615, 2765, 3065, 3209 |
| Bse21I | CCTNAGG | 2 cut(s) | 1164, 2388 |
| BseBI | CCWGG | 3 cut(s) | 162, 1386, 2316 |
| BseCI | ATCGAT | 1 cut(s) | 30 |
| BseDI | CCNNGG | 3 cut(s) | 822, 2046, 2315 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 307, 1085, 1213, 1531, 2437 |
| BseNI | ACTGG | 6 cut(s) | 63, 1287, 2615, 2765, 3065, 3209 |
| BseRI | GAGGAG | 5 cut(s) | 593, 1181, 1817, 2405, 3302 |
| BshNI | GGYRCC | 2 cut(s) | 826, 2050 |
| BshVI | ATCGAT | 1 cut(s) | 30 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2681, 2831, 2981, 3131 |
| BsiHKCI | CYCGRG | 2 cut(s) | 984, 2208 |
| BsiSI | CCGG | 4 cut(s) | 65, 824, 1289, 2048 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 307, 1085, 1213, 1531, 2437 |
| BsmAI | GTCTC | 2 cut(s) | 733, 1957 |
| BsmBI | CGTCTC | 2 cut(s) | 733, 1957 |
| BsoBI | CYCGRG | 2 cut(s) | 984, 2208 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2681, 2831, 2981, 3131 |
| BspACI | CCGC | 4 cut(s) | 228, 2928, 3140, 3222 |
| BspDI | ATCGAT | 1 cut(s) | 30 |
| BspHI | TCATGA | 3 cut(s) | 735, 1959, 2296 |
| BspLI | GGNNCC | 9 cut(s) | 63, 311, 828, 1287, 1535, 2052, 2787, 2937, 3087 |
| BspMAI | CTGCAG | 4 cut(s) | 1012, 2236, 2542, 2692 |
| BspMI | ACCTGC | 5 cut(s) | 49, 1273, 2545, 2695, 3145 |
| BspPI | GGATC | 6 cut(s) | 1026, 1077, 2250, 2301, 2502, 2529 |
| BspT107I | GGYRCC | 2 cut(s) | 826, 2050 |
| BspTI | CTTAAG | 2 cut(s) | 536, 1760 |
| BsrBI | CCGCTC | 2 cut(s) | 2928, 3222 |
| BsrI | ACTGG | 6 cut(s) | 63, 1287, 2615, 2765, 3065, 3209 |
| BssECI | CCNNGG | 3 cut(s) | 822, 2046, 2315 |
| Bst2UI | CCWGG | 3 cut(s) | 162, 1386, 2316 |
| Bst4CI | ACNGT | 4 cut(s) | 110, 1212, 1334, 2917 |
| BstAFI | CTTAAG | 2 cut(s) | 536, 1760 |
| BstHHI | GCGC | 2 cut(s) | 592, 1816 |
| BstMAI | GTCTC | 2 cut(s) | 733, 1957 |
| BstNI | CCWGG | 3 cut(s) | 162, 1386, 2316 |
| BstNSI | RCATGY | 6 cut(s) | 180, 596, 880, 1404, 1820, 2104 |
| BstSCI | CCNGG | 5 cut(s) | 160, 822, 1384, 2046, 2314 |
| BstSFI | CTRYAG | 9 cut(s) | 610, 890, 1008, 1834, 2114, 2232, 2538, 2688, 2988 |
| Bsu15I | ATCGAT | 1 cut(s) | 30 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1164, 2388 |
| BsuTUI | ATCGAT | 1 cut(s) | 30 |
| BtrI | CACGTC | 2 cut(s) | 743, 1967 |
| BtsI | GCAGTG | 4 cut(s) | 550, 813, 1774, 2037 |
| BveI | ACCTGC | 5 cut(s) | 49, 1273, 2545, 2695, 3145 |
| CaiI | CAGNNNCTG | 2 cut(s) | 293, 1517 |
| CciI | TCATGA | 3 cut(s) | 735, 1959, 2296 |
| CfoI | GCGC | 2 cut(s) | 592, 1816 |
| ClaI | ATCGAT | 1 cut(s) | 30 |
| Csp6I | GTAC | 3 cut(s) | 827, 2051, 2478 |
| CviQI | GTAC | 3 cut(s) | 827, 2051, 2478 |
| EaeI | YGGCCR | 1 cut(s) | 225 |
| Eco32I | GATATC | 3 cut(s) | 144, 202, 1426 |
| Eco47I | GGWCC | 2 cut(s) | 95, 1319 |
| Eco57I | CTGAAG | 4 cut(s) | 2766, 2823, 2888, 3188 |
| Eco81I | CCTNAGG | 2 cut(s) | 1164, 2388 |
| Eco88I | CYCGRG | 2 cut(s) | 984, 2208 |
| EcoO109I | RGGNCCY | 6 cut(s) | 95, 1319, 2785, 2935, 3085, 3229 |
| EcoRII | CCWGG | 3 cut(s) | 160, 1384, 2314 |
| EcoRV | GATATC | 3 cut(s) | 144, 202, 1426 |
| EcoT22I | ATGCAT | 2 cut(s) | 958, 2182 |
| Esp3I | CGTCTC | 2 cut(s) | 733, 1957 |
| FbaI | TGATCA | 4 cut(s) | 331, 732, 1555, 1956 |
| FspBI | CTAG | 7 cut(s) | 302, 1034, 1526, 2258, 3284, 3356, 3407 |
| GlaI | GCGC | 2 cut(s) | 591, 1815 |
| GsuI | CTGGAG | 5 cut(s) | 959, 1104, 2183, 2328, 3038 |
| HapII | CCGG | 4 cut(s) | 65, 824, 1289, 2048 |
| HhaI | GCGC | 2 cut(s) | 592, 1816 |
| Hin6I | GCGC | 2 cut(s) | 590, 1814 |
| HinP1I | GCGC | 2 cut(s) | 590, 1814 |
| HincII | GTYRAC | 2 cut(s) | 24, 1248 |
| HindII | GTYRAC | 2 cut(s) | 24, 1248 |
| HindIII | AAGCTT | 4 cut(s) | 782, 839, 2006, 2063 |
| HinfI | GANTC | 7 cut(s) | 290, 1133, 1514, 2357, 2462, 3200, 3278 |
| HpaII | CCGG | 4 cut(s) | 65, 824, 1289, 2048 |
| HphI | GGTGA | 2 cut(s) | 209, 1433 |
| Hpy166II | GTNNAC | 6 cut(s) | 24, 113, 136, 1248, 1337, 2507 |
| Hpy8I | GTNNAC | 6 cut(s) | 24, 113, 136, 1248, 1337, 2507 |
| HpyCH4III | ACNGT | 4 cut(s) | 110, 1212, 1334, 2917 |
| HpyCH4IV | ACGT | 2 cut(s) | 742, 1966 |
| HpySE526I | ACGT | 2 cut(s) | 742, 1966 |
| HspAI | GCGC | 2 cut(s) | 590, 1814 |
| KpnI | GGTACC | 2 cut(s) | 830, 2054 |
| Ksp22I | TGATCA | 4 cut(s) | 331, 732, 1555, 1956 |
| LmnI | GCTCC | 7 cut(s) | 580, 728, 940, 1804, 1952, 2164, 2569 |
| MaeI | CTAG | 7 cut(s) | 302, 1034, 1526, 2258, 3284, 3356, 3407 |
| MaeII | ACGT | 2 cut(s) | 742, 1966 |
| MaeIII | GTNAC | 1 cut(s) | 3458 |
| MbiI | CCGCTC | 2 cut(s) | 2928, 3222 |
| MhlI | GDGCHC | 4 cut(s) | 2681, 2831, 2981, 3131 |
| MlyI | GAGTC | 1 cut(s) | 2471 |
| MmeI | TCCRAC | 3 cut(s) | 750, 1194, 1974 |
| Mph1103I | ATGCAT | 2 cut(s) | 958, 2182 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1356 |
| MseI | TTAA | 3 cut(s) | 537, 1761, 3455 |
| MslI | CAYNNNNRTG | 4 cut(s) | 339, 734, 1563, 1958 |
| MspCI | CTTAAG | 2 cut(s) | 536, 1760 |
| MspI | CCGG | 4 cut(s) | 65, 824, 1289, 2048 |
| MspR9I | CCNGG | 5 cut(s) | 162, 824, 1386, 2048, 2316 |
| MvaI | CCWGG | 3 cut(s) | 162, 1386, 2316 |
| NciI | CCSGG | 2 cut(s) | 824, 2048 |
| NlaIV | GGNNCC | 9 cut(s) | 63, 311, 828, 1287, 1535, 2052, 2787, 2937, 3087 |
| NmuCI | GTSAC | 1 cut(s) | 3458 |
| NsiI | ATGCAT | 2 cut(s) | 958, 2182 |
| NspI | RCATGY | 6 cut(s) | 180, 596, 880, 1404, 1820, 2104 |
| PaeR7I | CTCGAG | 2 cut(s) | 984, 2208 |
| PagI | TCATGA | 3 cut(s) | 735, 1959, 2296 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1356 |
| PfeI | GAWTC | 6 cut(s) | 290, 1133, 1514, 2357, 3200, 3278 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1085 |
| PfoI | TCCNGGA | 2 cut(s) | 160, 1384 |
| PleI | GAGTC | 1 cut(s) | 2470 |
| PpsI | GAGTC | 1 cut(s) | 2470 |
| PpuMI | RGGWCCY | 2 cut(s) | 95, 1319 |
| Psp5II | RGGWCCY | 2 cut(s) | 95, 1319 |
| Psp6I | CCWGG | 3 cut(s) | 160, 1384, 2314 |
| PspGI | CCWGG | 3 cut(s) | 160, 1384, 2314 |
| PspN4I | GGNNCC | 9 cut(s) | 63, 311, 828, 1287, 1535, 2052, 2787, 2937, 3087 |
| PspPPI | RGGWCCY | 2 cut(s) | 95, 1319 |
| PstI | CTGCAG | 4 cut(s) | 1012, 2236, 2542, 2692 |
| PstNI | CAGNNNCTG | 2 cut(s) | 293, 1517 |
| RsaI | GTAC | 3 cut(s) | 828, 2052, 2479 |
| RsaNI | GTAC | 3 cut(s) | 827, 2051, 2478 |
| RseI | CAYNNNNRTG | 4 cut(s) | 339, 734, 1563, 1958 |
| SaqAI | TTAA | 3 cut(s) | 537, 1761, 3455 |
| ScaI | AGTACT | 1 cut(s) | 2479 |
| SchI | GAGTC | 1 cut(s) | 2471 |
| ScrFI | CCNGG | 5 cut(s) | 162, 824, 1386, 2048, 2316 |
| SduI | GDGCHC | 4 cut(s) | 2681, 2831, 2981, 3131 |
| SfcI | CTRYAG | 9 cut(s) | 610, 890, 1008, 1834, 2114, 2232, 2538, 2688, 2988 |
| Sfr274I | CTCGAG | 2 cut(s) | 984, 2208 |
| SinI | GGWCC | 2 cut(s) | 95, 1319 |
| SlaI | CTCGAG | 2 cut(s) | 984, 2208 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 339, 734, 1563, 1958 |
| SmlI | CTYRAG | 7 cut(s) | 536, 842, 984, 1760, 2066, 2208, 3437 |
| SmoI | CTYRAG | 7 cut(s) | 536, 842, 984, 1760, 2066, 2208, 3437 |
| SsiI | CCGC | 4 cut(s) | 228, 2928, 3140, 3222 |
| SspI | AATATT | 1 cut(s) | 898 |
| SspMI | CTAG | 7 cut(s) | 302, 1034, 1526, 2258, 3284, 3356, 3407 |
| StyD4I | CCNGG | 5 cut(s) | 160, 822, 1384, 2046, 2314 |
| TaaI | ACNGT | 4 cut(s) | 110, 1212, 1334, 2917 |
| TaiI | ACGT | 2 cut(s) | 745, 1969 |
| TaqI | TCGA | 7 cut(s) | 30, 531, 985, 1755, 2209, 3294, 3447 |
| TatI | WGTACW | 1 cut(s) | 2477 |
| TauI | GCSGC | 1 cut(s) | 230 |
| TfiI | GAWTC | 6 cut(s) | 290, 1133, 1514, 2357, 3200, 3278 |
| Tru1I | TTAA | 3 cut(s) | 537, 1761, 3455 |
| Tru9I | TTAA | 3 cut(s) | 537, 1761, 3455 |
| TseFI | GTSAC | 1 cut(s) | 3458 |
| Tsp45I | GTSAC | 1 cut(s) | 3458 |
| TspGWI | ACGGA | 4 cut(s) | 140, 786, 1364, 2010 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1085 |
| Vha464I | CTTAAG | 2 cut(s) | 536, 1760 |
| VpaK11BI | GGWCC | 2 cut(s) | 95, 1319 |
| XapI | RAATTY | 8 cut(s) | 277, 388, 514, 563, 1501, 1612, 1738, 1787 |
| XceI | RCATGY | 6 cut(s) | 180, 596, 880, 1404, 1820, 2104 |
| XhoI | CTCGAG | 2 cut(s) | 984, 2208 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1356 |
| XspI | CTAG | 7 cut(s) | 302, 1034, 1526, 2258, 3284, 3356, 3407 |
| ZrmI | AGTACT | 1 cut(s) | 2479 |
| Zsp2I | ATGCAT | 2 cut(s) | 958, 2182 |