TRAF-type zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G11950 AT3G11950 AT3G11950 AT3G11950 AT3G11950 |
| fragaria_vesca | FvH4_7g05020 FvH4_7g05020 |
| malus_domestica | MD02G1263700.v1.1 MD07G1054500.v1.1 |
| prunus_persica | Prupe.2G061200_v2.0.a1 Prupe.2G061200_v2.0.a1 Prupe.2G061200_v2.0.a1 |
| pyrus_communis | pycom07g04230 |
| rosa_chinensis | RchiOBHm_Chr1g0331291 RchiOBHm_Chr1g0331341 |
| rosa_laevigata | RLG00000029742 |
| rosa_multiflora | Rmu_sc0005956.1_g000011 Rmu_sc0005956.1_g000015 Rmu_sc0011261.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00319230 |
| rosa_rugosa | Rorug01G0092700 |
| rosa_samantha | Rh1AG117200 Rh1AG117600 Rh1AG117700 Rh1BG088200 Rh1BG088400 Rh1CG112200 Rh1CG112500 Rh1DG121400 |
| rosa_wichuraiana | Rw1G009380 Rw1G009400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 43 |
| AccI | GTMKAC | 1 cut(s) | 525 |
| AccII | CGCG | 1 cut(s) | 738 |
| AciI | CCGC | 4 cut(s) | 281, 911, 1187, 1252 |
| AcsI | RAATTY | 2 cut(s) | 271, 1879 |
| AcuI | CTGAAG | 6 cut(s) | 184, 552, 1166, 1446, 1650, 1793 |
| AfaI | GTAC | 4 cut(s) | 251, 637, 724, 822 |
| AfeI | AGCGCT | 1 cut(s) | 576 |
| AflII | CTTAAG | 1 cut(s) | 515 |
| AjnI | CCWGG | 3 cut(s) | 154, 1078, 1742 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1011, 1043, 1521, 1553, 1623, 1655 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 196, 228, 1802, 1834 |
| AluBI | AGCT | 8 cut(s) | 140, 164, 170, 597, 778, 1435, 1639, 2030 |
| AluI | AGCT | 8 cut(s) | 140, 164, 170, 597, 778, 1435, 1639, 2030 |
| Alw26I | GTCTC | 2 cut(s) | 325, 727 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 221, 511, 1217 |
| Ama87I | CYCGRG | 2 cut(s) | 978, 1566 |
| Aor51HI | AGCGCT | 1 cut(s) | 576 |
| AoxI | GGCC | 6 cut(s) | 1133, 1235, 1337, 1796, 1847, 1949 |
| ApoI | RAATTY | 2 cut(s) | 271, 1879 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1373, 1405, 1628, 1660 |
| AspLEI | GCGC | 3 cut(s) | 577, 1492, 1696 |
| AspS9I | GGNCC | 8 cut(s) | 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949 |
| AsuHPI | GGTGA | 1 cut(s) | 203 |
| AsuII | TTCGAA | 1 cut(s) | 2009 |
| AvaI | CYCGRG | 2 cut(s) | 978, 1566 |
| AvaII | GGWCC | 3 cut(s) | 89, 1031, 1082 |
| AxyI | CCTNAGG | 1 cut(s) | 1323 |
| BamHI | GGATCC | 2 cut(s) | 1318, 1420 |
| BauI | CACGAG | 1 cut(s) | 1362 |
| BbsI | GAAGAC | 1 cut(s) | 78 |
| BccI | CCATC | 5 cut(s) | 77, 399, 451, 734, 736 |
| BceAI | ACGGC | 2 cut(s) | 1114, 1522 |
| BciT130I | CCWGG | 3 cut(s) | 156, 1080, 1744 |
| BclI | TGATCA | 1 cut(s) | 325 |
| BcoDI | GTCTC | 2 cut(s) | 325, 727 |
| BfaI | CTAG | 4 cut(s) | 1232, 1283, 1487, 1902 |
| BfmI | CTRYAG | 3 cut(s) | 165, 598, 1002 |
| BfoI | RGCGCY | 2 cut(s) | 578, 1493 |
| BfrI | CTTAAG | 1 cut(s) | 515 |
| BfuAI | ACCTGC | 1 cut(s) | 43 |
| Bme1390I | CCNGG | 3 cut(s) | 156, 1080, 1744 |
| Bme18I | GGWCC | 3 cut(s) | 89, 1031, 1082 |
| BmeT110I | CYCGRG | 2 cut(s) | 978, 1566 |
| BmgT120I | GGNCC | 8 cut(s) | 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949 |
| BmiI | GGNNCC | 4 cut(s) | 1320, 1422, 1449, 1950 |
| BmrFI | CCNGG | 3 cut(s) | 156, 1080, 1744 |
| BmrI | ACTGGG | 1 cut(s) | 1955 |
| BmsI | GCATC | 4 cut(s) | 301, 914, 959, 964 |
| BmuI | ACTGGG | 1 cut(s) | 1955 |
| BpiI | GAAGAC | 1 cut(s) | 78 |
| BpmI | CTGGAG | 1 cut(s) | 703 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1436 |
| Bpu14I | TTCGAA | 1 cut(s) | 2009 |
| BpuEI | CTTGAG | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 4 cut(s) | 154, 1161, 1314, 1588 |
| BsaWI | WCCGGW | 1 cut(s) | 58 |
| Bse1I | ACTGG | 3 cut(s) | 720, 960, 1950 |
| Bse21I | CCTNAGG | 1 cut(s) | 1323 |
| BseBI | CCWGG | 3 cut(s) | 156, 1080, 1744 |
| BseDI | CCNNGG | 4 cut(s) | 154, 1161, 1314, 1588 |
| BseMII | CTCAG | 7 cut(s) | 244, 272, 1314, 1348, 1428, 1458, 1646 |
| BseNI | ACTGG | 3 cut(s) | 720, 960, 1950 |
| Bsh1236I | CGCG | 1 cut(s) | 738 |
| BshFI | GGCC | 6 cut(s) | 1135, 1237, 1339, 1798, 1849, 1951 |
| BsiHKCI | CYCGRG | 2 cut(s) | 978, 1566 |
| BsiSI | CCGG | 1 cut(s) | 59 |
| BslFI | GGGAC | 2 cut(s) | 319, 1555 |
| BsmAI | GTCTC | 2 cut(s) | 325, 727 |
| BsmBI | CGTCTC | 1 cut(s) | 727 |
| BsmFI | GGGAC | 2 cut(s) | 319, 1555 |
| BsnI | GGCC | 6 cut(s) | 1135, 1237, 1339, 1798, 1849, 1951 |
| BsoBI | CYCGRG | 2 cut(s) | 978, 1566 |
| Bsp119I | TTCGAA | 1 cut(s) | 2009 |
| BspACI | CCGC | 4 cut(s) | 281, 911, 1187, 1252 |
| BspANI | GGCC | 6 cut(s) | 1135, 1237, 1339, 1798, 1849, 1951 |
| BspCNI | CTCAG | 7 cut(s) | 243, 271, 1315, 1347, 1427, 1459, 1647 |
| BspFNI | CGCG | 1 cut(s) | 738 |
| BspHI | TCATGA | 2 cut(s) | 729, 1525 |
| BspLI | GGNNCC | 4 cut(s) | 1320, 1422, 1449, 1950 |
| BspMAI | CTGCAG | 2 cut(s) | 602, 1006 |
| BspMI | ACCTGC | 1 cut(s) | 43 |
| BspT104I | TTCGAA | 1 cut(s) | 2009 |
| BspTI | CTTAAG | 1 cut(s) | 515 |
| BsrI | ACTGG | 3 cut(s) | 720, 960, 1950 |
| BssECI | CCNNGG | 4 cut(s) | 154, 1161, 1314, 1588 |
| BssSI | CACGAG | 1 cut(s) | 1362 |
| BssT1I | CCWWGG | 2 cut(s) | 1314, 1588 |
| Bst2BI | CACGAG | 1 cut(s) | 1362 |
| Bst2UI | CCWGG | 3 cut(s) | 156, 1080, 1744 |
| Bst4CI | ACNGT | 3 cut(s) | 763, 830, 1577 |
| Bst6I | CTCTTC | 3 cut(s) | 571, 1014, 1980 |
| BstAFI | CTTAAG | 1 cut(s) | 515 |
| BstBI | TTCGAA | 1 cut(s) | 2009 |
| BstC8I | GCNNGC | 4 cut(s) | 579, 588, 1052, 1861 |
| BstDEI | CTNAG | 9 cut(s) | 230, 258, 413, 1323, 1334, 1414, 1436, 1467, 1655 |
| BstFNI | CGCG | 1 cut(s) | 738 |
| BstH2I | RGCGCY | 2 cut(s) | 578, 1493 |
| BstHHI | GCGC | 3 cut(s) | 577, 1492, 1696 |
| BstMAI | GTCTC | 2 cut(s) | 325, 727 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 583, 587 |
| BstNI | CCWGG | 3 cut(s) | 156, 1080, 1744 |
| BstNSI | RCATGY | 1 cut(s) | 590 |
| BstSCI | CCNGG | 3 cut(s) | 154, 1078, 1742 |
| BstSFI | CTRYAG | 3 cut(s) | 165, 598, 1002 |
| BstUI | CGCG | 1 cut(s) | 738 |
| BstV2I | GAAGAC | 1 cut(s) | 78 |
| BstX2I | RGATCY | 6 cut(s) | 916, 1165, 1318, 1369, 1420, 1930 |
| BstYI | RGATCY | 6 cut(s) | 916, 1165, 1318, 1369, 1420, 1930 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1323 |
| BsuRI | GGCC | 6 cut(s) | 1135, 1237, 1339, 1798, 1849, 1951 |
| BtsI | GCAGTG | 2 cut(s) | 544, 807 |
| BtsIMutI | CAGTG | 4 cut(s) | 222, 544, 807, 826 |
| BveI | ACCTGC | 1 cut(s) | 43 |
| Cac8I | GCNNGC | 4 cut(s) | 579, 588, 1052, 1861 |
| CaiI | CAGNNNCTG | 3 cut(s) | 221, 511, 1217 |
| CciI | TCATGA | 2 cut(s) | 729, 1525 |
| CfoI | GCGC | 3 cut(s) | 577, 1492, 1696 |
| Cfr13I | GGNCC | 8 cut(s) | 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949 |
| CseI | GACGC | 1 cut(s) | 744 |
| Csp6I | GTAC | 4 cut(s) | 250, 636, 723, 821 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 27, 62, 1482, 1517, 1686, 1721, 1737, 1772 |
| CviAII | CATG | 7 cut(s) | 553, 587, 661, 671, 702, 730, 1526 |
| CviQI | GTAC | 4 cut(s) | 250, 636, 723, 821 |
| DdeI | CTNAG | 9 cut(s) | 230, 258, 413, 1323, 1334, 1414, 1436, 1467, 1655 |
| Eam1104I | CTCTTC | 3 cut(s) | 571, 1014, 1980 |
| EarI | CTCTTC | 3 cut(s) | 571, 1014, 1980 |
| Eco130I | CCWWGG | 2 cut(s) | 1314, 1588 |
| Eco32I | GATATC | 1 cut(s) | 196 |
| Eco47I | GGWCC | 3 cut(s) | 89, 1031, 1082 |
| Eco47III | AGCGCT | 1 cut(s) | 576 |
| Eco57I | CTGAAG | 6 cut(s) | 184, 552, 1166, 1446, 1650, 1793 |
| Eco81I | CCTNAGG | 1 cut(s) | 1323 |
| Eco88I | CYCGRG | 2 cut(s) | 978, 1566 |
| EcoO109I | RGGNCCY | 1 cut(s) | 89 |
| EcoRII | CCWGG | 3 cut(s) | 154, 1078, 1742 |
| EcoRV | GATATC | 1 cut(s) | 196 |
| EcoT14I | CCWWGG | 2 cut(s) | 1314, 1588 |
| ErhI | CCWWGG | 2 cut(s) | 1314, 1588 |
| Esp3I | CGTCTC | 1 cut(s) | 727 |
| FaeI | CATG | 7 cut(s) | 556, 590, 664, 674, 705, 733, 1529 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1011, 1043, 1164, 1196, 1419, 1451, 1623, 1655 |
| FaqI | GGGAC | 2 cut(s) | 319, 1555 |
| FatI | CATG | 7 cut(s) | 552, 586, 660, 670, 701, 729, 1525 |
| FbaI | TGATCA | 1 cut(s) | 325 |
| FblI | GTMKAC | 1 cut(s) | 525 |
| FspBI | CTAG | 4 cut(s) | 1232, 1283, 1487, 1902 |
| GlaI | GCGC | 3 cut(s) | 576, 1491, 1695 |
| GsuI | CTGGAG | 1 cut(s) | 703 |
| HaeII | RGCGCY | 2 cut(s) | 578, 1493 |
| HaeIII | GGCC | 6 cut(s) | 1135, 1237, 1339, 1798, 1849, 1951 |
| HapII | CCGG | 1 cut(s) | 59 |
| HgaI | GACGC | 1 cut(s) | 744 |
| HhaI | GCGC | 3 cut(s) | 577, 1492, 1696 |
| Hin1II | CATG | 7 cut(s) | 556, 590, 664, 674, 705, 733, 1529 |
| Hin6I | GCGC | 3 cut(s) | 575, 1490, 1694 |
| HinP1I | GCGC | 3 cut(s) | 575, 1490, 1694 |
| HincII | GTYRAC | 4 cut(s) | 18, 178, 526, 996 |
| HindII | GTYRAC | 4 cut(s) | 18, 178, 526, 996 |
| HindIII | AAGCTT | 3 cut(s) | 776, 1433, 1637 |
| HinfI | GANTC | 7 cut(s) | 284, 508, 674, 1624, 1766, 1817, 1871 |
| HpaI | GTTAAC | 1 cut(s) | 996 |
| HpaII | CCGG | 1 cut(s) | 59 |
| HphI | GGTGA | 1 cut(s) | 203 |
| Hpy188I | TCNGA | 6 cut(s) | 233, 261, 325, 349, 571, 1417 |
| HpyAV | CCTTC | 7 cut(s) | 73, 102, 623, 873, 1666, 1768, 1819 |
| HpyCH4III | ACNGT | 3 cut(s) | 763, 830, 1577 |
| HpyCH4IV | ACGT | 1 cut(s) | 1792 |
| HpyCH4V | TGCA | 9 cut(s) | 38, 314, 368, 549, 600, 621, 653, 800, 1004 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 583, 587 |
| HpyF3I | CTNAG | 9 cut(s) | 230, 258, 413, 1323, 1334, 1414, 1436, 1467, 1655 |
| HpySE526I | ACGT | 1 cut(s) | 1792 |
| Hsp92II | CATG | 7 cut(s) | 556, 590, 664, 674, 705, 733, 1529 |
| HspAI | GCGC | 3 cut(s) | 575, 1490, 1694 |
| Ksp22I | TGATCA | 1 cut(s) | 325 |
| KspAI | GTTAAC | 1 cut(s) | 996 |
| LmnI | GCTCC | 2 cut(s) | 722, 934 |
| LweI | GCATC | 4 cut(s) | 301, 914, 959, 964 |
| MaeI | CTAG | 4 cut(s) | 1232, 1283, 1487, 1902 |
| MaeII | ACGT | 1 cut(s) | 1792 |
| MaeIII | GTNAC | 4 cut(s) | 397, 656, 1144, 1894 |
| MboII | GAAGA | 8 cut(s) | 83, 190, 440, 558, 875, 945, 1031, 1997 |
| MflI | RGATCY | 6 cut(s) | 916, 1165, 1318, 1369, 1420, 1930 |
| MlyI | GAGTC | 3 cut(s) | 293, 502, 1865 |
| MseI | TTAA | 3 cut(s) | 516, 561, 995 |
| MslI | CAYNNNNRTG | 1 cut(s) | 333 |
| MspCI | CTTAAG | 1 cut(s) | 515 |
| MspI | CCGG | 1 cut(s) | 59 |
| MspR9I | CCNGG | 3 cut(s) | 156, 1080, 1744 |
| MvaI | CCWGG | 3 cut(s) | 156, 1080, 1744 |
| MvnI | CGCG | 1 cut(s) | 738 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 583, 587 |
| NlaIII | CATG | 7 cut(s) | 556, 590, 664, 674, 705, 733, 1529 |
| NlaIV | GGNNCC | 4 cut(s) | 1320, 1422, 1449, 1950 |
| NmeAIII | GCCGAG | 1 cut(s) | 607 |
| NmuCI | GTSAC | 2 cut(s) | 656, 1144 |
| NspI | RCATGY | 1 cut(s) | 590 |
| NspV | TTCGAA | 1 cut(s) | 2009 |
| PaeI | GCATGC | 1 cut(s) | 590 |
| PaeR7I | CTCGAG | 1 cut(s) | 978 |
| PagI | TCATGA | 2 cut(s) | 729, 1525 |
| PfeI | GAWTC | 4 cut(s) | 674, 1624, 1766, 1817 |
| PleI | GAGTC | 3 cut(s) | 292, 502, 1865 |
| PpsI | GAGTC | 3 cut(s) | 292, 502, 1865 |
| PpuMI | RGGWCCY | 1 cut(s) | 89 |
| Psp5II | RGGWCCY | 1 cut(s) | 89 |
| Psp6I | CCWGG | 3 cut(s) | 154, 1078, 1742 |
| PspGI | CCWGG | 3 cut(s) | 154, 1078, 1742 |
| PspN4I | GGNNCC | 4 cut(s) | 1320, 1422, 1449, 1950 |
| PspPI | GGNCC | 8 cut(s) | 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949 |
| PspPPI | RGGWCCY | 1 cut(s) | 89 |
| PstI | CTGCAG | 2 cut(s) | 602, 1006 |
| PstNI | CAGNNNCTG | 3 cut(s) | 221, 511, 1217 |
| PsuI | RGATCY | 6 cut(s) | 916, 1165, 1318, 1369, 1420, 1930 |
| RsaI | GTAC | 4 cut(s) | 251, 637, 724, 822 |
| RsaNI | GTAC | 4 cut(s) | 250, 636, 723, 821 |
| RseI | CAYNNNNRTG | 1 cut(s) | 333 |
| SalI | GTCGAC | 1 cut(s) | 524 |
| SaqAI | TTAA | 3 cut(s) | 516, 561, 995 |
| Sau96I | GGNCC | 8 cut(s) | 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949 |
| SchI | GAGTC | 3 cut(s) | 293, 502, 1865 |
| ScrFI | CCNGG | 3 cut(s) | 156, 1080, 1744 |
| SfaNI | GCATC | 4 cut(s) | 301, 914, 959, 964 |
| SfcI | CTRYAG | 3 cut(s) | 165, 598, 1002 |
| Sfr274I | CTCGAG | 1 cut(s) | 978 |
| SfuI | TTCGAA | 1 cut(s) | 2009 |
| SinI | GGWCC | 3 cut(s) | 89, 1031, 1082 |
| SlaI | CTCGAG | 1 cut(s) | 978 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 333 |
| SmlI | CTYRAG | 3 cut(s) | 141, 515, 978 |
| SmoI | CTYRAG | 3 cut(s) | 141, 515, 978 |
| SphI | GCATGC | 1 cut(s) | 590 |
| SsiI | CCGC | 4 cut(s) | 281, 911, 1187, 1252 |
| SspMI | CTAG | 4 cut(s) | 1232, 1283, 1487, 1902 |
| StyD4I | CCNGG | 3 cut(s) | 154, 1078, 1742 |
| StyI | CCWWGG | 2 cut(s) | 1314, 1588 |
| TaaI | ACNGT | 3 cut(s) | 763, 830, 1577 |
| TaiI | ACGT | 1 cut(s) | 1795 |
| TaqI | TCGA | 3 cut(s) | 525, 979, 2009 |
| TatI | WGTACW | 2 cut(s) | 249, 635 |
| TauI | GCSGC | 2 cut(s) | 1189, 1254 |
| TfiI | GAWTC | 4 cut(s) | 674, 1624, 1766, 1817 |
| Tru1I | TTAA | 3 cut(s) | 516, 561, 995 |
| Tru9I | TTAA | 3 cut(s) | 516, 561, 995 |
| TscAI | CASTG | 4 cut(s) | 222, 551, 807, 833 |
| TseFI | GTSAC | 2 cut(s) | 656, 1144 |
| Tsp45I | GTSAC | 2 cut(s) | 656, 1144 |
| TspGWI | ACGGA | 2 cut(s) | 321, 1154 |
| TspRI | CASTG | 4 cut(s) | 222, 551, 807, 833 |
| Vha464I | CTTAAG | 1 cut(s) | 515 |
| VpaK11BI | GGWCC | 3 cut(s) | 89, 1031, 1082 |
| XapI | RAATTY | 2 cut(s) | 271, 1879 |
| XceI | RCATGY | 1 cut(s) | 590 |
| XhoI | CTCGAG | 1 cut(s) | 978 |
| XmiI | GTMKAC | 1 cut(s) | 525 |
| XspI | CTAG | 4 cut(s) | 1232, 1283, 1487, 1902 |