pycom07g04230

TRAF-type zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
3662505 .. 3664808
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04230.2

Sequence Viewer

Length: 2040 bp
ATGTCAAGAGAATTGTCAACCATTGATGATCTACCTGCAAGTAATGTGGAACTCAAACCGGAAAAGATTGAAGACGGGAAGGATGGAGGTCCTTCGTTTCATTGTGATCTTTACGACACAGAATTAGTTTACAAGATAGCTCAAGTGTTCATCCCTGGATTAGCTACAGCTTGTGTTGACAACACATCTGGTGATATCTTCAGGACTGCTGGTTCAGTGGCTGCTGATCTCAGAAAGGAAATGGTGGAGTACATTACTCAGAGAAGCGAAAATTTTGTAGCGGAGTCTGTTATCTTGGAGGGTGGGACTGATGCACAAGTCTCTGATCATCCGTATGACATCATTTCTGATTTTGTTGATGACTTTGCAAGTTCCAAGAGAAATCTGTTTAGTCGGGTTACAGGATGGCTGCTAAGTGAAAAAAGAGAAGATAACATAGATGATTTCGTTCAAGAGATGGAAATAAACGGGTTTTGGTTGATTGATAAAAGAGAAGCAATAGCACAGACTCTGCTTAAGAATGTCGACTTCAAGAATGAACATCACTGCAACATGAAGTTTAACTCTTCAGAAGCGCTTGCCGAGCATGCTTCAAGCTGCAGTTTTAGGTCTATGACTTGCACAAATGAAGGTTGTACTATTGTATTTTGTGCAAGTCACATGGAGAAACATGATTCAATTTGCCCGTTCAAGATAATTCCATGTGAACAAAACTGCTCCAGTACCATCATGAGACGCGAGATGGACAGACATTGTATTACTGTCTGTCCAATGAAGCTTGTTAGTTGTCCTTTCTATGCAGTGGGTTGTCAATCTCCTGTACCACACTGTAAAGTTGAGCAACATCGTTTGGATGATCTCCCTTCTCACTTGCTTTTCATTCTTCAAACTATCCACAAGGAAGCATCTGCGGAGGATCTAAAGAAACGGGTGGAGCAAGTAGAAAAGGCATCTTCATCCAGTCAATTAGCAGATGCTCGAGATGTGAGATCGTTAACATCTGCAGTCAAGGGTATTGAAGAGAAACTTGGTCCAATGGAAGTGAGCAGCACGCACCCAGAGGATGTTGAAGCAAAACCAGGACCAGCAGAATTGAACGGCAAACATCCAGAGGATGTTGAAGCAAAATTAGGGCCAACGGAAGTGACCAGCAAACCCACCGAGGATCTTGAAGCAAAACTTCAGCCGCAGGAAGTGAACAAAAGAACCCCAGAGGCTGTTGAAACAAAACTAGGGCCAAAGGAAGTAAGCCGCAAACCCCCAGAGGATCGTGAAACTAAACTAGGTTCAAAAGAAACGAGCAGCAAAACCTCCAAGGATCCTGAGGCAAATCTCAGGCCAAATGAAGTGAGCAGCCAACCACGAGAGGATCTTGAAACAAATCAAGGGTCAAAGGAAGTGAGCAGAAAAACCTCAGAGGATCCTGAAGCAAAGCTTAGGACAAAGGAACCGAGCAGAAAATCCCCTGAGAATGTTGAAAAAAAACTAGCGCCAAAGGAAGTGGACGGCAAACCCCCAGAGGATCATGAAGCAAAAATTGGGACAAATGAAGTGAGCAGCCAACCCCGAGAGGACTGTGAAACAAGCCAAGGGTCAAAGGAAGTGAGCAGCAAACCCCCAGAGAATCCTGAAGCAAAGCTTGGGTCAAAGGAACTGAGCAGAAAATCCCCGAAGGATGTTGAAAAAAAACTTGCGCCAAAGGAAGTGGACAGCACACCACCAGAGGATCACGAACCAAAAACCAGGACAAAGGATGTGGACAATGAATCCCTGAAGGATATTGAAGTAAAACGTGGGCCAAAGGAAGTGAACAACGAATCCCCGAAGGATATTGAAGCAAAAGTAGGGCCAAAGGAAGCGAGCAGCAAAGACTCAAAGAATTTTGAAGCAAAAGTAACTCCTAGTGAAAGCAGCAGCAAACCCCCAGAGGATCTTGAAGCAAAACTGGGGCCAACAGAAGTGAGCGACAAACACAAGGATAGTGAAGAGAGTAGGGAAACCTCAACTTCGAAAAATGTCTTTGAGGAAGCTGAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

680

Amino Acids

75.38

Weight (kDa)

5.07

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 525
AccII CGCG 1 cut(s) 738
AciI CCGC 4 cut(s) 281, 911, 1187, 1252
AcsI RAATTY 2 cut(s) 271, 1879
AcuI CTGAAG 6 cut(s) 184, 552, 1166, 1446, 1650, 1793
AfaI GTAC 4 cut(s) 251, 637, 724, 822
AfeI AGCGCT 1 cut(s) 576
AflII CTTAAG 1 cut(s) 515
AjnI CCWGG 3 cut(s) 154, 1078, 1742
AjuI GAANNNNNNNTTGG 6 cut(s) 1011, 1043, 1521, 1553, 1623, 1655
AloI GAACNNNNNNTCC 4 cut(s) 196, 228, 1802, 1834
AluBI AGCT 8 cut(s) 140, 164, 170, 597, 778, 1435, 1639, 2030
AluI AGCT 8 cut(s) 140, 164, 170, 597, 778, 1435, 1639, 2030
Alw26I GTCTC 2 cut(s) 325, 727
AlwNI CAGNNNCTG 3 cut(s) 221, 511, 1217
Ama87I CYCGRG 2 cut(s) 978, 1566
Aor51HI AGCGCT 1 cut(s) 576
AoxI GGCC 6 cut(s) 1133, 1235, 1337, 1796, 1847, 1949
ApoI RAATTY 2 cut(s) 271, 1879
ArsI GACNNNNNNTTYG 4 cut(s) 1373, 1405, 1628, 1660
AspLEI GCGC 3 cut(s) 577, 1492, 1696
AspS9I GGNCC 8 cut(s) 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949
AsuHPI GGTGA 1 cut(s) 203
AsuII TTCGAA 1 cut(s) 2009
AvaI CYCGRG 2 cut(s) 978, 1566
AvaII GGWCC 3 cut(s) 89, 1031, 1082
AxyI CCTNAGG 1 cut(s) 1323
BamHI GGATCC 2 cut(s) 1318, 1420
BauI CACGAG 1 cut(s) 1362
BbsI GAAGAC 1 cut(s) 78
BccI CCATC 5 cut(s) 77, 399, 451, 734, 736
BceAI ACGGC 2 cut(s) 1114, 1522
BciT130I CCWGG 3 cut(s) 156, 1080, 1744
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 325, 727
BfaI CTAG 4 cut(s) 1232, 1283, 1487, 1902
BfmI CTRYAG 3 cut(s) 165, 598, 1002
BfoI RGCGCY 2 cut(s) 578, 1493
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 3 cut(s) 156, 1080, 1744
Bme18I GGWCC 3 cut(s) 89, 1031, 1082
BmeT110I CYCGRG 2 cut(s) 978, 1566
BmgT120I GGNCC 8 cut(s) 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949
BmiI GGNNCC 4 cut(s) 1320, 1422, 1449, 1950
BmrFI CCNGG 3 cut(s) 156, 1080, 1744
BmrI ACTGGG 1 cut(s) 1955
BmsI GCATC 4 cut(s) 301, 914, 959, 964
BmuI ACTGGG 1 cut(s) 1955
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 703
Bpu10I CCTNAGC 1 cut(s) 1436
Bpu14I TTCGAA 1 cut(s) 2009
BpuEI CTTGAG 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 154, 1161, 1314, 1588
BsaWI WCCGGW 1 cut(s) 58
Bse1I ACTGG 3 cut(s) 720, 960, 1950
Bse21I CCTNAGG 1 cut(s) 1323
BseBI CCWGG 3 cut(s) 156, 1080, 1744
BseDI CCNNGG 4 cut(s) 154, 1161, 1314, 1588
BseMII CTCAG 7 cut(s) 244, 272, 1314, 1348, 1428, 1458, 1646
BseNI ACTGG 3 cut(s) 720, 960, 1950
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 6 cut(s) 1135, 1237, 1339, 1798, 1849, 1951
BsiHKCI CYCGRG 2 cut(s) 978, 1566
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 2 cut(s) 319, 1555
BsmAI GTCTC 2 cut(s) 325, 727
BsmBI CGTCTC 1 cut(s) 727
BsmFI GGGAC 2 cut(s) 319, 1555
BsnI GGCC 6 cut(s) 1135, 1237, 1339, 1798, 1849, 1951
BsoBI CYCGRG 2 cut(s) 978, 1566
Bsp119I TTCGAA 1 cut(s) 2009
BspACI CCGC 4 cut(s) 281, 911, 1187, 1252
BspANI GGCC 6 cut(s) 1135, 1237, 1339, 1798, 1849, 1951
BspCNI CTCAG 7 cut(s) 243, 271, 1315, 1347, 1427, 1459, 1647
BspFNI CGCG 1 cut(s) 738
BspHI TCATGA 2 cut(s) 729, 1525
BspLI GGNNCC 4 cut(s) 1320, 1422, 1449, 1950
BspMAI CTGCAG 2 cut(s) 602, 1006
BspMI ACCTGC 1 cut(s) 43
BspT104I TTCGAA 1 cut(s) 2009
BspTI CTTAAG 1 cut(s) 515
BsrI ACTGG 3 cut(s) 720, 960, 1950
BssECI CCNNGG 4 cut(s) 154, 1161, 1314, 1588
BssSI CACGAG 1 cut(s) 1362
BssT1I CCWWGG 2 cut(s) 1314, 1588
Bst2BI CACGAG 1 cut(s) 1362
Bst2UI CCWGG 3 cut(s) 156, 1080, 1744
Bst4CI ACNGT 3 cut(s) 763, 830, 1577
Bst6I CTCTTC 3 cut(s) 571, 1014, 1980
BstAFI CTTAAG 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 2009
BstC8I GCNNGC 4 cut(s) 579, 588, 1052, 1861
BstDEI CTNAG 9 cut(s) 230, 258, 413, 1323, 1334, 1414, 1436, 1467, 1655
BstFNI CGCG 1 cut(s) 738
BstH2I RGCGCY 2 cut(s) 578, 1493
BstHHI GCGC 3 cut(s) 577, 1492, 1696
BstMAI GTCTC 2 cut(s) 325, 727
BstMWI GCNNNNNNNGC 2 cut(s) 583, 587
BstNI CCWGG 3 cut(s) 156, 1080, 1744
BstNSI RCATGY 1 cut(s) 590
BstSCI CCNGG 3 cut(s) 154, 1078, 1742
BstSFI CTRYAG 3 cut(s) 165, 598, 1002
BstUI CGCG 1 cut(s) 738
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 6 cut(s) 916, 1165, 1318, 1369, 1420, 1930
BstYI RGATCY 6 cut(s) 916, 1165, 1318, 1369, 1420, 1930
Bsu36I CCTNAGG 1 cut(s) 1323
BsuRI GGCC 6 cut(s) 1135, 1237, 1339, 1798, 1849, 1951
BtsI GCAGTG 2 cut(s) 544, 807
BtsIMutI CAGTG 4 cut(s) 222, 544, 807, 826
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 4 cut(s) 579, 588, 1052, 1861
CaiI CAGNNNCTG 3 cut(s) 221, 511, 1217
CciI TCATGA 2 cut(s) 729, 1525
CfoI GCGC 3 cut(s) 577, 1492, 1696
Cfr13I GGNCC 8 cut(s) 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949
CseI GACGC 1 cut(s) 744
Csp6I GTAC 4 cut(s) 250, 636, 723, 821
CspCI CAANNNNNGTGG 8 cut(s) 27, 62, 1482, 1517, 1686, 1721, 1737, 1772
CviAII CATG 7 cut(s) 553, 587, 661, 671, 702, 730, 1526
CviQI GTAC 4 cut(s) 250, 636, 723, 821
DdeI CTNAG 9 cut(s) 230, 258, 413, 1323, 1334, 1414, 1436, 1467, 1655
Eam1104I CTCTTC 3 cut(s) 571, 1014, 1980
EarI CTCTTC 3 cut(s) 571, 1014, 1980
Eco130I CCWWGG 2 cut(s) 1314, 1588
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 3 cut(s) 89, 1031, 1082
Eco47III AGCGCT 1 cut(s) 576
Eco57I CTGAAG 6 cut(s) 184, 552, 1166, 1446, 1650, 1793
Eco81I CCTNAGG 1 cut(s) 1323
Eco88I CYCGRG 2 cut(s) 978, 1566
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 3 cut(s) 154, 1078, 1742
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 1314, 1588
ErhI CCWWGG 2 cut(s) 1314, 1588
Esp3I CGTCTC 1 cut(s) 727
FaeI CATG 7 cut(s) 556, 590, 664, 674, 705, 733, 1529
FalI AAGNNNNNCTT 8 cut(s) 1011, 1043, 1164, 1196, 1419, 1451, 1623, 1655
FaqI GGGAC 2 cut(s) 319, 1555
FatI CATG 7 cut(s) 552, 586, 660, 670, 701, 729, 1525
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 525
FspBI CTAG 4 cut(s) 1232, 1283, 1487, 1902
GlaI GCGC 3 cut(s) 576, 1491, 1695
GsuI CTGGAG 1 cut(s) 703
HaeII RGCGCY 2 cut(s) 578, 1493
HaeIII GGCC 6 cut(s) 1135, 1237, 1339, 1798, 1849, 1951
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 744
HhaI GCGC 3 cut(s) 577, 1492, 1696
Hin1II CATG 7 cut(s) 556, 590, 664, 674, 705, 733, 1529
Hin6I GCGC 3 cut(s) 575, 1490, 1694
HinP1I GCGC 3 cut(s) 575, 1490, 1694
HincII GTYRAC 4 cut(s) 18, 178, 526, 996
HindII GTYRAC 4 cut(s) 18, 178, 526, 996
HindIII AAGCTT 3 cut(s) 776, 1433, 1637
HinfI GANTC 7 cut(s) 284, 508, 674, 1624, 1766, 1817, 1871
HpaI GTTAAC 1 cut(s) 996
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 6 cut(s) 233, 261, 325, 349, 571, 1417
HpyAV CCTTC 7 cut(s) 73, 102, 623, 873, 1666, 1768, 1819
HpyCH4III ACNGT 3 cut(s) 763, 830, 1577
HpyCH4IV ACGT 1 cut(s) 1792
HpyCH4V TGCA 9 cut(s) 38, 314, 368, 549, 600, 621, 653, 800, 1004
HpyF10VI GCNNNNNNNGC 2 cut(s) 583, 587
HpyF3I CTNAG 9 cut(s) 230, 258, 413, 1323, 1334, 1414, 1436, 1467, 1655
HpySE526I ACGT 1 cut(s) 1792
Hsp92II CATG 7 cut(s) 556, 590, 664, 674, 705, 733, 1529
HspAI GCGC 3 cut(s) 575, 1490, 1694
Ksp22I TGATCA 1 cut(s) 325
KspAI GTTAAC 1 cut(s) 996
LmnI GCTCC 2 cut(s) 722, 934
LweI GCATC 4 cut(s) 301, 914, 959, 964
MaeI CTAG 4 cut(s) 1232, 1283, 1487, 1902
MaeII ACGT 1 cut(s) 1792
MaeIII GTNAC 4 cut(s) 397, 656, 1144, 1894
MboII GAAGA 8 cut(s) 83, 190, 440, 558, 875, 945, 1031, 1997
MflI RGATCY 6 cut(s) 916, 1165, 1318, 1369, 1420, 1930
MlyI GAGTC 3 cut(s) 293, 502, 1865
MseI TTAA 3 cut(s) 516, 561, 995
MslI CAYNNNNRTG 1 cut(s) 333
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 3 cut(s) 156, 1080, 1744
MvaI CCWGG 3 cut(s) 156, 1080, 1744
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 2 cut(s) 583, 587
NlaIII CATG 7 cut(s) 556, 590, 664, 674, 705, 733, 1529
NlaIV GGNNCC 4 cut(s) 1320, 1422, 1449, 1950
NmeAIII GCCGAG 1 cut(s) 607
NmuCI GTSAC 2 cut(s) 656, 1144
NspI RCATGY 1 cut(s) 590
NspV TTCGAA 1 cut(s) 2009
PaeI GCATGC 1 cut(s) 590
PaeR7I CTCGAG 1 cut(s) 978
PagI TCATGA 2 cut(s) 729, 1525
PfeI GAWTC 4 cut(s) 674, 1624, 1766, 1817
PleI GAGTC 3 cut(s) 292, 502, 1865
PpsI GAGTC 3 cut(s) 292, 502, 1865
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 3 cut(s) 154, 1078, 1742
PspGI CCWGG 3 cut(s) 154, 1078, 1742
PspN4I GGNNCC 4 cut(s) 1320, 1422, 1449, 1950
PspPI GGNCC 8 cut(s) 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 2 cut(s) 602, 1006
PstNI CAGNNNCTG 3 cut(s) 221, 511, 1217
PsuI RGATCY 6 cut(s) 916, 1165, 1318, 1369, 1420, 1930
RsaI GTAC 4 cut(s) 251, 637, 724, 822
RsaNI GTAC 4 cut(s) 250, 636, 723, 821
RseI CAYNNNNRTG 1 cut(s) 333
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 3 cut(s) 516, 561, 995
Sau96I GGNCC 8 cut(s) 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949
SchI GAGTC 3 cut(s) 293, 502, 1865
ScrFI CCNGG 3 cut(s) 156, 1080, 1744
SfaNI GCATC 4 cut(s) 301, 914, 959, 964
SfcI CTRYAG 3 cut(s) 165, 598, 1002
Sfr274I CTCGAG 1 cut(s) 978
SfuI TTCGAA 1 cut(s) 2009
SinI GGWCC 3 cut(s) 89, 1031, 1082
SlaI CTCGAG 1 cut(s) 978
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 141, 515, 978
SmoI CTYRAG 3 cut(s) 141, 515, 978
SphI GCATGC 1 cut(s) 590
SsiI CCGC 4 cut(s) 281, 911, 1187, 1252
SspMI CTAG 4 cut(s) 1232, 1283, 1487, 1902
StyD4I CCNGG 3 cut(s) 154, 1078, 1742
StyI CCWWGG 2 cut(s) 1314, 1588
TaaI ACNGT 3 cut(s) 763, 830, 1577
TaiI ACGT 1 cut(s) 1795
TaqI TCGA 3 cut(s) 525, 979, 2009
TatI WGTACW 2 cut(s) 249, 635
TauI GCSGC 2 cut(s) 1189, 1254
TfiI GAWTC 4 cut(s) 674, 1624, 1766, 1817
Tru1I TTAA 3 cut(s) 516, 561, 995
Tru9I TTAA 3 cut(s) 516, 561, 995
TscAI CASTG 4 cut(s) 222, 551, 807, 833
TseFI GTSAC 2 cut(s) 656, 1144
Tsp45I GTSAC 2 cut(s) 656, 1144
TspGWI ACGGA 2 cut(s) 321, 1154
TspRI CASTG 4 cut(s) 222, 551, 807, 833
Vha464I CTTAAG 1 cut(s) 515
VpaK11BI GGWCC 3 cut(s) 89, 1031, 1082
XapI RAATTY 2 cut(s) 271, 1879
XceI RCATGY 1 cut(s) 590
XhoI CTCGAG 1 cut(s) 978
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 4 cut(s) 1232, 1283, 1487, 1902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.