TRAF-type zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G11950 AT3G11950 AT3G11950 AT3G11950 AT3G11950 |
| fragaria_vesca | FvH4_7g05020 FvH4_7g05020 |
| malus_domestica | MD02G1263700.v1.1 MD07G1054500.v1.1 |
| prunus_persica | Prupe.2G061200_v2.0.a1 Prupe.2G061200_v2.0.a1 Prupe.2G061200_v2.0.a1 |
| pyrus_communis | pycom07g04230 |
| rosa_chinensis | RchiOBHm_Chr1g0331291 RchiOBHm_Chr1g0331341 |
| rosa_laevigata | RLG00000029742 |
| rosa_multiflora | Rmu_sc0005956.1_g000011 Rmu_sc0005956.1_g000015 Rmu_sc0011261.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00319230 |
| rosa_rugosa | Rorug01G0092700 |
| rosa_samantha | Rh1AG117200 Rh1AG117600 Rh1AG117700 Rh1BG088200 Rh1BG088400 Rh1CG112200 Rh1CG112500 Rh1DG121400 |
| rosa_wichuraiana | Rw1G009380 Rw1G009400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 43, 2038 |
| AccBSI | CCGCTC | 1 cut(s) | 2022 |
| AccII | CGCG | 1 cut(s) | 738 |
| AciI | CCGC | 2 cut(s) | 911, 2022 |
| AcsI | RAATTY | 4 cut(s) | 271, 382, 557, 2000 |
| AcuI | CTGAAG | 2 cut(s) | 198, 1491 |
| AfaI | GTAC | 1 cut(s) | 640 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1029, 1781, 1934, 1935 |
| AflII | CTTAAG | 1 cut(s) | 515 |
| AhlI | ACTAGT | 1 cut(s) | 1540 |
| AjnI | CCWGG | 3 cut(s) | 154, 1365, 1747 |
| AluBI | AGCT | 7 cut(s) | 140, 164, 170, 503, 577, 778, 931 |
| AluI | AGCT | 7 cut(s) | 140, 164, 170, 503, 577, 778, 931 |
| Alw26I | GTCTC | 1 cut(s) | 727 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 221 |
| Ama87I | CYCGRG | 3 cut(s) | 978, 1265, 1520 |
| ApoI | RAATTY | 4 cut(s) | 271, 382, 557, 2000 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2042, 2074 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 126 |
| AspLEI | GCGC | 1 cut(s) | 308 |
| AsuHPI | GGTGA | 1 cut(s) | 203 |
| AsuII | TTCGAA | 1 cut(s) | 2321 |
| AvaI | CYCGRG | 3 cut(s) | 978, 1265, 1520 |
| AvaII | GGWCC | 4 cut(s) | 89, 204, 1187, 1493 |
| AxyI | CCTNAGG | 3 cut(s) | 1086, 1293, 1395 |
| BccI | CCATC | 7 cut(s) | 68, 77, 235, 296, 399, 451, 734 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1501, 1535 |
| BciT130I | CCWGG | 3 cut(s) | 156, 1367, 1749 |
| BclI | TGATCA | 2 cut(s) | 325, 2172 |
| BcoDI | GTCTC | 1 cut(s) | 727 |
| BcuI | ACTAGT | 1 cut(s) | 1540 |
| BfmI | CTRYAG | 2 cut(s) | 165, 2031 |
| BfrI | CTTAAG | 1 cut(s) | 515 |
| BfuAI | ACCTGC | 2 cut(s) | 43, 2038 |
| BglII | AGATCT | 2 cut(s) | 1474, 2038 |
| Bme1390I | CCNGG | 3 cut(s) | 156, 1367, 1749 |
| Bme18I | GGWCC | 4 cut(s) | 89, 204, 1187, 1493 |
| BmeT110I | CYCGRG | 3 cut(s) | 978, 1265, 1520 |
| BmiI | GGNNCC | 2 cut(s) | 206, 1134 |
| BmrFI | CCNGG | 3 cut(s) | 156, 1367, 1749 |
| BmsI | GCATC | 6 cut(s) | 301, 914, 959, 964, 2086, 2250 |
| BpmI | CTGGAG | 2 cut(s) | 552, 953 |
| Bpu14I | TTCGAA | 1 cut(s) | 2321 |
| BpuEI | CTTGAG | 2 cut(s) | 126, 1409 |
| BsaJI | CCNNGG | 5 cut(s) | 154, 1266, 1365, 1601, 1748 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1029, 1781, 1934, 1935 |
| Bse1I | ACTGG | 2 cut(s) | 569, 960 |
| Bse21I | CCTNAGG | 3 cut(s) | 1086, 1293, 1395 |
| BseBI | CCWGG | 3 cut(s) | 156, 1367, 1749 |
| BseDI | CCNNGG | 5 cut(s) | 154, 1266, 1365, 1601, 1748 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1029, 1781, 1934, 1935 |
| BseMII | CTCAG | 5 cut(s) | 272, 518, 1638, 1842, 1995 |
| BseNI | ACTGG | 2 cut(s) | 569, 960 |
| BseRI | GAGGAG | 1 cut(s) | 2317 |
| Bsh1236I | CGCG | 1 cut(s) | 738 |
| BsiHKCI | CYCGRG | 3 cut(s) | 978, 1265, 1520 |
| BslFI | GGGAC | 1 cut(s) | 1657 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1029, 1781, 1934, 1935 |
| BsmAI | GTCTC | 1 cut(s) | 727 |
| BsmBI | CGTCTC | 1 cut(s) | 727 |
| BsmFI | GGGAC | 1 cut(s) | 1657 |
| BsmI | GAATGC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 3 cut(s) | 978, 1265, 1520 |
| Bsp119I | TTCGAA | 1 cut(s) | 2321 |
| BspACI | CCGC | 2 cut(s) | 911, 2022 |
| BspCNI | CTCAG | 5 cut(s) | 271, 517, 1637, 1841, 1994 |
| BspFNI | CGCG | 1 cut(s) | 738 |
| BspHI | TCATGA | 2 cut(s) | 729, 1426 |
| BspLI | GGNNCC | 2 cut(s) | 206, 1134 |
| BspMAI | CTGCAG | 1 cut(s) | 2035 |
| BspMI | ACCTGC | 2 cut(s) | 43, 2038 |
| BspT104I | TTCGAA | 1 cut(s) | 2321 |
| BspTI | CTTAAG | 1 cut(s) | 515 |
| BsrBI | CCGCTC | 1 cut(s) | 2022 |
| BsrI | ACTGG | 2 cut(s) | 569, 960 |
| BssECI | CCNNGG | 5 cut(s) | 154, 1266, 1365, 1601, 1748 |
| BssT1I | CCWWGG | 1 cut(s) | 1601 |
| Bst2UI | CCWGG | 3 cut(s) | 156, 1367, 1749 |
| Bst4CI | ACNGT | 3 cut(s) | 643, 763, 830 |
| Bst6I | CTCTTC | 1 cut(s) | 484 |
| BstAFI | CTTAAG | 1 cut(s) | 515 |
| BstBI | TTCGAA | 1 cut(s) | 2321 |
| BstC8I | GCNNGC | 6 cut(s) | 579, 1052, 1157, 1208, 1612, 2129 |
| BstFNI | CGCG | 1 cut(s) | 738 |
| BstHHI | GCGC | 1 cut(s) | 308 |
| BstMAI | GTCTC | 1 cut(s) | 727 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 218, 583 |
| BstNI | CCWGG | 3 cut(s) | 156, 1367, 1749 |
| BstSCI | CCNGG | 3 cut(s) | 154, 1365, 1747 |
| BstSFI | CTRYAG | 2 cut(s) | 165, 2031 |
| BstUI | CGCG | 1 cut(s) | 738 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1086, 1293, 1395 |
| BtsI | GCAGTG | 2 cut(s) | 544, 807 |
| BtsIMutI | CAGTG | 5 cut(s) | 222, 544, 576, 807, 826 |
| BveI | ACCTGC | 2 cut(s) | 43, 2038 |
| Cac8I | GCNNGC | 6 cut(s) | 579, 1052, 1157, 1208, 1612, 2129 |
| CaiI | CAGNNNCTG | 1 cut(s) | 221 |
| CciI | TCATGA | 2 cut(s) | 729, 1426 |
| CfoI | GCGC | 1 cut(s) | 308 |
| CseI | GACGC | 1 cut(s) | 744 |
| Csp6I | GTAC | 1 cut(s) | 639 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 27, 62 |
| CviAII | CATG | 5 cut(s) | 671, 702, 730, 742, 1427 |
| CviQI | GTAC | 1 cut(s) | 639 |
| Eam1104I | CTCTTC | 1 cut(s) | 484 |
| EarI | CTCTTC | 1 cut(s) | 484 |
| EciI | GGCGGA | 1 cut(s) | 926 |
| Eco130I | CCWWGG | 1 cut(s) | 1601 |
| Eco32I | GATATC | 1 cut(s) | 196 |
| Eco47I | GGWCC | 4 cut(s) | 89, 204, 1187, 1493 |
| Eco57I | CTGAAG | 2 cut(s) | 198, 1491 |
| Eco81I | CCTNAGG | 3 cut(s) | 1086, 1293, 1395 |
| Eco88I | CYCGRG | 3 cut(s) | 978, 1265, 1520 |
| EcoO109I | RGGNCCY | 3 cut(s) | 89, 1082, 1289 |
| EcoRII | CCWGG | 3 cut(s) | 154, 1365, 1747 |
| EcoRV | GATATC | 1 cut(s) | 196 |
| EcoT14I | CCWWGG | 1 cut(s) | 1601 |
| ErhI | CCWWGG | 1 cut(s) | 1601 |
| Esp3I | CGTCTC | 1 cut(s) | 727 |
| FaeI | CATG | 5 cut(s) | 674, 705, 733, 745, 1430 |
| FaqI | GGGAC | 1 cut(s) | 1657 |
| FatI | CATG | 5 cut(s) | 670, 701, 729, 741, 1426 |
| FbaI | TGATCA | 2 cut(s) | 325, 2172 |
| GlaI | GCGC | 1 cut(s) | 307 |
| GsuI | CTGGAG | 2 cut(s) | 552, 953 |
| HgaI | GACGC | 1 cut(s) | 744 |
| HhaI | GCGC | 1 cut(s) | 308 |
| Hin1II | CATG | 5 cut(s) | 674, 705, 733, 745, 1430 |
| Hin6I | GCGC | 1 cut(s) | 306 |
| HinP1I | GCGC | 1 cut(s) | 306 |
| HincII | GTYRAC | 2 cut(s) | 18, 178 |
| HindII | GTYRAC | 2 cut(s) | 18, 178 |
| HinfI | GANTC | 4 cut(s) | 284, 674, 1238, 2234 |
| HphI | GGTGA | 1 cut(s) | 203 |
| Hpy166II | GTNNAC | 5 cut(s) | 18, 130, 178, 526, 707 |
| Hpy188I | TCNGA | 7 cut(s) | 261, 325, 349, 853, 1627, 1831, 1984 |
| Hpy8I | GTNNAC | 5 cut(s) | 18, 130, 178, 526, 707 |
| HpyAV | CCTTC | 1 cut(s) | 1928 |
| HpyCH4III | ACNGT | 3 cut(s) | 643, 763, 830 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 218, 583 |
| Hsp92II | CATG | 5 cut(s) | 674, 705, 733, 745, 1430 |
| HspAI | GCGC | 1 cut(s) | 306 |
| Ksp22I | TGATCA | 2 cut(s) | 325, 2172 |
| LmnI | GCTCC | 4 cut(s) | 574, 722, 934, 1175 |
| LweI | GCATC | 6 cut(s) | 301, 914, 959, 964, 2086, 2250 |
| MaeIII | GTNAC | 1 cut(s) | 656 |
| MbiI | CCGCTC | 1 cut(s) | 2022 |
| MlyI | GAGTC | 3 cut(s) | 668, 1247, 2243 |
| MroXI | GAANNNNTTC | 1 cut(s) | 126 |
| MseI | TTAA | 4 cut(s) | 516, 531, 561, 995 |
| MslI | CAYNNNNRTG | 1 cut(s) | 333 |
| MspA1I | CMGCKG | 1 cut(s) | 931 |
| MspCI | CTTAAG | 1 cut(s) | 515 |
| MspR9I | CCNGG | 3 cut(s) | 156, 1367, 1749 |
| Mva1269I | GAATGC | 1 cut(s) | 95 |
| MvaI | CCWGG | 3 cut(s) | 156, 1367, 1749 |
| MvnI | CGCG | 1 cut(s) | 738 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 218, 583 |
| NlaIII | CATG | 5 cut(s) | 674, 705, 733, 745, 1430 |
| NlaIV | GGNNCC | 2 cut(s) | 206, 1134 |
| NmuCI | GTSAC | 1 cut(s) | 656 |
| NspV | TTCGAA | 1 cut(s) | 2321 |
| PaeR7I | CTCGAG | 2 cut(s) | 978, 1520 |
| PagI | TCATGA | 2 cut(s) | 729, 1426 |
| PctI | GAATGC | 1 cut(s) | 95 |
| PdmI | GAANNNNTTC | 1 cut(s) | 126 |
| PfeI | GAWTC | 1 cut(s) | 284 |
| PleI | GAGTC | 3 cut(s) | 668, 1246, 2242 |
| PpsI | GAGTC | 3 cut(s) | 668, 1246, 2242 |
| PpuMI | RGGWCCY | 1 cut(s) | 89 |
| Psp5II | RGGWCCY | 1 cut(s) | 89 |
| Psp6I | CCWGG | 3 cut(s) | 154, 1365, 1747 |
| PspGI | CCWGG | 3 cut(s) | 154, 1365, 1747 |
| PspN4I | GGNNCC | 2 cut(s) | 206, 1134 |
| PspPPI | RGGWCCY | 1 cut(s) | 89 |
| PspXI | VCTCGAGB | 1 cut(s) | 1520 |
| PstI | CTGCAG | 1 cut(s) | 2035 |
| PstNI | CAGNNNCTG | 1 cut(s) | 221 |
| PvuII | CAGCTG | 1 cut(s) | 931 |
| RsaI | GTAC | 1 cut(s) | 640 |
| RsaNI | GTAC | 1 cut(s) | 639 |
| RseI | CAYNNNNRTG | 1 cut(s) | 333 |
| SaqAI | TTAA | 4 cut(s) | 516, 531, 561, 995 |
| SchI | GAGTC | 3 cut(s) | 668, 1247, 2243 |
| ScrFI | CCNGG | 3 cut(s) | 156, 1367, 1749 |
| SfaNI | GCATC | 6 cut(s) | 301, 914, 959, 964, 2086, 2250 |
| SfcI | CTRYAG | 2 cut(s) | 165, 2031 |
| Sfr274I | CTCGAG | 2 cut(s) | 978, 1520 |
| SfuI | TTCGAA | 1 cut(s) | 2321 |
| SinI | GGWCC | 4 cut(s) | 89, 204, 1187, 1493 |
| SlaI | CTCGAG | 2 cut(s) | 978, 1520 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 333 |
| SmlI | CTYRAG | 5 cut(s) | 141, 515, 978, 1388, 1520 |
| SmoI | CTYRAG | 5 cut(s) | 141, 515, 978, 1388, 1520 |
| SpeI | ACTAGT | 1 cut(s) | 1540 |
| SsiI | CCGC | 2 cut(s) | 911, 2022 |
| StyD4I | CCNGG | 3 cut(s) | 154, 1365, 1747 |
| StyI | CCWWGG | 1 cut(s) | 1601 |
| TaaI | ACNGT | 3 cut(s) | 643, 763, 830 |
| TaqI | TCGA | 4 cut(s) | 979, 1521, 2315, 2321 |
| TauI | GCSGC | 1 cut(s) | 2025 |
| TfiI | GAWTC | 1 cut(s) | 284 |
| Tru1I | TTAA | 4 cut(s) | 516, 531, 561, 995 |
| Tru9I | TTAA | 4 cut(s) | 516, 531, 561, 995 |
| TscAI | CASTG | 5 cut(s) | 222, 551, 576, 807, 833 |
| TseFI | GTSAC | 1 cut(s) | 656 |
| Tsp45I | GTSAC | 1 cut(s) | 656 |
| TspDTI | ATGAA | 7 cut(s) | 139, 552, 569, 788, 1443, 2028, 2181 |
| TspGWI | ACGGA | 1 cut(s) | 2282 |
| TspRI | CASTG | 5 cut(s) | 222, 551, 576, 807, 833 |
| Vha464I | CTTAAG | 1 cut(s) | 515 |
| VpaK11BI | GGWCC | 4 cut(s) | 89, 204, 1187, 1493 |
| XapI | RAATTY | 4 cut(s) | 271, 382, 557, 2000 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1373 |
| XhoI | CTCGAG | 2 cut(s) | 978, 1520 |
| XmnI | GAANNNNTTC | 1 cut(s) | 126 |