Rh1AG117700

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004794
Physical Location & Seq
Reverse (-)
20165866 .. 20168976
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG117700.1

Sequence Viewer

Length: 1293 bp
ATGAAAATGATGCAGGAATTGTCAACCATCGATGACCTACCTGCGACTAATGTGGAACTGGAACCGGAAAAGATAGAAGATGGGAAAGATGGAGGTCCTTCATTCCACTGTAAACTTTACAGCACGGAATTAGTCCACAAGATATCTCAGGTTTTCATTCCTGGATTAGCTACTGCATGTGTTGATAACACATCTGGTGATATCTTCAAAACCCCTGCTTCTGTGGCCGCCGATGTGAGAAAGGAAATGGTGGAGTATATCACTCAAAGAAGTGAGAATTTTGTTGCAGAATCTGTTATCCTAGAAGGGGGCCAAGATGGACAAGTATCTGATCATCCCTATGACATAATTTCTGATTTTGTTGATGACTTTGCAAGTTTCAAAAGAAATTTGTTTAGTCGGGTTTCGGGATGGCTGCTCAGTGAAAAGAGAGAAGATAAAATAGATGATTTTGTTCAAGAGATGGAAATAAATGGCTTTTGGCTGGTTGATAAAAGAGAAACAATAGCACAGAATTTGCTAAAGAATGTCGATCTTAAGAATGAGCATCACTGCAATATGAAATTTCACACCCCAGAGGAGCTTGAAGCGCATGTTCTAAAGTGTAGCTATAGGTCTATGAGTTGCATACATGAAGGATGTAATGTCATATTTTGTGCAAGTCAGGTGGATGAACATGATGCAGTTTGCCCCTTCAAGATAATTCCATGCGAACAAAACTGCTCCGACATGATCATGAGACGTGAAATGGACAGACATTGTATTACCATCTGTCCAATGAAGCTTGTTAGTTGTCCGTTCTATGCAGTGGGTTGTCAATCCCCGGTACCACATTGTAAGCTTGAGCAGCATCGTTCAGATGATCTCCATTCTCACATGCTATTTGTTCTACAGAATATTCATAAGGAAGCATCTATGGAAGATCTGAAAAGAAGGCTGGAGCAACTAAAAGATGCATCTTCATCCAATAACTTAGCACAAGCTCGAGATGTGAGATCACTAACCTCTGCAGTCAAGGATCTTGAAGCAAAACTAGGGCCGATGGAAATTAGCAGGAAACACCATAAGGATCTTGAACCAGAACATGGGCCAGAGGAAGTAGGCAGCAAAAGCAAAACTCCAGAGGATGTGGAATCAGGGCCAAAAGAAGTGAGTAAAAAACCTGAGGAGGACTTTGAAGCAAAACCAGCACCAAAGGAAGTTAGCCAACAGTCGGAGTATCTTGAAGTAAAAACAAAGGTTTATCCGAATATGGATCCGAATACAAGCTCTCGAATAAAGACTGGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

430

Amino Acids

48.7

Weight (kDa)

5.25

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 226 - 284 4.4e-11 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
Acc65I GGTACC 1 cut(s) 826
AccB1I GGYRCC 1 cut(s) 826
AccB7I CCANNNNNTGG 1 cut(s) 1085
AciI CCGC 1 cut(s) 228
AclWI GGATC 4 cut(s) 1026, 1077, 1250, 1263
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 4 cut(s) 277, 388, 514, 563
AfaI GTAC 1 cut(s) 828
AfiI CCNNNNNNNGG 3 cut(s) 307, 1085, 1213
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 9 cut(s) 208, 382, 458, 587, 697, 1025, 1076, 1178, 1226
AjiI CACGTC 1 cut(s) 743
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 7 cut(s) 170, 583, 609, 784, 841, 983, 1269
AluI AGCT 7 cut(s) 170, 583, 609, 784, 841, 983, 1269
Alw26I GTCTC 1 cut(s) 733
AlwI GGATC 4 cut(s) 1026, 1077, 1250, 1263
AlwNI CAGNNNCTG 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 984
AoxI GGCC 5 cut(s) 225, 310, 1037, 1088, 1139
ApeKI GCWGC 3 cut(s) 415, 847, 1104
ApoI RAATTY 4 cut(s) 277, 388, 514, 563
Asp718I GGTACC 1 cut(s) 826
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 5 cut(s) 95, 310, 1037, 1088, 1139
AsuC2I CCSGG 1 cut(s) 824
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 984
AvaII GGWCC 1 cut(s) 95
AxyI CCTNAGG 1 cut(s) 1164
BamHI GGATCC 1 cut(s) 1255
BanI GGYRCC 1 cut(s) 826
BbvI GCAGC 3 cut(s) 402, 859, 1116
BccI CCATC 8 cut(s) 35, 74, 83, 311, 405, 457, 776, 1036
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 2 cut(s) 331, 732
BcnI CCSGG 1 cut(s) 824
BcoDI GTCTC 1 cut(s) 733
BfaI CTAG 2 cut(s) 302, 1034
BfmI CTRYAG 3 cut(s) 610, 890, 1008
BfrI CTTAAG 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 49
BglII AGATCT 1 cut(s) 922
BisI GCNGC 4 cut(s) 228, 416, 848, 1105
BlsI GCNGC 4 cut(s) 229, 417, 849, 1106
Bme1390I CCNGG 2 cut(s) 162, 824
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 984
BmgBI CACGTC 1 cut(s) 743
BmgT120I GGNCC 5 cut(s) 95, 310, 1037, 1088, 1139
BmiI GGNNCC 4 cut(s) 63, 311, 828, 1257
BmrFI CCNGG 2 cut(s) 162, 824
BmrI ACTGGG 1 cut(s) 1293
BmsI GCATC 6 cut(s) 556, 670, 859, 920, 943, 965
BmuI ACTGGG 1 cut(s) 1293
BpmI CTGGAG 2 cut(s) 959, 1104
BpuEI CTTGAG 1 cut(s) 863
BpuMI CCSGG 1 cut(s) 824
Bsa29I ATCGAT 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 822
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 1085, 1213
Bse1I ACTGG 2 cut(s) 63, 1288
Bse21I CCTNAGG 1 cut(s) 1164
BseBI CCWGG 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 822
BseGI GGATG 6 cut(s) 334, 416, 644, 676, 962, 1132
BseLI CCNNNNNNNGG 3 cut(s) 307, 1085, 1213
BseMII CTCAG 3 cut(s) 161, 433, 1155
BseNI ACTGG 2 cut(s) 63, 1288
BseRI GAGGAG 2 cut(s) 593, 1181
BseXI GCAGC 3 cut(s) 402, 859, 1116
BshFI GGCC 5 cut(s) 227, 312, 1039, 1090, 1141
BshNI GGYRCC 1 cut(s) 826
BshVI ATCGAT 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 984
BsiSI CCGG 2 cut(s) 65, 824
BslI CCNNNNNNNGG 3 cut(s) 307, 1085, 1213
BsmAI GTCTC 1 cut(s) 733
BsmBI CGTCTC 1 cut(s) 733
BsnI GGCC 5 cut(s) 227, 312, 1039, 1090, 1141
BsoBI CYCGRG 1 cut(s) 984
Bsp143I GATC 9 cut(s) 331, 532, 732, 862, 922, 995, 1018, 1069, 1255
BspACI CCGC 1 cut(s) 228
BspANI GGCC 5 cut(s) 227, 312, 1039, 1090, 1141
BspCNI CTCAG 3 cut(s) 160, 432, 1156
BspDI ATCGAT 1 cut(s) 30
BspHI TCATGA 1 cut(s) 735
BspLI GGNNCC 4 cut(s) 63, 311, 828, 1257
BspMAI CTGCAG 1 cut(s) 1012
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 4 cut(s) 1026, 1077, 1250, 1263
BspT107I GGYRCC 1 cut(s) 826
BspTI CTTAAG 1 cut(s) 536
BsrI ACTGG 2 cut(s) 63, 1288
BssECI CCNNGG 1 cut(s) 822
BssMI GATC 9 cut(s) 331, 532, 732, 862, 922, 995, 1018, 1069, 1255
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 110, 1212
BstAFI CTTAAG 1 cut(s) 536
BstDEI CTNAG 4 cut(s) 147, 419, 973, 1164
BstF5I GGATG 6 cut(s) 334, 416, 644, 676, 962, 1132
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 9 cut(s) 334, 535, 735, 865, 925, 998, 1021, 1072, 1258
BstMAI GTCTC 1 cut(s) 733
BstMBI GATC 9 cut(s) 331, 532, 732, 862, 922, 995, 1018, 1069, 1255
BstMWI GCNNNNNNNGC 5 cut(s) 224, 589, 847, 1110, 1187
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 3 cut(s) 180, 596, 880
BstSCI CCNGG 2 cut(s) 160, 822
BstSFI CTRYAG 3 cut(s) 610, 890, 1008
BstV1I GCAGC 3 cut(s) 402, 859, 1116
BstX2I RGATCY 4 cut(s) 922, 1018, 1069, 1255
BstYI RGATCY 4 cut(s) 922, 1018, 1069, 1255
Bsu15I ATCGAT 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 1164
BsuRI GGCC 5 cut(s) 227, 312, 1039, 1090, 1141
BsuTUI ATCGAT 1 cut(s) 30
BtrI CACGTC 1 cut(s) 743
BtsCI GGATG 6 cut(s) 334, 416, 644, 676, 962, 1132
BtsI GCAGTG 2 cut(s) 550, 813
BtsIMutI CAGTG 4 cut(s) 106, 427, 550, 813
BveI ACCTGC 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 293
CciI TCATGA 1 cut(s) 735
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 5 cut(s) 95, 310, 1037, 1088, 1139
ClaI ATCGAT 1 cut(s) 30
Csp6I GTAC 1 cut(s) 827
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 9 cut(s) 177, 593, 632, 677, 708, 730, 736, 877, 1085
CviQI GTAC 1 cut(s) 827
DdeI CTNAG 4 cut(s) 147, 419, 973, 1164
DpnI GATC 9 cut(s) 333, 534, 734, 864, 924, 997, 1020, 1071, 1257
DpnII GATC 9 cut(s) 331, 532, 732, 862, 922, 995, 1018, 1069, 1255
EaeI YGGCCR 1 cut(s) 225
Eco32I GATATC 2 cut(s) 144, 202
Eco47I GGWCC 1 cut(s) 95
Eco81I CCTNAGG 1 cut(s) 1164
Eco88I CYCGRG 1 cut(s) 984
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 160
EcoRV GATATC 2 cut(s) 144, 202
EcoT22I ATGCAT 1 cut(s) 958
Esp3I CGTCTC 1 cut(s) 733
FaeI CATG 9 cut(s) 180, 596, 635, 680, 711, 733, 739, 880, 1088
FatI CATG 9 cut(s) 176, 592, 631, 676, 707, 729, 735, 876, 1084
FbaI TGATCA 2 cut(s) 331, 732
Fnu4HI GCNGC 4 cut(s) 228, 416, 848, 1105
FokI GGATG 6 cut(s) 321, 423, 651, 683, 949, 1139
Fsp4HI GCNGC 4 cut(s) 228, 416, 848, 1105
FspBI CTAG 2 cut(s) 302, 1034
GlaI GCGC 1 cut(s) 591
GluI GCNGC 4 cut(s) 228, 416, 848, 1105
GsuI CTGGAG 2 cut(s) 959, 1104
HaeIII GGCC 5 cut(s) 227, 312, 1039, 1090, 1141
HapII CCGG 2 cut(s) 65, 824
HhaI GCGC 1 cut(s) 592
Hin1II CATG 9 cut(s) 180, 596, 635, 680, 711, 733, 739, 880, 1088
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 2 cut(s) 782, 839
HinfI GANTC 2 cut(s) 290, 1133
HpaII CCGG 2 cut(s) 65, 824
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 3 cut(s) 24, 113, 136
Hpy188I TCNGA 8 cut(s) 331, 355, 727, 859, 927, 1216, 1248, 1260
Hpy8I GTNNAC 3 cut(s) 24, 113, 136
HpyAV CCTTC 5 cut(s) 108, 299, 629, 703, 927
HpyCH4III ACNGT 2 cut(s) 110, 1212
HpyCH4IV ACGT 1 cut(s) 742
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 589, 847, 1110, 1187
HpyF3I CTNAG 4 cut(s) 147, 419, 973, 1164
HpySE526I ACGT 1 cut(s) 742
Hsp92II CATG 9 cut(s) 180, 596, 635, 680, 711, 733, 739, 880, 1088
HspAI GCGC 1 cut(s) 590
KpnI GGTACC 1 cut(s) 830
Ksp22I TGATCA 2 cut(s) 331, 732
Kzo9I GATC 9 cut(s) 331, 532, 732, 862, 922, 995, 1018, 1069, 1255
LmnI GCTCC 3 cut(s) 580, 728, 940
Lsp1109I GCAGC 3 cut(s) 402, 859, 1116
LweI GCATC 6 cut(s) 556, 670, 859, 920, 943, 965
MaeI CTAG 2 cut(s) 302, 1034
MaeII ACGT 1 cut(s) 742
MalI GATC 9 cut(s) 333, 534, 734, 864, 924, 997, 1020, 1071, 1257
MboI GATC 9 cut(s) 331, 532, 732, 862, 922, 995, 1018, 1069, 1255
MboII GAAGA 5 cut(s) 89, 196, 446, 932, 951
MflI RGATCY 4 cut(s) 922, 1018, 1069, 1255
MluCI AATT 9 cut(s) 17, 128, 277, 348, 388, 514, 563, 702, 1047
MmeI TCCRAC 2 cut(s) 750, 1194
MnlI CCTC 7 cut(s) 86, 571, 1015, 1087, 1117, 1159, 1162
Mph1103I ATGCAT 1 cut(s) 958
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 2 cut(s) 339, 734
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 2 cut(s) 65, 824
MspR9I CCNGG 2 cut(s) 162, 824
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 5 cut(s) 224, 589, 847, 1110, 1187
NciI CCSGG 1 cut(s) 824
NdeII GATC 9 cut(s) 331, 532, 732, 862, 922, 995, 1018, 1069, 1255
NlaIII CATG 9 cut(s) 180, 596, 635, 680, 711, 733, 739, 880, 1088
NlaIV GGNNCC 4 cut(s) 63, 311, 828, 1257
NsiI ATGCAT 1 cut(s) 958
NspI RCATGY 3 cut(s) 180, 596, 880
PaeR7I CTCGAG 1 cut(s) 984
PagI TCATGA 1 cut(s) 735
PfeI GAWTC 2 cut(s) 290, 1133
PflMI CCANNNNNTGG 1 cut(s) 1085
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 4 cut(s) 229, 417, 849, 1106
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 4 cut(s) 63, 311, 828, 1257
PspPI GGNCC 5 cut(s) 95, 310, 1037, 1088, 1139
PspPPI RGGWCCY 1 cut(s) 95
PstI CTGCAG 1 cut(s) 1012
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 4 cut(s) 922, 1018, 1069, 1255
RsaI GTAC 1 cut(s) 828
RsaNI GTAC 1 cut(s) 827
RseI CAYNNNNRTG 2 cut(s) 339, 734
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 4 cut(s) 228, 416, 848, 1105
Sau3AI GATC 9 cut(s) 331, 532, 732, 862, 922, 995, 1018, 1069, 1255
Sau96I GGNCC 5 cut(s) 95, 310, 1037, 1088, 1139
ScrFI CCNGG 2 cut(s) 162, 824
SfaNI GCATC 6 cut(s) 556, 670, 859, 920, 943, 965
SfcI CTRYAG 3 cut(s) 610, 890, 1008
Sfr274I CTCGAG 1 cut(s) 984
SinI GGWCC 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 984
SmiMI CAYNNNNRTG 2 cut(s) 339, 734
SmlI CTYRAG 3 cut(s) 536, 842, 984
SmoI CTYRAG 3 cut(s) 536, 842, 984
Sse9I AATT 9 cut(s) 17, 128, 277, 348, 388, 514, 563, 702, 1047
SsiI CCGC 1 cut(s) 228
SspI AATATT 1 cut(s) 898
SspMI CTAG 2 cut(s) 302, 1034
StyD4I CCNGG 2 cut(s) 160, 822
TaaI ACNGT 2 cut(s) 110, 1212
TaiI ACGT 1 cut(s) 745
TaqI TCGA 4 cut(s) 30, 531, 985, 1273
TasI AATT 9 cut(s) 17, 128, 277, 348, 388, 514, 563, 702, 1047
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 2 cut(s) 290, 1133
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 4 cut(s) 113, 427, 557, 813
TseI GCWGC 3 cut(s) 415, 847, 1104
TspDTI ATGAA 9 cut(s) 17, 90, 145, 575, 648, 687, 794, 890, 951
TspGWI ACGGA 2 cut(s) 140, 786
TspRI CASTG 4 cut(s) 113, 427, 557, 813
Van91I CCANNNNNTGG 1 cut(s) 1085
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 4 cut(s) 277, 388, 514, 563
XceI RCATGY 3 cut(s) 180, 596, 880
XhoI CTCGAG 1 cut(s) 984
XspI CTAG 2 cut(s) 302, 1034
Zsp2I ATGCAT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.