Rw1G009380

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004794
Physical Location & Seq
Reverse (-)
20616735 .. 20619650
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009380.1

Sequence Viewer

Length: 1779 bp
ATGATGCAGGAATTGTCAACCATCGATGACCTACCTGCGACTAATGTGGAACTGGAACCGGAAAAGATAGAAGATGGGAAAGATGGAGGTCCTTCATTCCACTGTAAACTTTACAGCACGGAATTAGTCCACAAGATAGCTCAGGTTTTCATTCCTGGATTAGCTACTGCATGTGTTGATAACACATCTGGTGATATCTTCAAGACCCCTGCTTCTGTGGCCGCCGATGTGCGAAGGGAAATGGTGGAGTATATCACTCAAAGAAGTGAGAATTTTGTTGCAGAATCTGTTATCCTAGAAGGGGGCCAGGATGGACAAGTATCTGATCATCCCTATGACATAATTTCTGATTGTGTTGATGACTTTGCAAGTTCCAAGAGAAATTTGTTTAGTCGGGTTTCGGGATGGCTGCTCAGTGAAAAGAGAGAAGATAAAATAGATGATTTTGTTCAAGAGATGGAAATAAATGGGTTTTGGTTGGTTGATAAAAGAGAAATAATAGCACAGAATTTGCTAAAGAATGTCGATCTTAAGAATGAGCATCACTGCAATATGAAATTTCACACCCCAGAGGAGCTTGAAGCGCATGTTCTAAAGTGTAGTTATAGGTCTATGAGTTGCATACATGAAGGATGTAATGCCATAATTTGTGCAAGTCAGGTGGATAAACATGATGCAGTTTGCCCCTTCAAGATAATTCCATGCGAACAAAACTGCTCCGACATGATCATGAGACGTGAAATGGACAGACATTGTATTACCATCTGTCCAATGAAACTTGTCAGTTGTCCGTTCTATGCAGTGGGTTGTCAATCCCCGGTACCACATTGTAAGCTTGAGCAGCATCGTTCAGATGATCTCCATTCTCACATGCTGTTTGTTCTACAAAATATTCATAAAGAAGCATCTATGGAAGATCTGAAAAGAAGGCTGGAGCAACTAAAAGACGCATCTTCATCCAATAACTTGGCACAAGCTCGAGATGTGAGATCACTAACCTCTGCAGTCAAGGAGCTTGAAGCAAAACTAGGGCCGATGGAAATTAGCAGAAACACCATGAGGATCTTGAAGCAGAACATGGGCCAGAGGAATAATAAACATGAGAAGGACTTTGAAGTAAAACCAGCACCAAAGGAAGTTAGCCAACAATCGGAGTATCTTGAAGCAAAATCAGAGCCAATGGAAGTTAGTACTAAATCTGTGGAGGATCTTGAAGCTAAACCGGCACCAAAGGAACTGATCACCAGACCTGCAGAGGATCTTGAAGCAAAACCAGCTCCAAAGGAAGTCAATAGTTCAAAAACCCCCAAAGATGTTGAAGAAAGGCCAGTGGGAGTGAGCGGTAAGGCTCCAACAGGACATGAAGCTAAACCAGCACCAAAGGAACTGAGCACCAAACCTGCAGAAGATCTGGGAGTGAGCAGTAAGGCCCCAACAAGACATGAAGAAAAATTAGGGACAAAGGAAGTGAGAAGCGAATTGCCAGAGGAGCTCGAAACAGAACTAGGAACAAAGGAAGTGGGAAGCAAACCACCAGAGGAACTTGAAACACAACTAGGAATCAAGGAAGTGAGCAGCAAACTTCATCAGGAACTTGAAACAAAACTAGGAAGAAAAGAGGTAGGCAGCAAAACCCCAGAAGGATACGAAAGACAATTAGTAACAAAGGATGTCAACAGCAAACCCGAGGAACTTAAAAAAGAACTAGGGACAAAGGAAGTGAGCAGCAAACCCCCAGAGGAACTCGAGAAATTAAGTGACAAAGGAAGTGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

592

Amino Acids

66.39

Weight (kDa)

5.32

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 224 - 282 6.5e-11 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 43, 1258, 1408
Acc65I GGTACC 1 cut(s) 820
AccB1I GGYRCC 2 cut(s) 820, 1225
AccBSI CCGCTC 1 cut(s) 1341
AciI CCGC 2 cut(s) 222, 1341
AclWI GGATC 3 cut(s) 1070, 1215, 1266
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 4 cut(s) 271, 382, 508, 557
AfaI GTAC 2 cut(s) 822, 1192
AfiI CCNNNNNNNGG 2 cut(s) 301, 1150
AflII CTTAAG 1 cut(s) 530
AjiI CACGTC 1 cut(s) 737
AjnI CCWGG 2 cut(s) 154, 306
Alw21I GWGCWC 2 cut(s) 1394, 1494
Alw26I GTCTC 1 cut(s) 727
AlwI GGATC 3 cut(s) 1070, 1215, 1266
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 3 cut(s) 978, 1685, 1745
AoxI GGCC 6 cut(s) 219, 304, 1031, 1081, 1325, 1428
ApeKI GCWGC 5 cut(s) 409, 841, 1575, 1626, 1725
ApoI RAATTY 4 cut(s) 271, 382, 508, 557
Asp718I GGTACC 1 cut(s) 820
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 5 cut(s) 89, 304, 1031, 1081, 1429
AsuC2I CCSGG 1 cut(s) 818
AsuHPI GGTGA 2 cut(s) 203, 1234
AvaI CYCGRG 3 cut(s) 978, 1685, 1745
AvaII GGWCC 1 cut(s) 89
BanI GGYRCC 2 cut(s) 820, 1225
BanII GRGCYC 1 cut(s) 1494
Bbv12I GWGCWC 2 cut(s) 1394, 1494
BbvI GCAGC 5 cut(s) 396, 853, 1587, 1638, 1737
BccI CCATC 8 cut(s) 29, 68, 77, 305, 399, 451, 770, 1030
BciT130I CCWGG 2 cut(s) 156, 308
BciVI GTATCC 1 cut(s) 1637
BclI TGATCA 3 cut(s) 325, 726, 1239
BcnI CCSGG 1 cut(s) 818
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 6 cut(s) 296, 1028, 1505, 1556, 1607, 1706
BfmI CTRYAG 3 cut(s) 1002, 1251, 1401
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 3 cut(s) 43, 1258, 1408
BfuI GTATCC 1 cut(s) 1637
BglII AGATCT 2 cut(s) 916, 1408
BisI GCNGC 6 cut(s) 222, 410, 842, 1576, 1627, 1726
BlsI GCNGC 6 cut(s) 223, 411, 843, 1577, 1628, 1727
BmcAI AGTACT 1 cut(s) 1192
Bme1390I CCNGG 3 cut(s) 156, 308, 818
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 3 cut(s) 978, 1685, 1745
BmgBI CACGTC 1 cut(s) 737
BmgT120I GGNCC 5 cut(s) 89, 304, 1031, 1081, 1429
BmiI GGNNCC 6 cut(s) 57, 305, 822, 1227, 1350, 1431
BmrFI CCNGG 3 cut(s) 156, 308, 818
BmsI GCATC 5 cut(s) 550, 664, 853, 914, 959
BpmI CTGGAG 1 cut(s) 953
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 818
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 816, 1686
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 1150
Bse118I RCCGGY 1 cut(s) 1222
Bse1I ACTGG 2 cut(s) 57, 1328
BseBI CCWGG 2 cut(s) 156, 308
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 816, 1686
BseGI GGATG 6 cut(s) 316, 328, 410, 638, 956, 1675
BseLI CCNNNNNNNGG 2 cut(s) 301, 1150
BseMII CTCAG 3 cut(s) 155, 427, 1379
BseNI ACTGG 2 cut(s) 57, 1328
BseRI GAGGAG 2 cut(s) 587, 1502
BseXI GCAGC 5 cut(s) 396, 853, 1587, 1638, 1737
BshFI GGCC 6 cut(s) 221, 306, 1033, 1083, 1327, 1430
BshNI GGYRCC 2 cut(s) 820, 1225
BshVI ATCGAT 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 1394, 1494
BsiHKCI CYCGRG 3 cut(s) 978, 1685, 1745
BsiSI CCGG 3 cut(s) 59, 818, 1223
BslFI GGGAC 2 cut(s) 1471, 1723
BslI CCNNNNNNNGG 2 cut(s) 301, 1150
BsmAI GTCTC 1 cut(s) 727
BsmBI CGTCTC 1 cut(s) 727
BsmFI GGGAC 2 cut(s) 1471, 1723
BsnI GGCC 6 cut(s) 221, 306, 1033, 1083, 1327, 1430
BsoBI CYCGRG 3 cut(s) 978, 1685, 1745
Bsp1286I GDGCHC 2 cut(s) 1394, 1494
BspACI CCGC 2 cut(s) 222, 1341
BspANI GGCC 6 cut(s) 221, 306, 1033, 1083, 1327, 1430
BspCNI CTCAG 3 cut(s) 154, 426, 1380
BspDI ATCGAT 1 cut(s) 24
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 6 cut(s) 57, 305, 822, 1227, 1350, 1431
BspMAI CTGCAG 3 cut(s) 1006, 1255, 1405
BspMI ACCTGC 3 cut(s) 43, 1258, 1408
BspPI GGATC 3 cut(s) 1070, 1215, 1266
BspT107I GGYRCC 2 cut(s) 820, 1225
BspTI CTTAAG 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 1341
BsrFI RCCGGY 1 cut(s) 1222
BsrI ACTGG 2 cut(s) 57, 1328
BssAI RCCGGY 1 cut(s) 1222
BssECI CCNNGG 2 cut(s) 816, 1686
Bst2UI CCWGG 2 cut(s) 156, 308
Bst4CI ACNGT 1 cut(s) 104
BstAFI CTTAAG 1 cut(s) 530
BstDEI CTNAG 3 cut(s) 141, 413, 1388
BstF5I GGATG 6 cut(s) 316, 328, 410, 638, 956, 1675
BstHHI GCGC 1 cut(s) 586
BstMAI GTCTC 1 cut(s) 727
BstMWI GCNNNNNNNGC 7 cut(s) 218, 583, 841, 1223, 1274, 1373, 1489
BstNI CCWGG 2 cut(s) 156, 308
BstNSI RCATGY 3 cut(s) 174, 590, 874
BstSCI CCNGG 3 cut(s) 154, 306, 816
BstSFI CTRYAG 3 cut(s) 1002, 1251, 1401
BstV1I GCAGC 5 cut(s) 396, 853, 1587, 1638, 1737
BstX2I RGATCY 5 cut(s) 916, 1062, 1207, 1258, 1408
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 5 cut(s) 916, 1062, 1207, 1258, 1408
Bsu15I ATCGAT 1 cut(s) 24
BsuI GTATCC 1 cut(s) 1637
BsuRI GGCC 6 cut(s) 221, 306, 1033, 1083, 1327, 1430
BsuTUI ATCGAT 1 cut(s) 24
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 6 cut(s) 316, 328, 410, 638, 956, 1675
BtsI GCAGTG 2 cut(s) 544, 807
BtsIMutI CAGTG 5 cut(s) 100, 421, 544, 807, 1335
BveI ACCTGC 3 cut(s) 43, 1258, 1408
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 1 cut(s) 729
CfoI GCGC 1 cut(s) 586
Cfr10I RCCGGY 1 cut(s) 1222
Cfr13I GGNCC 5 cut(s) 89, 304, 1031, 1081, 1429
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 956
Csp6I GTAC 2 cut(s) 821, 1191
CspCI CAANNNNNGTGG 4 cut(s) 642, 677, 1500, 1535
CviQI GTAC 2 cut(s) 821, 1191
DdeI CTNAG 3 cut(s) 141, 413, 1388
EaeI YGGCCR 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 1492
Eco24I GRGCYC 1 cut(s) 1494
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 1492
Eco88I CYCGRG 3 cut(s) 978, 1685, 1745
EcoICRI GAGCTC 1 cut(s) 1492
EcoO109I RGGNCCY 2 cut(s) 89, 1429
EcoRII CCWGG 2 cut(s) 154, 306
EcoRV GATATC 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 1494
Esp3I CGTCTC 1 cut(s) 727
FaqI GGGAC 2 cut(s) 1471, 1723
FbaI TGATCA 3 cut(s) 325, 726, 1239
Fnu4HI GCNGC 6 cut(s) 222, 410, 842, 1576, 1627, 1726
FokI GGATG 6 cut(s) 315, 323, 417, 645, 943, 1682
FriOI GRGCYC 1 cut(s) 1494
Fsp4HI GCNGC 6 cut(s) 222, 410, 842, 1576, 1627, 1726
FspBI CTAG 6 cut(s) 296, 1028, 1505, 1556, 1607, 1706
GlaI GCGC 1 cut(s) 585
GluI GCNGC 6 cut(s) 222, 410, 842, 1576, 1627, 1726
GsuI CTGGAG 1 cut(s) 953
HaeIII GGCC 6 cut(s) 221, 306, 1033, 1083, 1327, 1430
HapII CCGG 3 cut(s) 59, 818, 1223
HgaI GACGC 1 cut(s) 956
HhaI GCGC 1 cut(s) 586
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 2 cut(s) 18, 1675
HindII GTYRAC 2 cut(s) 18, 1675
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 2 cut(s) 284, 1560
HpaII CCGG 3 cut(s) 59, 818, 1223
HphI GGTGA 2 cut(s) 203, 1234
Hpy166II GTNNAC 4 cut(s) 18, 107, 130, 1675
Hpy188I TCNGA 7 cut(s) 325, 349, 721, 853, 921, 1153, 1174
Hpy8I GTNNAC 4 cut(s) 18, 107, 130, 1675
HpyAV CCTTC 8 cut(s) 102, 228, 293, 623, 697, 921, 1099, 1634
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 736
HpyF10VI GCNNNNNNNGC 7 cut(s) 218, 583, 841, 1223, 1274, 1373, 1489
HpyF3I CTNAG 3 cut(s) 141, 413, 1388
HpySE526I ACGT 1 cut(s) 736
HspAI GCGC 1 cut(s) 584
KpnI GGTACC 1 cut(s) 824
Ksp22I TGATCA 3 cut(s) 325, 726, 1239
LmnI GCTCC 7 cut(s) 574, 722, 934, 1012, 1282, 1354, 1489
Lsp1109I GCAGC 5 cut(s) 396, 853, 1587, 1638, 1737
LweI GCATC 5 cut(s) 550, 664, 853, 914, 959
MaeI CTAG 6 cut(s) 296, 1028, 1505, 1556, 1607, 1706
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 2 cut(s) 1660, 1757
MbiI CCGCTC 1 cut(s) 1341
MboII GAAGA 9 cut(s) 83, 190, 440, 926, 945, 1331, 1418, 1457, 1623
MflI RGATCY 5 cut(s) 916, 1062, 1207, 1258, 1408
MhlI GDGCHC 2 cut(s) 1394, 1494
MmeI TCCRAC 2 cut(s) 744, 1376
MseI TTAA 3 cut(s) 531, 1695, 1754
MslI CAYNNNNRTG 2 cut(s) 333, 728
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 3 cut(s) 59, 818, 1223
MspR9I CCNGG 3 cut(s) 156, 308, 818
MvaI CCWGG 2 cut(s) 156, 308
MwoI GCNNNNNNNGC 7 cut(s) 218, 583, 841, 1223, 1274, 1373, 1489
NciI CCSGG 1 cut(s) 818
NlaIV GGNNCC 6 cut(s) 57, 305, 822, 1227, 1350, 1431
NmuCI GTSAC 1 cut(s) 1757
NspI RCATGY 3 cut(s) 174, 590, 874
PaeR7I CTCGAG 2 cut(s) 978, 1745
PagI TCATGA 1 cut(s) 729
PfeI GAWTC 2 cut(s) 284, 1560
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 6 cut(s) 223, 411, 843, 1577, 1628, 1727
PpuMI RGGWCCY 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 1494
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 154, 306
PspGI CCWGG 2 cut(s) 154, 306
PspN4I GGNNCC 6 cut(s) 57, 305, 822, 1227, 1350, 1431
PspPI GGNCC 5 cut(s) 89, 304, 1031, 1081, 1429
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 3 cut(s) 1006, 1255, 1405
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 5 cut(s) 916, 1062, 1207, 1258, 1408
RsaI GTAC 2 cut(s) 822, 1192
RsaNI GTAC 2 cut(s) 821, 1191
RseI CAYNNNNRTG 2 cut(s) 333, 728
SacI GAGCTC 1 cut(s) 1494
SaqAI TTAA 3 cut(s) 531, 1695, 1754
SatI GCNGC 6 cut(s) 222, 410, 842, 1576, 1627, 1726
Sau96I GGNCC 5 cut(s) 89, 304, 1031, 1081, 1429
ScaI AGTACT 1 cut(s) 1192
ScrFI CCNGG 3 cut(s) 156, 308, 818
SduI GDGCHC 2 cut(s) 1394, 1494
SfaNI GCATC 5 cut(s) 550, 664, 853, 914, 959
SfcI CTRYAG 3 cut(s) 1002, 1251, 1401
Sfr274I CTCGAG 2 cut(s) 978, 1745
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 2 cut(s) 978, 1745
SmiMI CAYNNNNRTG 2 cut(s) 333, 728
SmlI CTYRAG 4 cut(s) 530, 836, 978, 1745
SmoI CTYRAG 4 cut(s) 530, 836, 978, 1745
SsiI CCGC 2 cut(s) 222, 1341
SspI AATATT 1 cut(s) 892
SspMI CTAG 6 cut(s) 296, 1028, 1505, 1556, 1607, 1706
SstI GAGCTC 1 cut(s) 1494
StyD4I CCNGG 3 cut(s) 154, 306, 816
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 739
TaqI TCGA 5 cut(s) 24, 525, 979, 1494, 1746
TatI WGTACW 1 cut(s) 1190
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 2 cut(s) 284, 1560
Tru1I TTAA 3 cut(s) 531, 1695, 1754
Tru9I TTAA 3 cut(s) 531, 1695, 1754
TscAI CASTG 5 cut(s) 107, 421, 551, 807, 1335
TseFI GTSAC 1 cut(s) 1757
TseI GCWGC 5 cut(s) 409, 841, 1575, 1626, 1725
Tsp45I GTSAC 1 cut(s) 1757
TspGWI ACGGA 2 cut(s) 134, 780
TspRI CASTG 5 cut(s) 107, 421, 551, 807, 1335
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 4 cut(s) 271, 382, 508, 557
XceI RCATGY 3 cut(s) 174, 590, 874
XhoI CTCGAG 2 cut(s) 978, 1745
XspI CTAG 6 cut(s) 296, 1028, 1505, 1556, 1607, 1706
ZrmI AGTACT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.