TRAF-type zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G11950 AT3G11950 AT3G11950 AT3G11950 AT3G11950 |
| fragaria_vesca | FvH4_7g05020 FvH4_7g05020 |
| malus_domestica | MD02G1263700.v1.1 MD07G1054500.v1.1 |
| prunus_persica | Prupe.2G061200_v2.0.a1 Prupe.2G061200_v2.0.a1 Prupe.2G061200_v2.0.a1 |
| pyrus_communis | pycom07g04230 |
| rosa_chinensis | RchiOBHm_Chr1g0331291 RchiOBHm_Chr1g0331341 |
| rosa_laevigata | RLG00000029742 |
| rosa_multiflora | Rmu_sc0005956.1_g000011 Rmu_sc0005956.1_g000015 Rmu_sc0011261.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00319230 |
| rosa_rugosa | Rorug01G0092700 |
| rosa_samantha | Rh1AG117200 Rh1AG117600 Rh1AG117700 Rh1BG088200 Rh1BG088400 Rh1CG112200 Rh1CG112500 Rh1DG121400 |
| rosa_wichuraiana | Rw1G009380 Rw1G009400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 142, 1438, 2842 |
| Acc65I | GGTACC | 1 cut(s) | 2215 |
| AccB1I | GGYRCC | 1 cut(s) | 2215 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1178, 1306 |
| AciI | CCGC | 3 cut(s) | 95, 321, 1617 |
| AclWI | GGATC | 5 cut(s) | 1170, 2415, 2598, 2799, 2826 |
| AcoI | YGGCCR | 3 cut(s) | 96, 318, 1614 |
| AcsI | RAATTY | 8 cut(s) | 370, 481, 607, 656, 1666, 1777, 1903, 1952 |
| AfaI | GTAC | 5 cut(s) | 921, 1331, 2217, 2565, 2776 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 400, 1178, 1306, 1696 |
| AflII | CTTAAG | 3 cut(s) | 629, 995, 1925 |
| AflIII | ACRYGT | 1 cut(s) | 1303 |
| AjiI | CACGTC | 2 cut(s) | 836, 2132 |
| AjnI | CCWGG | 2 cut(s) | 253, 1549 |
| Alw21I | GWGCWC | 1 cut(s) | 42 |
| Alw26I | GTCTC | 3 cut(s) | 50, 826, 2122 |
| AlwI | GGATC | 5 cut(s) | 1170, 2415, 2598, 2799, 2826 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 386, 1682 |
| Ama87I | CYCGRG | 2 cut(s) | 1077, 2373 |
| ApeKI | GCWGC | 8 cut(s) | 508, 940, 1197, 1804, 2236, 2493, 2625, 2826 |
| ApoI | RAATTY | 8 cut(s) | 370, 481, 607, 656, 1666, 1777, 1903, 1952 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2533, 2565, 2744, 2776 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 225, 1521 |
| Asp718I | GGTACC | 1 cut(s) | 2215 |
| AspLEI | GCGC | 2 cut(s) | 685, 1981 |
| AsuC2I | CCSGG | 1 cut(s) | 2213 |
| AsuHPI | GGTGA | 2 cut(s) | 302, 1598 |
| AvaI | CYCGRG | 2 cut(s) | 1077, 2373 |
| AvaII | GGWCC | 2 cut(s) | 188, 1484 |
| AxyI | CCTNAGG | 2 cut(s) | 1257, 2685 |
| BanI | GGYRCC | 1 cut(s) | 2215 |
| BanII | GRGCYC | 1 cut(s) | 42 |
| Bbv12I | GWGCWC | 1 cut(s) | 42 |
| BbvI | GCAGC | 8 cut(s) | 495, 952, 1209, 1791, 2248, 2505, 2637, 2838 |
| BciT130I | CCWGG | 2 cut(s) | 255, 1551 |
| BclI | TGATCA | 4 cut(s) | 424, 825, 1720, 2121 |
| BcnI | CCSGG | 1 cut(s) | 2213 |
| BcoDI | GTCTC | 3 cut(s) | 50, 826, 2122 |
| BfaI | CTAG | 4 cut(s) | 395, 1127, 1691, 2423 |
| BfmI | CTRYAG | 6 cut(s) | 703, 1101, 1999, 2279, 2397, 2835 |
| BfrI | CTTAAG | 3 cut(s) | 629, 995, 1925 |
| BfuAI | ACCTGC | 3 cut(s) | 142, 1438, 2842 |
| BglII | AGATCT | 3 cut(s) | 1015, 2311, 2842 |
| BmcAI | AGTACT | 2 cut(s) | 2565, 2776 |
| Bme1390I | CCNGG | 3 cut(s) | 255, 1551, 2213 |
| Bme18I | GGWCC | 2 cut(s) | 188, 1484 |
| BmeT110I | CYCGRG | 2 cut(s) | 1077, 2373 |
| BmgBI | CACGTC | 2 cut(s) | 836, 2132 |
| BmiI | GGNNCC | 5 cut(s) | 156, 404, 1452, 1700, 2217 |
| BmrFI | CCNGG | 3 cut(s) | 255, 1551, 2213 |
| BmrI | ACTGGG | 1 cut(s) | 911 |
| BmuI | ACTGGG | 1 cut(s) | 911 |
| BpmI | CTGGAG | 6 cut(s) | 41, 1052, 1197, 2348, 2493, 2625 |
| BpuEI | CTTGAG | 2 cut(s) | 956, 2252 |
| BpuMI | CCSGG | 1 cut(s) | 2213 |
| Bsa29I | ATCGAT | 1 cut(s) | 123 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2589 |
| BsaI | GGTCTC | 1 cut(s) | 50 |
| BsaJI | CCNNGG | 1 cut(s) | 2211 |
| BsaWI | WCCGGW | 2 cut(s) | 157, 1453 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 400, 1178, 1306, 1696 |
| Bse1I | ACTGG | 5 cut(s) | 24, 156, 917, 1452, 2912 |
| Bse21I | CCTNAGG | 2 cut(s) | 1257, 2685 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2589 |
| BseBI | CCWGG | 2 cut(s) | 255, 1551 |
| BseCI | ATCGAT | 1 cut(s) | 123 |
| BseDI | CCNNGG | 1 cut(s) | 2211 |
| BseJI | GATNNNNATC | 1 cut(s) | 2589 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 400, 1178, 1306, 1696 |
| BseMII | CTCAG | 5 cut(s) | 526, 1248, 1822, 2676, 2813 |
| BseNI | ACTGG | 5 cut(s) | 24, 156, 917, 1452, 2912 |
| BseRI | GAGGAG | 6 cut(s) | 92, 686, 1274, 1982, 2593, 2702 |
| BseX3I | CGGCCG | 1 cut(s) | 96 |
| BseXI | GCAGC | 8 cut(s) | 495, 952, 1209, 1791, 2248, 2505, 2637, 2838 |
| Bsh1285I | CGRYCG | 1 cut(s) | 99 |
| BshNI | GGYRCC | 1 cut(s) | 2215 |
| BshVI | ATCGAT | 1 cut(s) | 123 |
| BsiEI | CGRYCG | 1 cut(s) | 99 |
| BsiHKAI | GWGCWC | 1 cut(s) | 42 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1077, 2373 |
| BsiSI | CCGG | 3 cut(s) | 158, 1454, 2213 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 400, 1178, 1306, 1696 |
| BsmAI | GTCTC | 3 cut(s) | 50, 826, 2122 |
| BsmBI | CGTCTC | 2 cut(s) | 826, 2122 |
| Bso31I | GGTCTC | 1 cut(s) | 50 |
| BsoBI | CYCGRG | 2 cut(s) | 1077, 2373 |
| Bsp1286I | GDGCHC | 1 cut(s) | 42 |
| Bsp1407I | TGTACA | 1 cut(s) | 1329 |
| BspACI | CCGC | 3 cut(s) | 95, 321, 1617 |
| BspCNI | CTCAG | 5 cut(s) | 525, 1249, 1821, 2677, 2814 |
| BspDI | ATCGAT | 1 cut(s) | 123 |
| BspHI | TCATGA | 3 cut(s) | 828, 2124, 2593 |
| BspLI | GGNNCC | 5 cut(s) | 156, 404, 1452, 1700, 2217 |
| BspMAI | CTGCAG | 3 cut(s) | 1105, 2401, 2839 |
| BspMI | ACCTGC | 3 cut(s) | 142, 1438, 2842 |
| BspPI | GGATC | 5 cut(s) | 1170, 2415, 2598, 2799, 2826 |
| BspT107I | GGYRCC | 1 cut(s) | 2215 |
| BspTI | CTTAAG | 3 cut(s) | 629, 995, 1925 |
| BspTNI | GGTCTC | 1 cut(s) | 50 |
| BsrGI | TGTACA | 1 cut(s) | 1329 |
| BsrI | ACTGG | 5 cut(s) | 24, 156, 917, 1452, 2912 |
| BssECI | CCNNGG | 1 cut(s) | 2211 |
| Bst2UI | CCWGG | 2 cut(s) | 255, 1551 |
| Bst4CI | ACNGT | 2 cut(s) | 203, 1499 |
| BstAFI | CTTAAG | 3 cut(s) | 629, 995, 1925 |
| BstAUI | TGTACA | 1 cut(s) | 1329 |
| BstDEI | CTNAG | 7 cut(s) | 512, 1066, 1257, 1808, 2362, 2685, 2822 |
| BstHHI | GCGC | 2 cut(s) | 685, 1981 |
| BstMAI | GTCTC | 3 cut(s) | 50, 826, 2122 |
| BstMCI | CGRYCG | 1 cut(s) | 99 |
| BstNI | CCWGG | 2 cut(s) | 255, 1551 |
| BstNSI | RCATGY | 7 cut(s) | 273, 689, 973, 1307, 1569, 1985, 2269 |
| BstSCI | CCNGG | 3 cut(s) | 253, 1549, 2211 |
| BstSFI | CTRYAG | 6 cut(s) | 703, 1101, 1999, 2279, 2397, 2835 |
| BstV1I | GCAGC | 8 cut(s) | 495, 952, 1209, 1791, 2248, 2505, 2637, 2838 |
| BstX2I | RGATCY | 8 cut(s) | 5, 1015, 1162, 2311, 2407, 2791, 2818, 2842 |
| BstYI | RGATCY | 8 cut(s) | 5, 1015, 1162, 2311, 2407, 2791, 2818, 2842 |
| BstZI | CGGCCG | 1 cut(s) | 96 |
| Bsu15I | ATCGAT | 1 cut(s) | 123 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1257, 2685 |
| BsuTUI | ATCGAT | 1 cut(s) | 123 |
| BtgZI | GCGATG | 1 cut(s) | 2598 |
| BtrI | CACGTC | 2 cut(s) | 836, 2132 |
| BtsI | GCAGTG | 3 cut(s) | 643, 1939, 2202 |
| BtsIMutI | CAGTG | 8 cut(s) | 199, 520, 643, 1495, 1816, 1939, 2202, 2919 |
| BveI | ACCTGC | 3 cut(s) | 142, 1438, 2842 |
| CaiI | CAGNNNCTG | 2 cut(s) | 386, 1682 |
| CciI | TCATGA | 3 cut(s) | 828, 2124, 2593 |
| CfoI | GCGC | 2 cut(s) | 685, 1981 |
| ClaI | ATCGAT | 1 cut(s) | 123 |
| CseI | GACGC | 2 cut(s) | 1055, 2351 |
| Csp6I | GTAC | 5 cut(s) | 920, 1330, 2216, 2564, 2775 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 741, 776, 2037, 2072, 2895, 2930 |
| CviQI | GTAC | 5 cut(s) | 920, 1330, 2216, 2564, 2775 |
| DdeI | CTNAG | 7 cut(s) | 512, 1066, 1257, 1808, 2362, 2685, 2822 |
| EaeI | YGGCCR | 3 cut(s) | 96, 318, 1614 |
| EagI | CGGCCG | 1 cut(s) | 96 |
| Ecl136II | GAGCTC | 1 cut(s) | 40 |
| EclXI | CGGCCG | 1 cut(s) | 96 |
| Eco24I | GRGCYC | 1 cut(s) | 42 |
| Eco31I | GGTCTC | 1 cut(s) | 50 |
| Eco32I | GATATC | 2 cut(s) | 295, 1591 |
| Eco47I | GGWCC | 2 cut(s) | 188, 1484 |
| Eco52I | CGGCCG | 1 cut(s) | 96 |
| Eco53kI | GAGCTC | 1 cut(s) | 40 |
| Eco81I | CCTNAGG | 2 cut(s) | 1257, 2685 |
| Eco88I | CYCGRG | 2 cut(s) | 1077, 2373 |
| EcoICRI | GAGCTC | 1 cut(s) | 40 |
| EcoO109I | RGGNCCY | 2 cut(s) | 188, 1484 |
| EcoRII | CCWGG | 2 cut(s) | 253, 1549 |
| EcoRV | GATATC | 2 cut(s) | 295, 1591 |
| EcoT38I | GRGCYC | 1 cut(s) | 42 |
| Esp3I | CGTCTC | 2 cut(s) | 826, 2122 |
| FbaI | TGATCA | 4 cut(s) | 424, 825, 1720, 2121 |
| FriOI | GRGCYC | 1 cut(s) | 42 |
| FspBI | CTAG | 4 cut(s) | 395, 1127, 1691, 2423 |
| GlaI | GCGC | 2 cut(s) | 684, 1980 |
| GsuI | CTGGAG | 6 cut(s) | 41, 1052, 1197, 2348, 2493, 2625 |
| HapII | CCGG | 3 cut(s) | 158, 1454, 2213 |
| HgaI | GACGC | 2 cut(s) | 1055, 2351 |
| HhaI | GCGC | 2 cut(s) | 685, 1981 |
| Hin6I | GCGC | 2 cut(s) | 683, 1979 |
| HinP1I | GCGC | 2 cut(s) | 683, 1979 |
| HincII | GTYRAC | 2 cut(s) | 117, 1413 |
| HindII | GTYRAC | 2 cut(s) | 117, 1413 |
| HindIII | AAGCTT | 4 cut(s) | 875, 932, 2171, 2228 |
| HinfI | GANTC | 6 cut(s) | 383, 1226, 1679, 2522, 2548, 2759 |
| HpaII | CCGG | 3 cut(s) | 158, 1454, 2213 |
| HphI | GGTGA | 2 cut(s) | 302, 1598 |
| Hpy166II | GTNNAC | 5 cut(s) | 117, 206, 806, 1413, 1502 |
| Hpy8I | GTNNAC | 5 cut(s) | 117, 206, 806, 1413, 1502 |
| Hpy99I | CGWCG | 1 cut(s) | 58 |
| HpyCH4III | ACNGT | 2 cut(s) | 203, 1499 |
| HpyCH4IV | ACGT | 2 cut(s) | 835, 2131 |
| HpyF3I | CTNAG | 7 cut(s) | 512, 1066, 1257, 1808, 2362, 2685, 2822 |
| HpySE526I | ACGT | 2 cut(s) | 835, 2131 |
| HspAI | GCGC | 2 cut(s) | 683, 1979 |
| KpnI | GGTACC | 1 cut(s) | 2219 |
| Ksp22I | TGATCA | 4 cut(s) | 424, 825, 1720, 2121 |
| LmnI | GCTCC | 8 cut(s) | 673, 821, 1033, 1969, 2117, 2329, 2580, 2866 |
| Lsp1109I | GCAGC | 8 cut(s) | 495, 952, 1209, 1791, 2248, 2505, 2637, 2838 |
| MaeI | CTAG | 4 cut(s) | 395, 1127, 1691, 2423 |
| MaeII | ACGT | 2 cut(s) | 835, 2131 |
| MflI | RGATCY | 8 cut(s) | 5, 1015, 1162, 2311, 2407, 2791, 2818, 2842 |
| MhlI | GDGCHC | 1 cut(s) | 42 |
| MlyI | GAGTC | 2 cut(s) | 2557, 2768 |
| MmeI | TCCRAC | 2 cut(s) | 843, 2139 |
| MroXI | GAANNNNTTC | 2 cut(s) | 225, 1521 |
| MseI | TTAA | 4 cut(s) | 630, 996, 1376, 1926 |
| MslI | CAYNNNNRTG | 4 cut(s) | 432, 827, 1728, 2123 |
| MspCI | CTTAAG | 3 cut(s) | 629, 995, 1925 |
| MspI | CCGG | 3 cut(s) | 158, 1454, 2213 |
| MspR9I | CCNGG | 3 cut(s) | 255, 1551, 2213 |
| MvaI | CCWGG | 2 cut(s) | 255, 1551 |
| NciI | CCSGG | 1 cut(s) | 2213 |
| NlaIV | GGNNCC | 5 cut(s) | 156, 404, 1452, 1700, 2217 |
| NspI | RCATGY | 7 cut(s) | 273, 689, 973, 1307, 1569, 1985, 2269 |
| PaeR7I | CTCGAG | 2 cut(s) | 1077, 2373 |
| PagI | TCATGA | 3 cut(s) | 828, 2124, 2593 |
| PciI | ACATGT | 1 cut(s) | 1303 |
| PdmI | GAANNNNTTC | 2 cut(s) | 225, 1521 |
| PfeI | GAWTC | 4 cut(s) | 383, 1226, 1679, 2522 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1178, 1306 |
| PfoI | TCCNGGA | 2 cut(s) | 253, 1549 |
| PleI | GAGTC | 2 cut(s) | 2556, 2767 |
| PpsI | GAGTC | 2 cut(s) | 2556, 2767 |
| PpuMI | RGGWCCY | 2 cut(s) | 188, 1484 |
| PscI | ACATGT | 1 cut(s) | 1303 |
| Psp124BI | GAGCTC | 1 cut(s) | 42 |
| Psp5II | RGGWCCY | 2 cut(s) | 188, 1484 |
| Psp6I | CCWGG | 2 cut(s) | 253, 1549 |
| PspGI | CCWGG | 2 cut(s) | 253, 1549 |
| PspN4I | GGNNCC | 5 cut(s) | 156, 404, 1452, 1700, 2217 |
| PspPPI | RGGWCCY | 2 cut(s) | 188, 1484 |
| PstI | CTGCAG | 3 cut(s) | 1105, 2401, 2839 |
| PstNI | CAGNNNCTG | 2 cut(s) | 386, 1682 |
| PsuI | RGATCY | 8 cut(s) | 5, 1015, 1162, 2311, 2407, 2791, 2818, 2842 |
| RsaI | GTAC | 5 cut(s) | 921, 1331, 2217, 2565, 2776 |
| RsaNI | GTAC | 5 cut(s) | 920, 1330, 2216, 2564, 2775 |
| RseI | CAYNNNNRTG | 4 cut(s) | 432, 827, 1728, 2123 |
| SacI | GAGCTC | 1 cut(s) | 42 |
| SaqAI | TTAA | 4 cut(s) | 630, 996, 1376, 1926 |
| ScaI | AGTACT | 2 cut(s) | 2565, 2776 |
| SchI | GAGTC | 2 cut(s) | 2557, 2768 |
| ScrFI | CCNGG | 3 cut(s) | 255, 1551, 2213 |
| SduI | GDGCHC | 1 cut(s) | 42 |
| SfcI | CTRYAG | 6 cut(s) | 703, 1101, 1999, 2279, 2397, 2835 |
| Sfr274I | CTCGAG | 2 cut(s) | 1077, 2373 |
| SinI | GGWCC | 2 cut(s) | 188, 1484 |
| SlaI | CTCGAG | 2 cut(s) | 1077, 2373 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 432, 827, 1728, 2123 |
| SmlI | CTYRAG | 7 cut(s) | 629, 935, 995, 1077, 1925, 2231, 2373 |
| SmoI | CTYRAG | 7 cut(s) | 629, 935, 995, 1077, 1925, 2231, 2373 |
| SsiI | CCGC | 3 cut(s) | 95, 321, 1617 |
| SspMI | CTAG | 4 cut(s) | 395, 1127, 1691, 2423 |
| SstI | GAGCTC | 1 cut(s) | 42 |
| StyD4I | CCNGG | 3 cut(s) | 253, 1549, 2211 |
| TaaI | ACNGT | 2 cut(s) | 203, 1499 |
| TaiI | ACGT | 2 cut(s) | 838, 2134 |
| TaqI | TCGA | 4 cut(s) | 123, 624, 1078, 2374 |
| TaqII | GACCGA | 1 cut(s) | 32 |
| TatI | WGTACW | 3 cut(s) | 1329, 2563, 2774 |
| TauI | GCSGC | 3 cut(s) | 98, 323, 1619 |
| TfiI | GAWTC | 4 cut(s) | 383, 1226, 1679, 2522 |
| Tru1I | TTAA | 4 cut(s) | 630, 996, 1376, 1926 |
| Tru9I | TTAA | 4 cut(s) | 630, 996, 1376, 1926 |
| TscAI | CASTG | 8 cut(s) | 206, 520, 650, 1502, 1816, 1946, 2202, 2919 |
| TseI | GCWGC | 8 cut(s) | 508, 940, 1197, 1804, 2236, 2493, 2625, 2826 |
| TspGWI | ACGGA | 5 cut(s) | 122, 233, 879, 1529, 2175 |
| TspRI | CASTG | 8 cut(s) | 206, 520, 650, 1502, 1816, 1946, 2202, 2919 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1178, 1306 |
| Vha464I | CTTAAG | 3 cut(s) | 629, 995, 1925 |
| VpaK11BI | GGWCC | 2 cut(s) | 188, 1484 |
| XapI | RAATTY | 8 cut(s) | 370, 481, 607, 656, 1666, 1777, 1903, 1952 |
| XceI | RCATGY | 7 cut(s) | 273, 689, 973, 1307, 1569, 1985, 2269 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 16, 1387 |
| XhoI | CTCGAG | 2 cut(s) | 1077, 2373 |
| XmnI | GAANNNNTTC | 2 cut(s) | 225, 1521 |
| XspI | CTAG | 4 cut(s) | 395, 1127, 1691, 2423 |
| ZrmI | AGTACT | 2 cut(s) | 2565, 2776 |