Rroxscaffold_4G00319230

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004794
Physical Location & Seq
Forward (+)
46789898 .. 46793982
4085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319230.1

Sequence Viewer

Length: 1995 bp
ATGATGCAGGAATTGTCAACCATCGATGACCTACCTGCAACTAATGTGGAACTGGAACCAGAAAAGATAGAAGATGGGAAAGATGGAGGTCCTTCATTCCACTGTAAACTTTACAACGCGGAATTAGTCCACAAGATAGCTCAAGTTTTCATTCCTGGATTAGCTACTGCGTGTGTTGATAACACATCTGGTGATATCTTCAAGACCCCTGCTTCTGTGGCCGCCGATGTGAGAAAGGAAATGGTGGAGTATATCACTCAAAGAAGTGAGAATTTTGTTGCAGAATCTGTTATCCTAGAAGGGGGCCAAGATGGACAAGTATCTGATCATCCCTATGACATAATTTCTGATTTTGTTGATGACTTTGCAAGTTCCAAGAGAAATTTGTTTAGTCGGGTTTCGGGATGGCTGCTCAGTGAAAAGAGAGAAGATAAAATAGATGATTTTGTTCAAGAGATGGAAATAAATGGGTTTTGGTTGGTTGATAAAAGAGAAACAATAGCACAGAATTTGCTAAAGAATGTCGACCTTAAGAATGAGCATCACTGCAATATGAAATTTCACACCCCAGAGGAGCTTGAAGCGCATGTTCTAAAGTGTAGCTATAGGTCTATGAGTTGCATACATGAAGGATGTAATGCCATATTTTGTGCAAGTCAGGTGGATAAACATGATGCAGTTTGCCCCTTCAAGATAATTCCATGCGAACAAAACTGCTCCGACATGATCATGAGACGTGAAATGGACAGACATTGTATTACCATCTGTCCAATGAAGCTTGTTAGTTGTCCGTTCTATGCAGTGGGTTGTCAATCCCCGGTACCACATTGTAAGCTTGAGCAGCATCGTTCAGATGATCTCCAATCTCACATGCTGTTTGTTCTACAAAGTATTCATAAGGAAGCATCTATGGAAGATCTGAAAAGAAGGCTGGAGCAACTAGAAGACGCATCTTCATCCAATAACTTAGCACAAGCTCGAGATGTGAGATCACTAACCTCTGCAGTCAAGGATCTTGAAGCAAAACTAGGGCCGATGGAAATTAGCAGGAAACACCATGAGGATCTTGAAGCAGAACATGGGCCAGAGGAAGTACGCAGCAAAAGCAAAACTCCAGAGGATGTGGAATCAGGGCCAAAAGAAGTGAGTAATAAACCTGAGGAGGACTTTGAAGTAAAACCAGCACCAAAGGAAGTTAGCCAACAATCAGAGTATCTTGAAGCAAAATCAGAGCCAAAGGAAGTTAGTACTAAATCTGTGGAGGATCTTGAAGCTAAACCAGCACCAAAGGAACTGAGCAGCAAACCTGCAGAAGATCTTGAACCAAAACCAGCTCCAAAGGAAGTCAGTAGTTCAAAAATTCTCAGAGATGTTGAAGCAAGGCCCGTGGGAGTGAGCAGTAAGGCCCCAACAGGACATGAAGCTAAACCAGCACCAAAGGAACTGAGCGCTAAACCTGCAGAAGATTGTGAAGCAAAACCATCTCCGAAAGAAGTCAGTAGTTCAAAACCCCCTGAAGATGTTGAAGCAAGGCCAGTGGGAGTGAGCAGTAAGGCCCCAACAGGACATGAAGCTAAACCAGCACCAAAGGAACTGAGCGCCAAACCTTCAGAAGATCTTGAAGCAAAACCAGCTCTGAAGGAAGTCAGTAGTTCAAAACCCCCCGAAGATGTTGAAGCAAAAACAGTGGGAGTGAGCGGTAAGGCCCCAACAGGACATGAAGAAAAATTAGGGGCAAAAGAACTGAGCACCAAACCTGCAGAAGATCGTGAAGCAAAAGTAGCTCCGGAGGAAGTCAGTAGTTCAAAAACCCCCAAAGATGTTGAAGCAAAGCCAGTGGGAGTGAGCAGTAAGGCCCTAATCGGACATGAAGCTAAACCAGCAACAAAGGAACTGAGCACCAAACCTGTGGAAGATCGTGAAGCAAAACCAGCTCTGAAGGAAGTCAGGAGTTCAAAACCCCCGGAGATGTTGAATCAAGGACAGTGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

664

Amino Acids

73.12

Weight (kDa)

5.24

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 224 - 282 7.5e-11 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 43, 1315, 1465, 1765
Acc65I GGTACC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 820
AccBSI CCGCTC 1 cut(s) 1698
AccI GTMKAC 1 cut(s) 525
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 1786
AciI CCGC 3 cut(s) 119, 222, 1698
AclWI GGATC 3 cut(s) 1020, 1071, 1272
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 5 cut(s) 271, 382, 508, 557, 1359
AcuI CTGAAG 4 cut(s) 1536, 1593, 1658, 1958
AfaI GTAC 3 cut(s) 822, 1095, 1249
AfeI AGCGCT 1 cut(s) 1450
AfiI CCNNNNNNNGG 1 cut(s) 301
AflII CTTAAG 1 cut(s) 530
AjiI CACGTC 1 cut(s) 737
AjnI CCWGG 1 cut(s) 154
Alw21I GWGCWC 2 cut(s) 1751, 1901
Alw26I GTCTC 1 cut(s) 727
AlwI GGATC 3 cut(s) 1020, 1071, 1272
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 978
Aor13HI TCCGGA 1 cut(s) 1786
Aor51HI AGCGCT 1 cut(s) 1450
ApeKI GCWGC 4 cut(s) 409, 841, 1098, 1299
ApoI RAATTY 5 cut(s) 271, 382, 508, 557, 1359
Asp718I GGTACC 1 cut(s) 820
AspLEI GCGC 3 cut(s) 586, 1451, 1601
AsuC2I CCSGG 2 cut(s) 818, 1964
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 978
AvaII GGWCC 1 cut(s) 89
AxyI CCTNAGG 1 cut(s) 1158
BanI GGYRCC 1 cut(s) 820
BbsI GAAGAC 1 cut(s) 951
Bbv12I GWGCWC 2 cut(s) 1751, 1901
BbvI GCAGC 4 cut(s) 396, 853, 1110, 1311
BccI CCATC 9 cut(s) 29, 68, 77, 305, 399, 451, 770, 1030, 1489
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 2 cut(s) 325, 726
BcnI CCSGG 2 cut(s) 818, 1964
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 3 cut(s) 296, 941, 1028
BfmI CTRYAG 5 cut(s) 604, 1002, 1308, 1458, 1758
BfoI RGCGCY 2 cut(s) 1452, 1602
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 4 cut(s) 43, 1315, 1465, 1765
BglII AGATCT 3 cut(s) 916, 1315, 1615
BisI GCNGC 5 cut(s) 222, 410, 842, 1099, 1300
BlsI GCNGC 5 cut(s) 223, 411, 843, 1100, 1301
BmcAI AGTACT 1 cut(s) 1249
Bme1390I CCNGG 3 cut(s) 156, 818, 1964
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 978
BmgBI CACGTC 1 cut(s) 737
BmiI GGNNCC 6 cut(s) 57, 305, 822, 1407, 1557, 1707
BmrFI CCNGG 3 cut(s) 156, 818, 1964
BmsI GCATC 5 cut(s) 550, 664, 853, 914, 959
BpiI GAAGAC 1 cut(s) 951
BpmI CTGGAG 2 cut(s) 953, 1098
BpuEI CTTGAG 2 cut(s) 126, 857
BpuMI CCSGG 2 cut(s) 818, 1964
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 816, 1386, 1962
BsaWI WCCGGW 1 cut(s) 1786
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 3 cut(s) 57, 1535, 1835
Bse21I CCTNAGG 1 cut(s) 1158
BseAI TCCGGA 1 cut(s) 1786
BseBI CCWGG 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 816, 1386, 1962
BseGI GGATG 5 cut(s) 328, 410, 638, 956, 1126
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 8 cut(s) 427, 1149, 1286, 1378, 1436, 1586, 1736, 1886
BseNI ACTGG 3 cut(s) 57, 1535, 1835
BseRI GAGGAG 2 cut(s) 587, 1175
BseXI GCAGC 4 cut(s) 396, 853, 1110, 1311
Bsh1236I CGCG 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 820
BshVI ATCGAT 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 1751, 1901
BsiHKCI CYCGRG 1 cut(s) 978
BsiSI CCGG 3 cut(s) 818, 1787, 1964
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 727
BsmBI CGTCTC 1 cut(s) 727
BsoBI CYCGRG 1 cut(s) 978
Bsp1286I GDGCHC 2 cut(s) 1751, 1901
Bsp13I TCCGGA 1 cut(s) 1786
BspACI CCGC 3 cut(s) 119, 222, 1698
BspCNI CTCAG 8 cut(s) 426, 1150, 1287, 1377, 1437, 1587, 1737, 1887
BspDI ATCGAT 1 cut(s) 24
BspEI TCCGGA 1 cut(s) 1786
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 6 cut(s) 57, 305, 822, 1407, 1557, 1707
BspMAI CTGCAG 4 cut(s) 1006, 1312, 1462, 1762
BspMI ACCTGC 4 cut(s) 43, 1315, 1465, 1765
BspPI GGATC 3 cut(s) 1020, 1071, 1272
BspT107I GGYRCC 1 cut(s) 820
BspTI CTTAAG 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 1698
BsrI ACTGG 3 cut(s) 57, 1535, 1835
BssECI CCNNGG 3 cut(s) 816, 1386, 1962
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 3 cut(s) 104, 1687, 1986
BstAFI CTTAAG 1 cut(s) 530
BstDEI CTNAG 9 cut(s) 413, 967, 1158, 1295, 1364, 1445, 1595, 1745, 1895
BstDSI CCRYGG 1 cut(s) 1386
BstF5I GGATG 5 cut(s) 328, 410, 638, 956, 1126
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 2 cut(s) 1452, 1602
BstHHI GCGC 3 cut(s) 586, 1451, 1601
BstMAI GTCTC 1 cut(s) 727
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 2 cut(s) 590, 874
BstSCI CCNGG 3 cut(s) 154, 816, 1962
BstSFI CTRYAG 5 cut(s) 604, 1002, 1308, 1458, 1758
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 4 cut(s) 396, 853, 1110, 1311
BstV2I GAAGAC 1 cut(s) 951
BstX2I RGATCY 6 cut(s) 916, 1012, 1063, 1264, 1315, 1615
BstXI CCANNNNNNTGG 1 cut(s) 1909
BstYI RGATCY 6 cut(s) 916, 1012, 1063, 1264, 1315, 1615
Bsu15I ATCGAT 1 cut(s) 24
Bsu36I CCTNAGG 1 cut(s) 1158
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 1386
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 5 cut(s) 328, 410, 638, 956, 1126
BtsI GCAGTG 2 cut(s) 544, 807
BtsIMutI CAGTG 8 cut(s) 100, 421, 544, 807, 1542, 1692, 1842, 1991
BveI ACCTGC 4 cut(s) 43, 1315, 1465, 1765
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 1 cut(s) 729
CfoI GCGC 3 cut(s) 586, 1451, 1601
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 956
Csp6I GTAC 3 cut(s) 821, 1094, 1248
CviQI GTAC 3 cut(s) 821, 1094, 1248
DdeI CTNAG 9 cut(s) 413, 967, 1158, 1295, 1364, 1445, 1595, 1745, 1895
EaeI YGGCCR 1 cut(s) 219
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 89
Eco47III AGCGCT 1 cut(s) 1450
Eco57I CTGAAG 4 cut(s) 1536, 1593, 1658, 1958
Eco81I CCTNAGG 1 cut(s) 1158
Eco88I CYCGRG 1 cut(s) 978
EcoO109I RGGNCCY 5 cut(s) 89, 1405, 1555, 1705, 1855
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 727
FbaI TGATCA 2 cut(s) 325, 726
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 5 cut(s) 222, 410, 842, 1099, 1300
FokI GGATG 5 cut(s) 315, 417, 645, 943, 1133
Fsp4HI GCNGC 5 cut(s) 222, 410, 842, 1099, 1300
FspBI CTAG 3 cut(s) 296, 941, 1028
GlaI GCGC 3 cut(s) 585, 1450, 1600
GluI GCNGC 5 cut(s) 222, 410, 842, 1099, 1300
GsuI CTGGAG 2 cut(s) 953, 1098
HaeII RGCGCY 2 cut(s) 1452, 1602
HapII CCGG 3 cut(s) 818, 1787, 1964
HgaI GACGC 1 cut(s) 956
HhaI GCGC 3 cut(s) 586, 1451, 1601
Hin6I GCGC 3 cut(s) 584, 1449, 1599
HinP1I GCGC 3 cut(s) 584, 1449, 1599
HincII GTYRAC 2 cut(s) 18, 526
HindII GTYRAC 2 cut(s) 18, 526
HindIII AAGCTT 2 cut(s) 776, 833
HinfI GANTC 3 cut(s) 284, 1127, 1975
HpaII CCGG 3 cut(s) 818, 1787, 1964
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 4 cut(s) 18, 107, 130, 526
Hpy8I GTNNAC 4 cut(s) 18, 107, 130, 526
HpyAV CCTTC 8 cut(s) 102, 293, 623, 697, 921, 1617, 1633, 1933
HpyCH4III ACNGT 3 cut(s) 104, 1687, 1986
HpyCH4IV ACGT 1 cut(s) 736
HpyF3I CTNAG 9 cut(s) 413, 967, 1158, 1295, 1364, 1445, 1595, 1745, 1895
HpySE526I ACGT 1 cut(s) 736
HspAI GCGC 3 cut(s) 584, 1449, 1599
Kpn2I TCCGGA 1 cut(s) 1786
KpnI GGTACC 1 cut(s) 824
Ksp22I TGATCA 2 cut(s) 325, 726
LmnI GCTCC 5 cut(s) 574, 722, 934, 1339, 1789
Lsp1109I GCAGC 4 cut(s) 396, 853, 1110, 1311
LweI GCATC 5 cut(s) 550, 664, 853, 914, 959
MaeI CTAG 3 cut(s) 296, 941, 1028
MaeII ACGT 1 cut(s) 736
MbiI CCGCTC 1 cut(s) 1698
MflI RGATCY 6 cut(s) 916, 1012, 1063, 1264, 1315, 1615
MhlI GDGCHC 2 cut(s) 1751, 1901
MmeI TCCRAC 1 cut(s) 744
MroI TCCGGA 1 cut(s) 1786
MseI TTAA 1 cut(s) 531
MslI CAYNNNNRTG 2 cut(s) 333, 728
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 3 cut(s) 818, 1787, 1964
MspR9I CCNGG 3 cut(s) 156, 818, 1964
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 119
NciI CCSGG 2 cut(s) 818, 1964
NlaIV GGNNCC 6 cut(s) 57, 305, 822, 1407, 1557, 1707
NspI RCATGY 2 cut(s) 590, 874
PaeR7I CTCGAG 1 cut(s) 978
PagI TCATGA 1 cut(s) 729
PfeI GAWTC 3 cut(s) 284, 1127, 1975
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 5 cut(s) 223, 411, 843, 1100, 1301
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 6 cut(s) 57, 305, 822, 1407, 1557, 1707
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 4 cut(s) 1006, 1312, 1462, 1762
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 6 cut(s) 916, 1012, 1063, 1264, 1315, 1615
RsaI GTAC 3 cut(s) 822, 1095, 1249
RsaNI GTAC 3 cut(s) 821, 1094, 1248
RseI CAYNNNNRTG 2 cut(s) 333, 728
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 5 cut(s) 222, 410, 842, 1099, 1300
ScaI AGTACT 1 cut(s) 1249
ScrFI CCNGG 3 cut(s) 156, 818, 1964
SduI GDGCHC 2 cut(s) 1751, 1901
SfaNI GCATC 5 cut(s) 550, 664, 853, 914, 959
SfcI CTRYAG 5 cut(s) 604, 1002, 1308, 1458, 1758
Sfr274I CTCGAG 1 cut(s) 978
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 978
SmiMI CAYNNNNRTG 2 cut(s) 333, 728
SmlI CTYRAG 4 cut(s) 141, 530, 836, 978
SmoI CTYRAG 4 cut(s) 141, 530, 836, 978
SsiI CCGC 3 cut(s) 119, 222, 1698
SspMI CTAG 3 cut(s) 296, 941, 1028
StyD4I CCNGG 3 cut(s) 154, 816, 1962
TaaI ACNGT 3 cut(s) 104, 1687, 1986
TaiI ACGT 1 cut(s) 739
TaqI TCGA 3 cut(s) 24, 525, 979
TatI WGTACW 1 cut(s) 1247
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 3 cut(s) 284, 1127, 1975
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 8 cut(s) 107, 421, 551, 807, 1542, 1692, 1842, 1991
TseI GCWGC 4 cut(s) 409, 841, 1098, 1299
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 8 cut(s) 107, 421, 551, 807, 1542, 1692, 1842, 1991
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 5 cut(s) 271, 382, 508, 557, 1359
XceI RCATGY 2 cut(s) 590, 874
XhoI CTCGAG 1 cut(s) 978
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 3 cut(s) 296, 941, 1028
ZrmI AGTACT 1 cut(s) 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.