RchiOBHm_Chr1g0331291

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004794
Physical Location & Seq
Reverse (-)
21134446 .. 21140696
6251 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56032

Sequence Viewer

Length: 1203 bp
ATGATGCAGGAATTGTCAACCATCAATGACCTACCTGCGACTAATGTGGAACTGGAACCGGAAAAGATAGAAGATGGGAAAGATGGAGGTCCTTCATTCCACTGTAAACTTTACAGCACAGAATTAGTCCACAAGATAGCTCAGGTTTTCATTCCTGGATTAGCTACTGCATGTGTTGATAACACATCTGGTGATATCTTCAAGATCCCTGCTTCTGTGGCCGCCGATGTGAGAAAGGAAATGGTGGAGTATATCACTCAAAGAAGTGAGAATTTTGTTGCAGAATCTGTTATCCTAGAAGGGGGCCAAGATGGACAAGTTTCTGATCATCCCTATGACATAATTTCTGATTTTGTTGATGACTTTGCAAGTTCCAAGAGAAATTTGTTTAGTCGGGTTTCAGGATGGCTGCTCAGTGAAAAGAGAGAAGATAAAATAGATGATTTTATTCAAGAGATGGAAATAAATGGGTTTTGGTTGGTTGATAAAAGAGAAACAATAGCACAGAATTTGCTAAAGAATGTCGACCTTAAGAATGAGCATCACTGCAATATGAAATTTCACACCCCAGAGGAGCTTGAAGCGCATGTTCTAAAGTGTAGCTATAGGTCTATGAGTTGCATACATGAAGGATGTAATGCCATATTTTGTGCAAGTCAGGTGGATAAACATGATGCAGTTTGCCCCTTCAAGATAATTCCATGCGAACAAAACTGCTCCGACATGATCATGAGACGTGAAATGGACAGACATTGTATTACCATCTGTCCAATGAAGCTTGTTAGTTGTCCGTTCTATGCAGTGGGTTGTCAATCCCCGGTACCACATTGTAAGCTTGAGCAGCATCGTTCAGATGATCTCCATTCTCACATGCTGTTTGTTCTACAAAGTATTCATAAGGAAGTATCTATGGAAGATCTGAAAAGAAGGCTGGAGCAACTAAAAGACGCATCTTCATCCAATAACTTGGCACTAGCTCGAGATGTGAGATCACTAACCTCTGCAGTCAAGGATCTTGAAGCAAAACTAGGGCCGATGGAAATTAGCAGGAAACACCATGAGGATCTTGAAGCAGAACATGGGCCAGAGGAAGTAGGTAGCAAAAGCAAAACTCCAGAGGATGTGGAATCAGGGCCAAAAGAAGTGAGCAGCAAACCCCCTGAGGAACTCGAGAAATTAAGTGACAAAGGAAGTGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

400

Amino Acids

45.1

Weight (kDa)

5.14

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 224 - 282 3.5e-11 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
Acc65I GGTACC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 820
AccI GTMKAC 1 cut(s) 525
AciI CCGC 1 cut(s) 222
AclWI GGATC 3 cut(s) 199, 1020, 1071
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 4 cut(s) 271, 382, 508, 557
AfaI GTAC 1 cut(s) 822
AfiI CCNNNNNNNGG 1 cut(s) 301
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 6 cut(s) 202, 452, 581, 691, 1019, 1070
AjiI CACGTC 1 cut(s) 737
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 7 cut(s) 140, 164, 577, 603, 778, 835, 977
AluI AGCT 7 cut(s) 140, 164, 577, 603, 778, 835, 977
Alw26I GTCTC 1 cut(s) 727
AlwI GGATC 3 cut(s) 199, 1020, 1071
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 2 cut(s) 978, 1169
AoxI GGCC 5 cut(s) 219, 304, 1031, 1082, 1133
ApeKI GCWGC 3 cut(s) 409, 841, 1149
ApoI RAATTY 4 cut(s) 271, 382, 508, 557
Asp718I GGTACC 1 cut(s) 820
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 5 cut(s) 89, 304, 1031, 1082, 1133
AsuC2I CCSGG 1 cut(s) 818
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 2 cut(s) 978, 1169
AvaII GGWCC 1 cut(s) 89
AxyI CCTNAGG 1 cut(s) 1161
BanI GGYRCC 1 cut(s) 820
BbvI GCAGC 3 cut(s) 396, 853, 1161
BccI CCATC 8 cut(s) 29, 68, 77, 305, 399, 451, 770, 1030
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 2 cut(s) 325, 726
BcnI CCSGG 1 cut(s) 818
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 3 cut(s) 296, 974, 1028
BfmI CTRYAG 2 cut(s) 604, 1002
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 916
BisI GCNGC 4 cut(s) 222, 410, 842, 1150
BlsI GCNGC 4 cut(s) 223, 411, 843, 1151
Bme1390I CCNGG 2 cut(s) 156, 818
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 2 cut(s) 978, 1169
BmgBI CACGTC 1 cut(s) 737
BmgT120I GGNCC 5 cut(s) 89, 304, 1031, 1082, 1133
BmiI GGNNCC 3 cut(s) 57, 305, 822
BmrFI CCNGG 2 cut(s) 156, 818
BmsI GCATC 4 cut(s) 550, 664, 853, 959
BpmI CTGGAG 2 cut(s) 953, 1098
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 818
BsaJI CCNNGG 1 cut(s) 816
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 57
Bse21I CCTNAGG 1 cut(s) 1161
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 816
BseGI GGATG 5 cut(s) 328, 410, 638, 956, 1126
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 3 cut(s) 155, 427, 1152
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 3 cut(s) 396, 853, 1161
BshFI GGCC 5 cut(s) 221, 306, 1033, 1084, 1135
BshNI GGYRCC 1 cut(s) 820
BsiHKCI CYCGRG 2 cut(s) 978, 1169
BsiSI CCGG 2 cut(s) 59, 818
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 727
BsmBI CGTCTC 1 cut(s) 727
BsnI GGCC 5 cut(s) 221, 306, 1033, 1084, 1135
BsoBI CYCGRG 2 cut(s) 978, 1169
Bsp143I GATC 8 cut(s) 204, 325, 726, 856, 916, 989, 1012, 1063
BspACI CCGC 1 cut(s) 222
BspANI GGCC 5 cut(s) 221, 306, 1033, 1084, 1135
BspCNI CTCAG 3 cut(s) 154, 426, 1153
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 3 cut(s) 57, 305, 822
BspMAI CTGCAG 1 cut(s) 1006
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 3 cut(s) 199, 1020, 1071
BspT107I GGYRCC 1 cut(s) 820
BspTI CTTAAG 1 cut(s) 530
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 8 cut(s) 204, 325, 726, 856, 916, 989, 1012, 1063
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 104
BstAFI CTTAAG 1 cut(s) 530
BstDEI CTNAG 3 cut(s) 141, 413, 1161
BstF5I GGATG 5 cut(s) 328, 410, 638, 956, 1126
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 8 cut(s) 207, 328, 729, 859, 919, 992, 1015, 1066
BstMAI GTCTC 1 cut(s) 727
BstMBI GATC 8 cut(s) 204, 325, 726, 856, 916, 989, 1012, 1063
BstMWI GCNNNNNNNGC 3 cut(s) 218, 583, 841
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 3 cut(s) 174, 590, 874
BstSCI CCNGG 2 cut(s) 154, 816
BstSFI CTRYAG 2 cut(s) 604, 1002
BstV1I GCAGC 3 cut(s) 396, 853, 1161
BstX2I RGATCY 4 cut(s) 204, 916, 1012, 1063
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 4 cut(s) 204, 916, 1012, 1063
Bsu36I CCTNAGG 1 cut(s) 1161
BsuRI GGCC 5 cut(s) 221, 306, 1033, 1084, 1135
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 5 cut(s) 328, 410, 638, 956, 1126
BtsI GCAGTG 2 cut(s) 544, 807
BtsIMutI CAGTG 4 cut(s) 100, 421, 544, 807
BveI ACCTGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 1 cut(s) 729
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 5 cut(s) 89, 304, 1031, 1082, 1133
CseI GACGC 1 cut(s) 956
Csp6I GTAC 1 cut(s) 821
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CviQI GTAC 1 cut(s) 821
DdeI CTNAG 3 cut(s) 141, 413, 1161
DpnI GATC 8 cut(s) 206, 327, 728, 858, 918, 991, 1014, 1065
DpnII GATC 8 cut(s) 204, 325, 726, 856, 916, 989, 1012, 1063
EaeI YGGCCR 1 cut(s) 219
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 89
Eco81I CCTNAGG 1 cut(s) 1161
Eco88I CYCGRG 2 cut(s) 978, 1169
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 727
FbaI TGATCA 2 cut(s) 325, 726
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 4 cut(s) 222, 410, 842, 1150
FokI GGATG 5 cut(s) 315, 417, 645, 943, 1133
Fsp4HI GCNGC 4 cut(s) 222, 410, 842, 1150
FspBI CTAG 3 cut(s) 296, 974, 1028
GlaI GCGC 1 cut(s) 585
GluI GCNGC 4 cut(s) 222, 410, 842, 1150
GsuI CTGGAG 2 cut(s) 953, 1098
HaeIII GGCC 5 cut(s) 221, 306, 1033, 1084, 1135
HapII CCGG 2 cut(s) 59, 818
HgaI GACGC 1 cut(s) 956
HhaI GCGC 1 cut(s) 586
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 2 cut(s) 18, 526
HindII GTYRAC 2 cut(s) 18, 526
HindIII AAGCTT 2 cut(s) 776, 833
HinfI GANTC 2 cut(s) 284, 1127
HpaII CCGG 2 cut(s) 59, 818
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 4 cut(s) 18, 107, 130, 526
Hpy188I TCNGA 5 cut(s) 325, 349, 721, 853, 921
Hpy8I GTNNAC 4 cut(s) 18, 107, 130, 526
HpyAV CCTTC 5 cut(s) 102, 293, 623, 697, 921
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 736
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 583, 841
HpyF3I CTNAG 3 cut(s) 141, 413, 1161
HpySE526I ACGT 1 cut(s) 736
HspAI GCGC 1 cut(s) 584
KpnI GGTACC 1 cut(s) 824
Ksp22I TGATCA 2 cut(s) 325, 726
Kzo9I GATC 8 cut(s) 204, 325, 726, 856, 916, 989, 1012, 1063
LmnI GCTCC 3 cut(s) 574, 722, 934
Lsp1109I GCAGC 3 cut(s) 396, 853, 1161
LweI GCATC 4 cut(s) 550, 664, 853, 959
MaeI CTAG 3 cut(s) 296, 974, 1028
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 1 cut(s) 1181
MalI GATC 8 cut(s) 206, 327, 728, 858, 918, 991, 1014, 1065
MboI GATC 8 cut(s) 204, 325, 726, 856, 916, 989, 1012, 1063
MboII GAAGA 5 cut(s) 83, 190, 440, 926, 945
MflI RGATCY 4 cut(s) 204, 916, 1012, 1063
MmeI TCCRAC 1 cut(s) 744
MnlI CCTC 7 cut(s) 80, 565, 1009, 1054, 1081, 1111, 1156
MseI TTAA 2 cut(s) 531, 1178
MslI CAYNNNNRTG 2 cut(s) 333, 728
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 2 cut(s) 59, 818
MspR9I CCNGG 2 cut(s) 156, 818
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 218, 583, 841
NciI CCSGG 1 cut(s) 818
NdeII GATC 8 cut(s) 204, 325, 726, 856, 916, 989, 1012, 1063
NlaIV GGNNCC 3 cut(s) 57, 305, 822
NmuCI GTSAC 1 cut(s) 1181
NspI RCATGY 3 cut(s) 174, 590, 874
PaeR7I CTCGAG 2 cut(s) 978, 1169
PagI TCATGA 1 cut(s) 729
PfeI GAWTC 2 cut(s) 284, 1127
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 4 cut(s) 223, 411, 843, 1151
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 57, 305, 822
PspPI GGNCC 5 cut(s) 89, 304, 1031, 1082, 1133
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 1 cut(s) 1006
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 4 cut(s) 204, 916, 1012, 1063
RsaI GTAC 1 cut(s) 822
RsaNI GTAC 1 cut(s) 821
RseI CAYNNNNRTG 2 cut(s) 333, 728
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 2 cut(s) 531, 1178
SatI GCNGC 4 cut(s) 222, 410, 842, 1150
Sau3AI GATC 8 cut(s) 204, 325, 726, 856, 916, 989, 1012, 1063
Sau96I GGNCC 5 cut(s) 89, 304, 1031, 1082, 1133
ScrFI CCNGG 2 cut(s) 156, 818
SfaNI GCATC 4 cut(s) 550, 664, 853, 959
SfcI CTRYAG 2 cut(s) 604, 1002
Sfr274I CTCGAG 2 cut(s) 978, 1169
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 2 cut(s) 978, 1169
SmiMI CAYNNNNRTG 2 cut(s) 333, 728
SmlI CTYRAG 4 cut(s) 530, 836, 978, 1169
SmoI CTYRAG 4 cut(s) 530, 836, 978, 1169
SsiI CCGC 1 cut(s) 222
SspMI CTAG 3 cut(s) 296, 974, 1028
StyD4I CCNGG 2 cut(s) 154, 816
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 739
TaqI TCGA 3 cut(s) 525, 979, 1170
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 2 cut(s) 284, 1127
Tru1I TTAA 2 cut(s) 531, 1178
Tru9I TTAA 2 cut(s) 531, 1178
TscAI CASTG 4 cut(s) 107, 421, 551, 807
TseFI GTSAC 1 cut(s) 1181
TseI GCWGC 3 cut(s) 409, 841, 1149
Tsp45I GTSAC 1 cut(s) 1181
TspDTI ATGAA 7 cut(s) 84, 139, 569, 642, 788, 884, 945
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 4 cut(s) 107, 421, 551, 807
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 4 cut(s) 271, 382, 508, 557
XceI RCATGY 3 cut(s) 174, 590, 874
XhoI CTCGAG 2 cut(s) 978, 1169
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 3 cut(s) 296, 974, 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.