Rh1CG112200

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004794
Physical Location & Seq
Reverse (-)
22646083 .. 22654730
8648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG112200.1

Sequence Viewer

Length: 1935 bp
ATGATGCAGGACTTGTCAACCATCGATGACCTACCTGCGACTAATGTGGAACTGGAACCGGAAAAGATAGAAGATGGGAAAGATGGAGGTCCTTCATTCCACTGTAAACTTTACAGCACGGAATTAGTCCACAAGATAGCTCAGGTTTTCATTCCTGGATTAGCTACTGCATGTGTTGATAACACATCTGGTGATATCTTCAAGACCCCTGCTTCTGTGGCCGCCGATGTGAGAAAGGAAATGGTGGAGTATATCACTCAAAGAAGTGAGAATTTTGTTGCAGAATCTGTTATCCTAGAAGGGGGCCAGGATGGACAAGTATCTGATCATCCCTATGACATAATTTCTGATTTTGTTGATGACTTTGCAAGTTCCAAGAGAAATTTGTTTAGTCGGGTTTCGGGATGGCTGCTCAGTGAAAAGAGAGAAGATAAAATAGATGATTTTGTTCAAGAAATGGAAATAAATGGGTTTTGGTTGGTTGATAAAAGAGAAACAATAGCACAGAATTTGCTAAAGAATGTCGACCTTAAGAATGAGCATCACTGCAATATGAAATTTCACACCCCAGAGGAGCTTGAAGCGCATGTTCTAAAGTGTAGCTATAGGTCTATGAGTTGCATACATGAAGGATGTAATGCCATATTTTGTGCAAGTCAGGTGGATAAACATGATGCAGTTTGCCCCTTCAAGATAATTTCATGCGAACAAAACTGCTCCAACATGATCATGAGACGTGAAATGGACAGACATTGTATTACCATCTGTCCAATGAAGCTTGTTAGTTGTCCGTTCTATGCAGTGGGTTGTCAATCCCCGGTACCACATTGTAAGCTTGAGCAGCATCGTTCAGATGATCTCCATTCTCACATGCTGTTTGTTCTACAAAGTATTCATAAGGAAGCATCTATGGAAGATCTGAAAAGAAGGCTGGAGCAACTAAAAGACGCATCTTCATCCAATAACTTGGCACAAGCTCGAGATGTGAGATCACTAACCTCTGCAGTCAAGGAGCTTGAAGCAAAACTAGGGCCGATGGAAATTAGCAGGAAACACCGTGAGGATCTTGAAGCAGAACATGGGCCAGAGGAAGTAGGCAGCAAAAGCAAAACTCCAGAGGATGTGGAATCAAGGCCAAAAGAAGTGAGTAATAAACCTGAGGAGGACTTTGAAGTAAAACCAGCACCAAAGGAAGTTAGCCAACAATTGGAGTATCTTGAAGCAAAATCAGAGCCAAAGGAAGTTAGTACTAAATCTGTGGAGGATCTTGAACCTAAACTAGCACCAAAGGAAGATCTTGGAGCTAAACCGGCACCAAAGGAACTGAGCACCAGACCTGCAGAAGATCTTGAAGCAAAACCAGCTCCAAAGGAAGTCAGTAGTTCAAAAACCCCCAAAGATGTTGAAGAAAGGCCAGTGGGAGTGAGCGGTAAGGCTCCAACAGGACATGAAGCTAAACCAGCACCAAAGGAACTGAGCACCAAACCTGCAGAAGATCGTGAAGCAAAACCAGCTCCGAAAGAAGTCAGTAGTTCAAAACCCCCGGAAGATGTTGAAGCAAGGTCAGTGGGAGTGAGCAATAAGGCCTCTACAGGACATGAAGAAAAATTAGGGACAAAGGAAGTGAGAAGCGAATTGCCAGAGGAGCTCGAAACAGAACTAGGAACAAAGGAAGTGGGAAGCAAACCACCAGAGGAACTTGAAACACAACTAGGAATCAAGGAAGTGAGCAGCAAACTTCAACAGGAACTTGAAACAAAACTAGGAAGAAAAGAGGTAGGCAGCAAAACCCCAGAAGGATACGAAAGACAATTAGTAACAAAGGATGTCAACAGCAAACTCGAGGAACTTAAAAAAGAACTTGGGACAAAGGAAGTGAGCAGCAAACCCCCAGAGGAACTCGAGAAATTAAGTGACAAAGGAAGTGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

644

Amino Acids

71.75

Weight (kDa)

5.15

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 224 - 282 2.1e-10 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 43, 1345, 1495
Acc65I GGTACC 1 cut(s) 820
AccB1I GGYRCC 2 cut(s) 820, 1312
AccB7I CCANNNNNTGG 1 cut(s) 1207
AccBSI CCGCTC 1 cut(s) 1428
AccI GTMKAC 1 cut(s) 525
AciI CCGC 2 cut(s) 222, 1428
AclWI GGATC 2 cut(s) 1071, 1272
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 4 cut(s) 271, 382, 508, 557
AfaI GTAC 2 cut(s) 822, 1249
AfiI CCNNNNNNNGG 2 cut(s) 301, 1207
AflII CTTAAG 1 cut(s) 530
AjiI CACGTC 1 cut(s) 737
AjnI CCWGG 2 cut(s) 154, 306
Alw21I GWGCWC 3 cut(s) 1331, 1481, 1650
Alw26I GTCTC 1 cut(s) 727
AlwI GGATC 2 cut(s) 1071, 1272
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 3 cut(s) 978, 1841, 1901
AoxI GGCC 7 cut(s) 219, 304, 1031, 1082, 1133, 1412, 1584
ApeKI GCWGC 6 cut(s) 409, 841, 1098, 1731, 1782, 1881
ApoI RAATTY 4 cut(s) 271, 382, 508, 557
Asp718I GGTACC 1 cut(s) 820
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 4 cut(s) 89, 304, 1031, 1082
AsuC2I CCSGG 2 cut(s) 818, 1544
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 3 cut(s) 978, 1841, 1901
AvaII GGWCC 1 cut(s) 89
AxyI CCTNAGG 1 cut(s) 1158
BanI GGYRCC 2 cut(s) 820, 1312
BanII GRGCYC 1 cut(s) 1650
Bbv12I GWGCWC 3 cut(s) 1331, 1481, 1650
BbvI GCAGC 6 cut(s) 396, 853, 1110, 1743, 1794, 1893
BccI CCATC 7 cut(s) 29, 68, 77, 305, 399, 770, 1030
BciT130I CCWGG 2 cut(s) 156, 308
BciVI GTATCC 1 cut(s) 1793
BclI TGATCA 2 cut(s) 325, 726
BcnI CCSGG 2 cut(s) 818, 1544
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 6 cut(s) 296, 1028, 1280, 1661, 1712, 1763
BfmI CTRYAG 5 cut(s) 604, 1002, 1338, 1488, 1590
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 3 cut(s) 43, 1345, 1495
BfuI GTATCC 1 cut(s) 1793
BglII AGATCT 3 cut(s) 916, 1294, 1345
BisI GCNGC 7 cut(s) 222, 410, 842, 1099, 1732, 1783, 1882
BlsI GCNGC 7 cut(s) 223, 411, 843, 1100, 1733, 1784, 1883
BmcAI AGTACT 1 cut(s) 1249
Bme1390I CCNGG 4 cut(s) 156, 308, 818, 1544
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 3 cut(s) 978, 1841, 1901
BmgBI CACGTC 1 cut(s) 737
BmgT120I GGNCC 4 cut(s) 89, 304, 1031, 1082
BmiI GGNNCC 5 cut(s) 57, 305, 822, 1314, 1437
BmrFI CCNGG 4 cut(s) 156, 308, 818, 1544
BmsI GCATC 5 cut(s) 550, 664, 853, 914, 959
BpmI CTGGAG 2 cut(s) 953, 1098
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 2 cut(s) 818, 1544
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 816, 1542
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 1207
Bse118I RCCGGY 1 cut(s) 1309
Bse1I ACTGG 2 cut(s) 57, 1415
Bse21I CCTNAGG 1 cut(s) 1158
BseBI CCWGG 2 cut(s) 156, 308
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 816, 1542
BseGI GGATG 7 cut(s) 316, 328, 410, 638, 956, 1126, 1831
BseLI CCNNNNNNNGG 2 cut(s) 301, 1207
BseMII CTCAG 5 cut(s) 155, 427, 1149, 1316, 1466
BseNI ACTGG 2 cut(s) 57, 1415
BseRI GAGGAG 3 cut(s) 587, 1175, 1658
BseXI GCAGC 6 cut(s) 396, 853, 1110, 1743, 1794, 1893
BshFI GGCC 7 cut(s) 221, 306, 1033, 1084, 1135, 1414, 1586
BshNI GGYRCC 2 cut(s) 820, 1312
BshVI ATCGAT 1 cut(s) 24
BsiHKAI GWGCWC 3 cut(s) 1331, 1481, 1650
BsiHKCI CYCGRG 3 cut(s) 978, 1841, 1901
BsiSI CCGG 4 cut(s) 59, 818, 1310, 1544
BslFI GGGAC 2 cut(s) 1627, 1879
BslI CCNNNNNNNGG 2 cut(s) 301, 1207
BsmAI GTCTC 1 cut(s) 727
BsmBI CGTCTC 1 cut(s) 727
BsmFI GGGAC 2 cut(s) 1627, 1879
BsnI GGCC 7 cut(s) 221, 306, 1033, 1084, 1135, 1414, 1586
BsoBI CYCGRG 3 cut(s) 978, 1841, 1901
Bsp1286I GDGCHC 3 cut(s) 1331, 1481, 1650
BspACI CCGC 2 cut(s) 222, 1428
BspANI GGCC 7 cut(s) 221, 306, 1033, 1084, 1135, 1414, 1586
BspCNI CTCAG 5 cut(s) 154, 426, 1150, 1317, 1467
BspDI ATCGAT 1 cut(s) 24
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 5 cut(s) 57, 305, 822, 1314, 1437
BspMAI CTGCAG 3 cut(s) 1006, 1342, 1492
BspMI ACCTGC 3 cut(s) 43, 1345, 1495
BspPI GGATC 2 cut(s) 1071, 1272
BspT107I GGYRCC 2 cut(s) 820, 1312
BspTI CTTAAG 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 1428
BsrFI RCCGGY 1 cut(s) 1309
BsrI ACTGG 2 cut(s) 57, 1415
BssAI RCCGGY 1 cut(s) 1309
BssECI CCNNGG 2 cut(s) 816, 1542
Bst2UI CCWGG 2 cut(s) 156, 308
Bst4CI ACNGT 2 cut(s) 104, 1058
BstAFI CTTAAG 1 cut(s) 530
BstDEI CTNAG 5 cut(s) 141, 413, 1158, 1325, 1475
BstF5I GGATG 7 cut(s) 316, 328, 410, 638, 956, 1126, 1831
BstHHI GCGC 1 cut(s) 586
BstMAI GTCTC 1 cut(s) 727
BstMWI GCNNNNNNNGC 9 cut(s) 218, 583, 841, 1104, 1310, 1361, 1460, 1511, 1645
BstNI CCWGG 2 cut(s) 156, 308
BstNSI RCATGY 3 cut(s) 174, 590, 874
BstSCI CCNGG 4 cut(s) 154, 306, 816, 1542
BstSFI CTRYAG 5 cut(s) 604, 1002, 1338, 1488, 1590
BstV1I GCAGC 6 cut(s) 396, 853, 1110, 1743, 1794, 1893
BstX2I RGATCY 5 cut(s) 916, 1063, 1264, 1294, 1345
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 5 cut(s) 916, 1063, 1264, 1294, 1345
Bsu15I ATCGAT 1 cut(s) 24
Bsu36I CCTNAGG 1 cut(s) 1158
BsuI GTATCC 1 cut(s) 1793
BsuRI GGCC 7 cut(s) 221, 306, 1033, 1084, 1135, 1414, 1586
BsuTUI ATCGAT 1 cut(s) 24
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 7 cut(s) 316, 328, 410, 638, 956, 1126, 1831
BtsI GCAGTG 2 cut(s) 544, 807
BtsIMutI CAGTG 6 cut(s) 100, 421, 544, 807, 1422, 1572
BveI ACCTGC 3 cut(s) 43, 1345, 1495
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 1 cut(s) 729
CfoI GCGC 1 cut(s) 586
Cfr10I RCCGGY 1 cut(s) 1309
Cfr13I GGNCC 4 cut(s) 89, 304, 1031, 1082
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 956
Csp6I GTAC 2 cut(s) 821, 1248
CspCI CAANNNNNGTGG 6 cut(s) 642, 677, 1548, 1583, 1656, 1691
CviQI GTAC 2 cut(s) 821, 1248
DdeI CTNAG 5 cut(s) 141, 413, 1158, 1325, 1475
EaeI YGGCCR 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 1648
Eco147I AGGCCT 1 cut(s) 1586
Eco24I GRGCYC 1 cut(s) 1650
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 1648
Eco81I CCTNAGG 1 cut(s) 1158
Eco88I CYCGRG 3 cut(s) 978, 1841, 1901
EcoICRI GAGCTC 1 cut(s) 1648
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 2 cut(s) 154, 306
EcoRV GATATC 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 1650
Esp3I CGTCTC 1 cut(s) 727
FaqI GGGAC 2 cut(s) 1627, 1879
FbaI TGATCA 2 cut(s) 325, 726
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 7 cut(s) 222, 410, 842, 1099, 1732, 1783, 1882
FokI GGATG 7 cut(s) 315, 323, 417, 645, 943, 1133, 1838
FriOI GRGCYC 1 cut(s) 1650
Fsp4HI GCNGC 7 cut(s) 222, 410, 842, 1099, 1732, 1783, 1882
FspBI CTAG 6 cut(s) 296, 1028, 1280, 1661, 1712, 1763
GlaI GCGC 1 cut(s) 585
GluI GCNGC 7 cut(s) 222, 410, 842, 1099, 1732, 1783, 1882
GsuI CTGGAG 2 cut(s) 953, 1098
HaeIII GGCC 7 cut(s) 221, 306, 1033, 1084, 1135, 1414, 1586
HapII CCGG 4 cut(s) 59, 818, 1310, 1544
HgaI GACGC 1 cut(s) 956
HhaI GCGC 1 cut(s) 586
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 3 cut(s) 18, 526, 1831
HindII GTYRAC 3 cut(s) 18, 526, 1831
HindIII AAGCTT 2 cut(s) 776, 833
HinfI GANTC 3 cut(s) 284, 1127, 1716
HpaII CCGG 4 cut(s) 59, 818, 1310, 1544
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 5 cut(s) 18, 107, 130, 526, 1831
Hpy188I TCNGA 6 cut(s) 325, 349, 853, 921, 1231, 1518
Hpy8I GTNNAC 5 cut(s) 18, 107, 130, 526, 1831
HpyAV CCTTC 6 cut(s) 102, 293, 623, 697, 921, 1790
HpyCH4III ACNGT 2 cut(s) 104, 1058
HpyCH4IV ACGT 1 cut(s) 736
HpyF10VI GCNNNNNNNGC 9 cut(s) 218, 583, 841, 1104, 1310, 1361, 1460, 1511, 1645
HpyF3I CTNAG 5 cut(s) 141, 413, 1158, 1325, 1475
HpySE526I ACGT 1 cut(s) 736
HspAI GCGC 1 cut(s) 584
KpnI GGTACC 1 cut(s) 824
Ksp22I TGATCA 2 cut(s) 325, 726
LmnI GCTCC 9 cut(s) 574, 722, 934, 1012, 1301, 1369, 1441, 1519, 1645
Lsp1109I GCAGC 6 cut(s) 396, 853, 1110, 1743, 1794, 1893
LweI GCATC 5 cut(s) 550, 664, 853, 914, 959
MaeI CTAG 6 cut(s) 296, 1028, 1280, 1661, 1712, 1763
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 2 cut(s) 1816, 1913
MbiI CCGCTC 1 cut(s) 1428
MfeI CAATTG 1 cut(s) 1205
MflI RGATCY 5 cut(s) 916, 1063, 1264, 1294, 1345
MhlI GDGCHC 3 cut(s) 1331, 1481, 1650
MmeI TCCRAC 2 cut(s) 744, 1463
MseI TTAA 3 cut(s) 531, 1851, 1910
MslI CAYNNNNRTG 2 cut(s) 333, 728
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 4 cut(s) 59, 818, 1310, 1544
MspR9I CCNGG 4 cut(s) 156, 308, 818, 1544
MunI CAATTG 1 cut(s) 1205
MvaI CCWGG 2 cut(s) 156, 308
MwoI GCNNNNNNNGC 9 cut(s) 218, 583, 841, 1104, 1310, 1361, 1460, 1511, 1645
NciI CCSGG 2 cut(s) 818, 1544
NlaIV GGNNCC 5 cut(s) 57, 305, 822, 1314, 1437
NmuCI GTSAC 1 cut(s) 1913
NspI RCATGY 3 cut(s) 174, 590, 874
PaeR7I CTCGAG 3 cut(s) 978, 1841, 1901
PagI TCATGA 1 cut(s) 729
PceI AGGCCT 1 cut(s) 1586
PfeI GAWTC 3 cut(s) 284, 1127, 1716
PflMI CCANNNNNTGG 1 cut(s) 1207
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 7 cut(s) 223, 411, 843, 1100, 1733, 1784, 1883
PpuMI RGGWCCY 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 1650
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 154, 306
PspGI CCWGG 2 cut(s) 154, 306
PspN4I GGNNCC 5 cut(s) 57, 305, 822, 1314, 1437
PspPI GGNCC 4 cut(s) 89, 304, 1031, 1082
PspPPI RGGWCCY 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 1841
PstI CTGCAG 3 cut(s) 1006, 1342, 1492
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 5 cut(s) 916, 1063, 1264, 1294, 1345
RsaI GTAC 2 cut(s) 822, 1249
RsaNI GTAC 2 cut(s) 821, 1248
RseI CAYNNNNRTG 2 cut(s) 333, 728
SacI GAGCTC 1 cut(s) 1650
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 3 cut(s) 531, 1851, 1910
SatI GCNGC 7 cut(s) 222, 410, 842, 1099, 1732, 1783, 1882
Sau96I GGNCC 4 cut(s) 89, 304, 1031, 1082
ScaI AGTACT 1 cut(s) 1249
ScrFI CCNGG 4 cut(s) 156, 308, 818, 1544
SduI GDGCHC 3 cut(s) 1331, 1481, 1650
SfaNI GCATC 5 cut(s) 550, 664, 853, 914, 959
SfcI CTRYAG 5 cut(s) 604, 1002, 1338, 1488, 1590
Sfr274I CTCGAG 3 cut(s) 978, 1841, 1901
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 3 cut(s) 978, 1841, 1901
SmiMI CAYNNNNRTG 2 cut(s) 333, 728
SmlI CTYRAG 5 cut(s) 530, 836, 978, 1841, 1901
SmoI CTYRAG 5 cut(s) 530, 836, 978, 1841, 1901
SseBI AGGCCT 1 cut(s) 1586
SsiI CCGC 2 cut(s) 222, 1428
SspMI CTAG 6 cut(s) 296, 1028, 1280, 1661, 1712, 1763
SstI GAGCTC 1 cut(s) 1650
StuI AGGCCT 1 cut(s) 1586
StyD4I CCNGG 4 cut(s) 154, 306, 816, 1542
TaaI ACNGT 2 cut(s) 104, 1058
TaiI ACGT 1 cut(s) 739
TaqI TCGA 6 cut(s) 24, 525, 979, 1650, 1842, 1902
TatI WGTACW 1 cut(s) 1247
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 3 cut(s) 284, 1127, 1716
Tru1I TTAA 3 cut(s) 531, 1851, 1910
Tru9I TTAA 3 cut(s) 531, 1851, 1910
TscAI CASTG 6 cut(s) 107, 421, 551, 807, 1422, 1572
TseFI GTSAC 1 cut(s) 1913
TseI GCWGC 6 cut(s) 409, 841, 1098, 1731, 1782, 1881
Tsp45I GTSAC 1 cut(s) 1913
TspGWI ACGGA 2 cut(s) 134, 780
TspRI CASTG 6 cut(s) 107, 421, 551, 807, 1422, 1572
Van91I CCANNNNNTGG 1 cut(s) 1207
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 4 cut(s) 271, 382, 508, 557
XceI RCATGY 3 cut(s) 174, 590, 874
XhoI CTCGAG 3 cut(s) 978, 1841, 1901
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 6 cut(s) 296, 1028, 1280, 1661, 1712, 1763
ZrmI AGTACT 1 cut(s) 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.