Rw1G009400

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004794
Physical Location & Seq
Reverse (-)
20640090 .. 20648054
7965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009400.1

Sequence Viewer

Length: 2250 bp
ATGATGCAGGAATTGTCAACCATCGATGACCTACCTGCGACTAATGTGGAACTGGAACCGGAAAAGATAGAAGATGGTAAAGATGGAGGTCCTTCATTCCACTGTAAACTTTGCAGCACGGAATTAGTCCACAAGATAGCTCAGGTTTTCATTCCTGGATTAGCTACTGCATGTGTTGATAACACATCTGGTGATATCTTCAAGACCCCTGCTTCTGTGGCCGCCGATGTGAGAAAGGAAATGGTGGAGTATATCACTCAAAGAAGTGAGAATTTTGTTGCAGAATCTGTTATCCTAGAAGGGGGCCAAGATGGACAAGTATCTGATCATCCCTATGACATAATTTCTGATTTTGTTGATGACTTTGCAAGTTCCAAAAGAAATTTGTTTAGTCGGGTTTCGGGATGGCTGCTCAGTGAAAAGAGAGAAGATAAAATAGATGATTTTGTTCAAGAGATGGAAATAAATGGCTTTTGGCTGGTTGATAAAAGAGAAACAATAGCACAGAATTTGCTAAAGAATGTTGATCTTAAGAATGAGCATCACTGCAATATGAAATTTCACACCCCAGAGGAGCTTGAAGCGCATGTTCTAAAGTGTAGCTATAGGTCTATGAGTTGCATACATGAAGGATGTAATGTCATATTTTGTGCAAGTCAGGTGGATAAACATGATGTAGTTTGCCCCTTCAAGATAATTCCATGCGAACAAAACTGCTCCGACATGATCATGAGACGTGAAATGGACAGACATTGTATTACCATCTGTCCAATGAAGCTTGTTAGTTGTCCGTTCTATGCAGTGGGTTGTCAATCCCCGGTACCACATTGTAAGCTTGAGCAGCATCGTTCAGATGATCTCCATTCTCACATGCTATTTGTTCTACAGAGTATTCATAAGGAAGCATCTATGGAAGATCTGAAAAGAAGGCTAGAGCAACTAAAAGACGCATCTTCTTCCAATAACTTAGCACAAGCTCGAGATGCGAGATCACTAACCTCTGCAGTCAAGGATCTTGAAGCAAAACTAGGGCCGATGGAAATTAGCAGGAAACGCCATGAGGATCATGAAGCAGAACATGGGCCAAAGGAAGTAGGCAGCAAAAGCAAAACTCCAGAGGATGTGGAATCAGGGCCAAAAGAAGTGAGTAATAAACCTGAGGAGGACTTTGAAGTAAAACCAGTACCAAAGGAAGTTAGCCAACAATCAGAGTATTTTGAAGCAAAATCAGAGTCAAGGGAAGTTAGTACTAAATCTGTGGAGGATCTTGAAGCTAAACCAGCACCAAAGGATCTTAGCAGCAAACCTGCAGAAGATCTTGAACCAAAACCAGCTCCAAAGGAAGTCAGTAGTTCAAAAAATCTCAAAGATGTTGAAGCAAGACCAGTGGGAGTGAGCAGTAATGCACCAACAGGACATGAAGCTAAACCAGCACCAAAAGATTTGAGCACTAAACCTGCAGAAGATTATGAAGCAAAACCATCTCCGAAAGAAGTCAGTAGTTCAAAACCCCCTGAAGATGTTGAAGCAAGGCCAGTGGGAGTGAGCAGTAAGGCCCCAACAGGACATGAAGCTAAACCAGCACCAAAGGAACTGAGCACCAAACCTTCAGAAGATCTTGAAGCAAAACCTGCTCTGAAGGAAGTCAGTAGTTCAAAACCCCCCATAGATGTTGAAGCAAAAACAGTGGGAGTGAGCGGTAAGGCCCCAACAGGACATGAAGAAAAATTAGGGGCAAAAGAACTGAGCACCGAACCTGCAGAAGATCATGAAGCAAAAGTAGCTCCGGAGGAAGTCAGTAGTTCAAAAACCCCCAAAGATGTTGAAGTAAAGCCAGTGGGAGTGAGCAGTAAGGCCCCAATCGGACATGAAGCTAAACCAGCAACAAAGGAACTGAGCACCAAACCTGCGGAAGATCTTGAAGCAAAACCAGCTCTGAAGGAAGTCAGTAGTTCAAAACCCGATGTTGAATCAAGGCCAGTGGGAGTGAGCGGTAAGGCCCTAACAGGACATGAAGAAAAATTAGCGACAAAGGAAGTGAGAAGCGAATCACTAGAGGAGATCGAAACAAAACTAGGAGCAAAGGAAGTGGGAAGCAAACCACCAGAGGAACTTGAAACAAATCTAGGAAAAAAAGGAGTGGGCAGCAAAACCCCAGAAAGATATGAAACACAACTAGAAACAAAGGAAGTGAGCTGCAAACCCCCTGAGGAACTCGAAAAATTAAGTGACAAAGGAAGTGAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

749

Amino Acids

82.13

Weight (kDa)

5.23

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 224 - 282 2.3e-10 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 6 cut(s) 43, 1315, 1465, 1639, 1765, 1915
Acc65I GGTACC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 820
AccBSI CCGCTC 2 cut(s) 1698, 1992
AccIII TCCGGA 1 cut(s) 1786
AciI CCGC 4 cut(s) 222, 1698, 1910, 1992
AclWI GGATC 4 cut(s) 1020, 1071, 1272, 1299
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 4 cut(s) 271, 382, 508, 557
AcuI CTGAAG 4 cut(s) 1536, 1593, 1658, 1958
AfaI GTAC 3 cut(s) 822, 1185, 1249
AfiI CCNNNNNNNGG 1 cut(s) 301
AflII CTTAAG 1 cut(s) 530
AjiI CACGTC 1 cut(s) 737
AjnI CCWGG 1 cut(s) 154
Alw21I GWGCWC 4 cut(s) 1451, 1601, 1751, 1901
Alw26I GTCTC 1 cut(s) 727
AlwI GGATC 4 cut(s) 1020, 1071, 1272, 1299
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 978
Aor13HI TCCGGA 1 cut(s) 1786
ApeKI GCWGC 7 cut(s) 114, 409, 841, 1098, 1299, 2145, 2196
ApoI RAATTY 4 cut(s) 271, 382, 508, 557
ArsI GACNNNNNNTTYG 2 cut(s) 1217, 1249
Asp718I GGTACC 1 cut(s) 820
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 9 cut(s) 89, 304, 1031, 1082, 1133, 1555, 1705, 1855, 1999
AsuC2I CCSGG 1 cut(s) 818
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 978
AvaII GGWCC 1 cut(s) 89
AxyI CCTNAGG 2 cut(s) 1158, 2208
BanI GGYRCC 1 cut(s) 820
Bbv12I GWGCWC 4 cut(s) 1451, 1601, 1751, 1901
BbvI GCAGC 7 cut(s) 126, 396, 853, 1110, 1311, 2157, 2183
BccI CCATC 9 cut(s) 29, 68, 77, 305, 399, 451, 770, 1030, 1489
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 2 cut(s) 325, 726
BcnI CCSGG 1 cut(s) 818
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 7 cut(s) 296, 932, 1028, 2054, 2075, 2126, 2177
BfmI CTRYAG 6 cut(s) 604, 884, 1002, 1308, 1458, 1758
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 6 cut(s) 43, 1315, 1465, 1639, 1765, 1915
BglII AGATCT 4 cut(s) 916, 1315, 1615, 1915
BisI GCNGC 8 cut(s) 115, 222, 410, 842, 1099, 1300, 2146, 2197
BlsI GCNGC 8 cut(s) 116, 223, 411, 843, 1100, 1301, 2147, 2198
BmcAI AGTACT 1 cut(s) 1249
Bme1390I CCNGG 2 cut(s) 156, 818
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 978
BmgBI CACGTC 1 cut(s) 737
BmgT120I GGNCC 9 cut(s) 89, 304, 1031, 1082, 1133, 1555, 1705, 1855, 1999
BmiI GGNNCC 6 cut(s) 57, 305, 822, 1557, 1707, 1857
BmrFI CCNGG 2 cut(s) 156, 818
BmsI GCATC 5 cut(s) 550, 853, 914, 959, 973
BpmI CTGGAG 1 cut(s) 1098
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 818
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 816
BsaWI WCCGGW 2 cut(s) 58, 1786
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 6 cut(s) 57, 1181, 1385, 1535, 1835, 1979
Bse21I CCTNAGG 2 cut(s) 1158, 2208
BseAI TCCGGA 1 cut(s) 1786
BseBI CCWGG 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 816
BseGI GGATG 4 cut(s) 328, 410, 638, 1126
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 7 cut(s) 155, 427, 1149, 1586, 1736, 1886, 2199
BseNI ACTGG 6 cut(s) 57, 1181, 1385, 1535, 1835, 1979
BseRI GAGGAG 3 cut(s) 587, 1175, 2072
BseXI GCAGC 7 cut(s) 126, 396, 853, 1110, 1311, 2157, 2183
BshNI GGYRCC 1 cut(s) 820
BshVI ATCGAT 1 cut(s) 24
BsiHKAI GWGCWC 4 cut(s) 1451, 1601, 1751, 1901
BsiHKCI CYCGRG 1 cut(s) 978
BsiSI CCGG 3 cut(s) 59, 818, 1787
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 727
BsmBI CGTCTC 1 cut(s) 727
BsoBI CYCGRG 1 cut(s) 978
Bsp1286I GDGCHC 4 cut(s) 1451, 1601, 1751, 1901
Bsp13I TCCGGA 1 cut(s) 1786
BspACI CCGC 4 cut(s) 222, 1698, 1910, 1992
BspCNI CTCAG 7 cut(s) 154, 426, 1150, 1587, 1737, 1887, 2200
BspDI ATCGAT 1 cut(s) 24
BspEI TCCGGA 1 cut(s) 1786
BspHI TCATGA 3 cut(s) 729, 1066, 1768
BspLI GGNNCC 6 cut(s) 57, 305, 822, 1557, 1707, 1857
BspMAI CTGCAG 4 cut(s) 1006, 1312, 1462, 1762
BspMI ACCTGC 6 cut(s) 43, 1315, 1465, 1639, 1765, 1915
BspPI GGATC 4 cut(s) 1020, 1071, 1272, 1299
BspT107I GGYRCC 1 cut(s) 820
BspTI CTTAAG 1 cut(s) 530
BsrBI CCGCTC 2 cut(s) 1698, 1992
BsrI ACTGG 6 cut(s) 57, 1181, 1385, 1535, 1835, 1979
BssECI CCNNGG 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 104, 1687
BstAFI CTTAAG 1 cut(s) 530
BstAPI GCANNNNNTGC 1 cut(s) 1631
BstDEI CTNAG 9 cut(s) 141, 413, 967, 1158, 1295, 1595, 1745, 1895, 2208
BstF5I GGATG 4 cut(s) 328, 410, 638, 1126
BstHHI GCGC 1 cut(s) 586
BstMAI GTCTC 1 cut(s) 727
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 3 cut(s) 174, 590, 874
BstSCI CCNGG 2 cut(s) 154, 816
BstSFI CTRYAG 6 cut(s) 604, 884, 1002, 1308, 1458, 1758
BstV1I GCAGC 7 cut(s) 126, 396, 853, 1110, 1311, 2157, 2183
BstX2I RGATCY 7 cut(s) 916, 1012, 1264, 1291, 1315, 1615, 1915
BstYI RGATCY 7 cut(s) 916, 1012, 1264, 1291, 1315, 1615, 1915
Bsu15I ATCGAT 1 cut(s) 24
Bsu36I CCTNAGG 2 cut(s) 1158, 2208
BsuTUI ATCGAT 1 cut(s) 24
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 4 cut(s) 328, 410, 638, 1126
BtsI GCAGTG 2 cut(s) 544, 807
BtsIMutI CAGTG 9 cut(s) 100, 421, 544, 807, 1392, 1542, 1692, 1842, 1986
BveI ACCTGC 6 cut(s) 43, 1315, 1465, 1639, 1765, 1915
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 3 cut(s) 729, 1066, 1768
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 9 cut(s) 89, 304, 1031, 1082, 1133, 1555, 1705, 1855, 1999
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 956
Csp6I GTAC 3 cut(s) 821, 1184, 1248
CviQI GTAC 3 cut(s) 821, 1184, 1248
DdeI CTNAG 9 cut(s) 141, 413, 967, 1158, 1295, 1595, 1745, 1895, 2208
EaeI YGGCCR 1 cut(s) 219
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 4 cut(s) 1536, 1593, 1658, 1958
Eco81I CCTNAGG 2 cut(s) 1158, 2208
Eco88I CYCGRG 1 cut(s) 978
EcoO109I RGGNCCY 5 cut(s) 89, 1555, 1705, 1855, 1999
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 727
FbaI TGATCA 2 cut(s) 325, 726
Fnu4HI GCNGC 8 cut(s) 115, 222, 410, 842, 1099, 1300, 2146, 2197
FokI GGATG 4 cut(s) 315, 417, 645, 1133
Fsp4HI GCNGC 8 cut(s) 115, 222, 410, 842, 1099, 1300, 2146, 2197
FspBI CTAG 7 cut(s) 296, 932, 1028, 2054, 2075, 2126, 2177
GlaI GCGC 1 cut(s) 585
GluI GCNGC 8 cut(s) 115, 222, 410, 842, 1099, 1300, 2146, 2197
GsuI CTGGAG 1 cut(s) 1098
HapII CCGG 3 cut(s) 59, 818, 1787
HgaI GACGC 1 cut(s) 956
HhaI GCGC 1 cut(s) 586
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 2 cut(s) 776, 833
HinfI GANTC 5 cut(s) 284, 1127, 1232, 1970, 2048
HpaII CCGG 3 cut(s) 59, 818, 1787
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 3 cut(s) 18, 107, 130
Hpy8I GTNNAC 3 cut(s) 18, 107, 130
HpyAV CCTTC 8 cut(s) 102, 293, 623, 697, 921, 1617, 1633, 1933
HpyCH4III ACNGT 2 cut(s) 104, 1687
HpyCH4IV ACGT 1 cut(s) 736
HpyF3I CTNAG 9 cut(s) 141, 413, 967, 1158, 1295, 1595, 1745, 1895, 2208
HpySE526I ACGT 1 cut(s) 736
HspAI GCGC 1 cut(s) 584
Kpn2I TCCGGA 1 cut(s) 1786
KpnI GGTACC 1 cut(s) 824
Ksp22I TGATCA 2 cut(s) 325, 726
LmnI GCTCC 5 cut(s) 574, 722, 1339, 1789, 2078
Lsp1109I GCAGC 7 cut(s) 126, 396, 853, 1110, 1311, 2157, 2183
LweI GCATC 5 cut(s) 550, 853, 914, 959, 973
MaeI CTAG 7 cut(s) 296, 932, 1028, 2054, 2075, 2126, 2177
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 1 cut(s) 2228
MbiI CCGCTC 2 cut(s) 1698, 1992
MflI RGATCY 7 cut(s) 916, 1012, 1264, 1291, 1315, 1615, 1915
MhlI GDGCHC 4 cut(s) 1451, 1601, 1751, 1901
MlyI GAGTC 1 cut(s) 1241
MmeI TCCRAC 1 cut(s) 744
MroI TCCGGA 1 cut(s) 1786
MseI TTAA 2 cut(s) 531, 2225
MslI CAYNNNNRTG 2 cut(s) 333, 728
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 3 cut(s) 59, 818, 1787
MspR9I CCNGG 2 cut(s) 156, 818
MvaI CCWGG 1 cut(s) 156
NciI CCSGG 1 cut(s) 818
NlaIV GGNNCC 6 cut(s) 57, 305, 822, 1557, 1707, 1857
NmuCI GTSAC 1 cut(s) 2228
NspI RCATGY 3 cut(s) 174, 590, 874
PaeR7I CTCGAG 1 cut(s) 978
PagI TCATGA 3 cut(s) 729, 1066, 1768
PfeI GAWTC 4 cut(s) 284, 1127, 1970, 2048
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 8 cut(s) 116, 223, 411, 843, 1100, 1301, 2147, 2198
PleI GAGTC 1 cut(s) 1240
PpsI GAGTC 1 cut(s) 1240
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 6 cut(s) 57, 305, 822, 1557, 1707, 1857
PspPI GGNCC 9 cut(s) 89, 304, 1031, 1082, 1133, 1555, 1705, 1855, 1999
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 4 cut(s) 1006, 1312, 1462, 1762
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 7 cut(s) 916, 1012, 1264, 1291, 1315, 1615, 1915
RsaI GTAC 3 cut(s) 822, 1185, 1249
RsaNI GTAC 3 cut(s) 821, 1184, 1248
RseI CAYNNNNRTG 2 cut(s) 333, 728
SaqAI TTAA 2 cut(s) 531, 2225
SatI GCNGC 8 cut(s) 115, 222, 410, 842, 1099, 1300, 2146, 2197
Sau96I GGNCC 9 cut(s) 89, 304, 1031, 1082, 1133, 1555, 1705, 1855, 1999
ScaI AGTACT 1 cut(s) 1249
SchI GAGTC 1 cut(s) 1241
ScrFI CCNGG 2 cut(s) 156, 818
SduI GDGCHC 4 cut(s) 1451, 1601, 1751, 1901
SfaNI GCATC 5 cut(s) 550, 853, 914, 959, 973
SfcI CTRYAG 6 cut(s) 604, 884, 1002, 1308, 1458, 1758
Sfr274I CTCGAG 1 cut(s) 978
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 978
SmiMI CAYNNNNRTG 2 cut(s) 333, 728
SmlI CTYRAG 3 cut(s) 530, 836, 978
SmoI CTYRAG 3 cut(s) 530, 836, 978
SsiI CCGC 4 cut(s) 222, 1698, 1910, 1992
SspMI CTAG 7 cut(s) 296, 932, 1028, 2054, 2075, 2126, 2177
StyD4I CCNGG 2 cut(s) 154, 816
TaaI ACNGT 2 cut(s) 104, 1687
TaiI ACGT 1 cut(s) 739
TaqI TCGA 4 cut(s) 24, 979, 2064, 2217
TatI WGTACW 1 cut(s) 1247
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 4 cut(s) 284, 1127, 1970, 2048
Tru1I TTAA 2 cut(s) 531, 2225
Tru9I TTAA 2 cut(s) 531, 2225
TscAI CASTG 9 cut(s) 107, 421, 551, 807, 1392, 1542, 1692, 1842, 1986
TseFI GTSAC 1 cut(s) 2228
TseI GCWGC 7 cut(s) 114, 409, 841, 1098, 1299, 2145, 2196
Tsp45I GTSAC 1 cut(s) 2228
TspGWI ACGGA 2 cut(s) 134, 780
TspRI CASTG 9 cut(s) 107, 421, 551, 807, 1392, 1542, 1692, 1842, 1986
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 4 cut(s) 271, 382, 508, 557
XceI RCATGY 3 cut(s) 174, 590, 874
XhoI CTCGAG 1 cut(s) 978
XspI CTAG 7 cut(s) 296, 932, 1028, 2054, 2075, 2126, 2177
ZrmI AGTACT 1 cut(s) 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.