Rh1BG088200

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004794
Physical Location & Seq
Reverse (-)
13972961 .. 13984184
11224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG088200.1

Sequence Viewer

Length: 1515 bp
ATGGTGGAGTATATCACCCAAAGAAGTGAGAATTTTGTTGCAGAATCTGTTATCCTAGAAGGGGGCCAAGATGGACAAGTATCTGATCATCCCTATGACGTTATTTCTGATTTTGTTGATGACTTTGCAAGTTCCAAGAGAAATTTGTTTAGTCGGGTTTCGGGATGGCTGCTGAGTGAAAAGAGAGAAGATAAAATAGATGATTTTGTTCAAGAGATGGAAATAAATGGGTTTTGGTTGGTTGATAAAAGAGAAACAATAGCACAGAATTTGCTAAAGAATGTCGACCTTAAGAATGAGCATCACTGCAATATGAAATTTCACACCCCAGAGGAGCTTGAAGCGCATGTTCTAAAGTGTAGCTATAGGTCTATGAGTTGCATACATGAAGGATGTAATGCCATATTTTGTGCAAGTCAGGTGGATAAACATGATGCAGTTTGCCCCTTCAAGATAATTCCATGCGAACAAAACTGCTCCGACATGATCATGAGACGTGAAATGGACAGACATTGTATTACCATCTGTCCAATGAAGCTTGTTAGTTGTCCTTTCTATGCAGTGGGTTGTCAATCCCCGGTACCACATTGTAAGCTTGAGCAGCATCGTTCAGATGATCTCCATTCTCACATGCTGTTTGTTCTACAAAGTATTCATAAGGAAGCATCTATGGAAGATCTGAAAAGAAGGCTGGAGCAACTAAAAGACGCATCTTCATCCAATAACTTAGCACATGCTCGAGATGTGAGATCACTAACCTCTGCAGTCAAGGATCTTGAAGCAAAACTAGGGCCGATGGAAATTAGCAGGAAACACCATGAGGATCTTGAAGCAGAACATGGGCCAGAGGAAGTAGGCAGCAAAAGCAAAACTCCAGAGGATGTGGAATCAGGGCCAAAAGAAGTGAGTAATAAACCTGAGGAGGACTTTGAAGTAAAACCAGCACCAAAGGTAGTTAGCCAACAATCGGAGTATCTTGAAGCAAAATCAGAGCCAAAGGAAGTTAGTACTAAATCTGTGGAGGATCTTGAAGCTAAACCAGCACCAAAGGAACTGAGCACCAAACCTGCAGAAGATCGTGAAGCAAAACCAGCTCCAAAAGAAGTCACTAGTTCAAAACCCCCGGAAGATGTTGAAGCAAGGTCAGTGGGAGTGAGCAGTAAGGCCCCAACAGGACATGAAGAAAAATTAGGGACAAAGGAAGTGAGAAGCGAATTGCCAGAGGAGCTCGAAACAGAACTAGGAACAAAGGAAGTGGGAAGCAAACCACCAGAGGAACTTGAAACACAACTAGGAATCAAGGAAGTGAGCAGCAAACTTCAACAGGAACTTGAAACAAAACTAGGAAGAAAAGAGGTAGGCAGCAAAACCCCAGAAGGATACAAAAGACAATTAGTAACAAAGGATGTCAACAGCAAACCCGAGGAACTTAAAAAAGAACTAGGGACAAAGGAAGTGAGCATCAAACCCCCAGAGGAACTCGAGAAATTAAGTGACAAAGGAAGTGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

504

Amino Acids

56.71

Weight (kDa)

5.23

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 144 - 202 5e-11 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1075
Acc65I GGTACC 1 cut(s) 580
AccB1I GGYRCC 1 cut(s) 580
AccI GTMKAC 1 cut(s) 285
AclWI GGATC 3 cut(s) 780, 831, 1032
AcsI RAATTY 4 cut(s) 31, 142, 268, 317
AfaI GTAC 2 cut(s) 582, 1009
AfiI CCNNNNNNNGG 2 cut(s) 61, 967
AflII CTTAAG 1 cut(s) 290
AhlI ACTAGT 1 cut(s) 1109
AjiI CACGTC 1 cut(s) 497
AluBI AGCT 7 cut(s) 337, 363, 538, 595, 1034, 1094, 1228
AluI AGCT 7 cut(s) 337, 363, 538, 595, 1034, 1094, 1228
Alw21I GWGCWC 2 cut(s) 1061, 1230
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 3 cut(s) 780, 831, 1032
AlwNI CAGNNNCTG 1 cut(s) 47
Ama87I CYCGRG 3 cut(s) 738, 1421, 1481
AoxI GGCC 5 cut(s) 64, 791, 842, 893, 1164
ApeKI GCWGC 5 cut(s) 169, 601, 858, 1311, 1362
ApoI RAATTY 4 cut(s) 31, 142, 268, 317
Asp718I GGTACC 1 cut(s) 580
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 5 cut(s) 64, 791, 842, 893, 1165
AsuC2I CCSGG 2 cut(s) 578, 1124
AsuHPI GGTGA 1 cut(s) 7
AvaI CYCGRG 3 cut(s) 738, 1421, 1481
AxyI CCTNAGG 1 cut(s) 918
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 1230
Bbv12I GWGCWC 2 cut(s) 1061, 1230
BbvI GCAGC 5 cut(s) 156, 613, 870, 1323, 1374
BccI CCATC 5 cut(s) 65, 159, 211, 530, 790
BciVI GTATCC 1 cut(s) 1373
BclI TGATCA 2 cut(s) 85, 486
BcnI CCSGG 2 cut(s) 578, 1124
BcoDI GTCTC 1 cut(s) 487
BcuI ACTAGT 1 cut(s) 1109
BfaI CTAG 7 cut(s) 56, 788, 1110, 1241, 1292, 1343, 1442
BfmI CTRYAG 3 cut(s) 364, 762, 1068
BfrI CTTAAG 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 1075
BfuI GTATCC 1 cut(s) 1373
BglII AGATCT 1 cut(s) 676
BisI GCNGC 5 cut(s) 170, 602, 859, 1312, 1363
BlsI GCNGC 5 cut(s) 171, 603, 860, 1313, 1364
BmcAI AGTACT 1 cut(s) 1009
Bme1390I CCNGG 2 cut(s) 578, 1124
BmeT110I CYCGRG 3 cut(s) 738, 1421, 1481
BmgBI CACGTC 1 cut(s) 497
BmgT120I GGNCC 5 cut(s) 64, 791, 842, 893, 1165
BmiI GGNNCC 3 cut(s) 65, 582, 1167
BmrFI CCNGG 2 cut(s) 578, 1124
BmsI GCATC 6 cut(s) 310, 424, 613, 674, 719, 1470
BpmI CTGGAG 2 cut(s) 713, 858
BpuEI CTTGAG 1 cut(s) 617
BpuMI CCSGG 2 cut(s) 578, 1124
BsaJI CCNNGG 3 cut(s) 576, 1122, 1422
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 967
Bse21I CCTNAGG 1 cut(s) 918
BseDI CCNNGG 3 cut(s) 576, 1122, 1422
BseGI GGATG 6 cut(s) 88, 170, 398, 716, 886, 1411
BseLI CCNNNNNNNGG 2 cut(s) 61, 967
BseMII CTCAG 3 cut(s) 164, 909, 1046
BseRI GAGGAG 3 cut(s) 347, 935, 1238
BseXI GCAGC 5 cut(s) 156, 613, 870, 1323, 1374
BshFI GGCC 5 cut(s) 66, 793, 844, 895, 1166
BshNI GGYRCC 1 cut(s) 580
BsiHKAI GWGCWC 2 cut(s) 1061, 1230
BsiHKCI CYCGRG 3 cut(s) 738, 1421, 1481
BsiSI CCGG 2 cut(s) 578, 1124
BslFI GGGAC 2 cut(s) 1207, 1459
BslI CCNNNNNNNGG 2 cut(s) 61, 967
BsmAI GTCTC 1 cut(s) 487
BsmBI CGTCTC 1 cut(s) 487
BsmFI GGGAC 2 cut(s) 1207, 1459
BsnI GGCC 5 cut(s) 66, 793, 844, 895, 1166
BsoBI CYCGRG 3 cut(s) 738, 1421, 1481
Bsp1286I GDGCHC 2 cut(s) 1061, 1230
Bsp143I GATC 9 cut(s) 85, 486, 616, 676, 749, 772, 823, 1024, 1075
BspANI GGCC 5 cut(s) 66, 793, 844, 895, 1166
BspCNI CTCAG 3 cut(s) 165, 910, 1047
BspHI TCATGA 1 cut(s) 489
BspLI GGNNCC 3 cut(s) 65, 582, 1167
BspMAI CTGCAG 2 cut(s) 766, 1072
BspMI ACCTGC 1 cut(s) 1075
BspPI GGATC 3 cut(s) 780, 831, 1032
BspT107I GGYRCC 1 cut(s) 580
BspTI CTTAAG 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 576, 1122, 1422
BssMI GATC 9 cut(s) 85, 486, 616, 676, 749, 772, 823, 1024, 1075
BstAFI CTTAAG 1 cut(s) 290
BstDEI CTNAG 4 cut(s) 173, 727, 918, 1055
BstF5I GGATG 6 cut(s) 88, 170, 398, 716, 886, 1411
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 9 cut(s) 88, 489, 619, 679, 752, 775, 826, 1027, 1078
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 9 cut(s) 85, 486, 616, 676, 749, 772, 823, 1024, 1075
BstMWI GCNNNNNNNGC 6 cut(s) 343, 601, 864, 1040, 1091, 1225
BstNSI RCATGY 3 cut(s) 350, 634, 737
BstSCI CCNGG 2 cut(s) 576, 1122
BstSFI CTRYAG 3 cut(s) 364, 762, 1068
BstV1I GCAGC 5 cut(s) 156, 613, 870, 1323, 1374
BstX2I RGATCY 4 cut(s) 676, 772, 823, 1024
BstYI RGATCY 4 cut(s) 676, 772, 823, 1024
Bsu36I CCTNAGG 1 cut(s) 918
BsuI GTATCC 1 cut(s) 1373
BsuRI GGCC 5 cut(s) 66, 793, 844, 895, 1166
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 6 cut(s) 88, 170, 398, 716, 886, 1411
BtsI GCAGTG 2 cut(s) 304, 567
BtsIMutI CAGTG 3 cut(s) 304, 567, 1152
BveI ACCTGC 1 cut(s) 1075
CaiI CAGNNNCTG 1 cut(s) 47
CciI TCATGA 1 cut(s) 489
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 5 cut(s) 64, 791, 842, 893, 1165
CseI GACGC 1 cut(s) 716
Csp6I GTAC 2 cut(s) 581, 1008
CspCI CAANNNNNGTGG 6 cut(s) 402, 437, 1128, 1163, 1236, 1271
CviQI GTAC 2 cut(s) 581, 1008
DdeI CTNAG 4 cut(s) 173, 727, 918, 1055
DpnI GATC 9 cut(s) 87, 488, 618, 678, 751, 774, 825, 1026, 1077
DpnII GATC 9 cut(s) 85, 486, 616, 676, 749, 772, 823, 1024, 1075
Ecl136II GAGCTC 1 cut(s) 1228
Eco24I GRGCYC 1 cut(s) 1230
Eco53kI GAGCTC 1 cut(s) 1228
Eco81I CCTNAGG 1 cut(s) 918
Eco88I CYCGRG 3 cut(s) 738, 1421, 1481
EcoICRI GAGCTC 1 cut(s) 1228
EcoO109I RGGNCCY 1 cut(s) 1165
EcoT38I GRGCYC 1 cut(s) 1230
Esp3I CGTCTC 1 cut(s) 487
FaqI GGGAC 2 cut(s) 1207, 1459
FbaI TGATCA 2 cut(s) 85, 486
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 5 cut(s) 170, 602, 859, 1312, 1363
FokI GGATG 6 cut(s) 75, 177, 405, 703, 893, 1418
FriOI GRGCYC 1 cut(s) 1230
Fsp4HI GCNGC 5 cut(s) 170, 602, 859, 1312, 1363
FspBI CTAG 7 cut(s) 56, 788, 1110, 1241, 1292, 1343, 1442
GlaI GCGC 1 cut(s) 345
GluI GCNGC 5 cut(s) 170, 602, 859, 1312, 1363
GsuI CTGGAG 2 cut(s) 713, 858
HaeIII GGCC 5 cut(s) 66, 793, 844, 895, 1166
HapII CCGG 2 cut(s) 578, 1124
HgaI GACGC 1 cut(s) 716
HhaI GCGC 1 cut(s) 346
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 2 cut(s) 286, 1411
HindII GTYRAC 2 cut(s) 286, 1411
HindIII AAGCTT 2 cut(s) 536, 593
HinfI GANTC 3 cut(s) 44, 887, 1296
HpaII CCGG 2 cut(s) 578, 1124
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 286, 1411
Hpy188I TCNGA 7 cut(s) 85, 109, 481, 613, 681, 970, 991
Hpy8I GTNNAC 2 cut(s) 286, 1411
HpyAV CCTTC 5 cut(s) 53, 383, 457, 681, 1370
HpyCH4IV ACGT 2 cut(s) 99, 496
HpyCH4V TGCA 9 cut(s) 41, 128, 309, 381, 413, 437, 560, 764, 1070
HpyF10VI GCNNNNNNNGC 6 cut(s) 343, 601, 864, 1040, 1091, 1225
HpyF3I CTNAG 4 cut(s) 173, 727, 918, 1055
HpySE526I ACGT 2 cut(s) 99, 496
HspAI GCGC 1 cut(s) 344
KpnI GGTACC 1 cut(s) 584
Ksp22I TGATCA 2 cut(s) 85, 486
Kzo9I GATC 9 cut(s) 85, 486, 616, 676, 749, 772, 823, 1024, 1075
LmnI GCTCC 5 cut(s) 334, 482, 694, 1099, 1225
Lsp1109I GCAGC 5 cut(s) 156, 613, 870, 1323, 1374
LweI GCATC 6 cut(s) 310, 424, 613, 674, 719, 1470
MaeI CTAG 7 cut(s) 56, 788, 1110, 1241, 1292, 1343, 1442
MaeII ACGT 2 cut(s) 99, 496
MaeIII GTNAC 3 cut(s) 1105, 1396, 1493
MalI GATC 9 cut(s) 87, 488, 618, 678, 751, 774, 825, 1026, 1077
MboI GATC 9 cut(s) 85, 486, 616, 676, 749, 772, 823, 1024, 1075
MboII GAAGA 7 cut(s) 200, 686, 705, 1085, 1139, 1193, 1359
MflI RGATCY 4 cut(s) 676, 772, 823, 1024
MhlI GDGCHC 2 cut(s) 1061, 1230
MmeI TCCRAC 1 cut(s) 504
MseI TTAA 3 cut(s) 291, 1431, 1490
MslI CAYNNNNRTG 2 cut(s) 93, 488
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 2 cut(s) 578, 1124
MspR9I CCNGG 2 cut(s) 578, 1124
MwoI GCNNNNNNNGC 6 cut(s) 343, 601, 864, 1040, 1091, 1225
NciI CCSGG 2 cut(s) 578, 1124
NdeII GATC 9 cut(s) 85, 486, 616, 676, 749, 772, 823, 1024, 1075
NlaIV GGNNCC 3 cut(s) 65, 582, 1167
NmuCI GTSAC 2 cut(s) 1105, 1493
NspI RCATGY 3 cut(s) 350, 634, 737
PaeR7I CTCGAG 2 cut(s) 738, 1481
PagI TCATGA 1 cut(s) 489
PfeI GAWTC 3 cut(s) 44, 887, 1296
PkrI GCNGC 5 cut(s) 171, 603, 860, 1313, 1364
Psp124BI GAGCTC 1 cut(s) 1230
PspN4I GGNNCC 3 cut(s) 65, 582, 1167
PspPI GGNCC 5 cut(s) 64, 791, 842, 893, 1165
PstI CTGCAG 2 cut(s) 766, 1072
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 4 cut(s) 676, 772, 823, 1024
RsaI GTAC 2 cut(s) 582, 1009
RsaNI GTAC 2 cut(s) 581, 1008
RseI CAYNNNNRTG 2 cut(s) 93, 488
SacI GAGCTC 1 cut(s) 1230
SalI GTCGAC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 291, 1431, 1490
SatI GCNGC 5 cut(s) 170, 602, 859, 1312, 1363
Sau3AI GATC 9 cut(s) 85, 486, 616, 676, 749, 772, 823, 1024, 1075
Sau96I GGNCC 5 cut(s) 64, 791, 842, 893, 1165
ScaI AGTACT 1 cut(s) 1009
ScrFI CCNGG 2 cut(s) 578, 1124
SduI GDGCHC 2 cut(s) 1061, 1230
SfaNI GCATC 6 cut(s) 310, 424, 613, 674, 719, 1470
SfcI CTRYAG 3 cut(s) 364, 762, 1068
Sfr274I CTCGAG 2 cut(s) 738, 1481
SlaI CTCGAG 2 cut(s) 738, 1481
SmiMI CAYNNNNRTG 2 cut(s) 93, 488
SmlI CTYRAG 4 cut(s) 290, 596, 738, 1481
SmoI CTYRAG 4 cut(s) 290, 596, 738, 1481
SpeI ACTAGT 1 cut(s) 1109
SspMI CTAG 7 cut(s) 56, 788, 1110, 1241, 1292, 1343, 1442
SstI GAGCTC 1 cut(s) 1230
StyD4I CCNGG 2 cut(s) 576, 1122
TaiI ACGT 2 cut(s) 102, 499
TaqI TCGA 4 cut(s) 285, 739, 1230, 1482
TatI WGTACW 1 cut(s) 1007
TfiI GAWTC 3 cut(s) 44, 887, 1296
Tru1I TTAA 3 cut(s) 291, 1431, 1490
Tru9I TTAA 3 cut(s) 291, 1431, 1490
TscAI CASTG 3 cut(s) 311, 567, 1152
TseFI GTSAC 2 cut(s) 1105, 1493
TseI GCWGC 5 cut(s) 169, 601, 858, 1311, 1362
Tsp45I GTSAC 2 cut(s) 1105, 1493
TspDTI ATGAA 6 cut(s) 329, 402, 548, 644, 705, 1194
TspRI CASTG 3 cut(s) 311, 567, 1152
Vha464I CTTAAG 1 cut(s) 290
XapI RAATTY 4 cut(s) 31, 142, 268, 317
XceI RCATGY 3 cut(s) 350, 634, 737
XhoI CTCGAG 2 cut(s) 738, 1481
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 7 cut(s) 56, 788, 1110, 1241, 1292, 1343, 1442
ZrmI AGTACT 1 cut(s) 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.