Rorug01G0092700

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004794
Physical Location & Seq
Reverse (-)
15113233 .. 15115694
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0092700.1

Sequence Viewer

Length: 2307 bp
ATGGCTCGATCAACACTGTGCTCATTATTTGTCATCTTCTTGTTTCATCTTGTGCTTGCTTACTCTTTATCCTCATTGCAGCCATCTCGCCATGATGAGGAGTGCACTGCCTTGCTCCAATTCAAGCAAAGCTTTATTGTCAATCCATCTGTTTCTTATTATATTCTTTCTCATCCAAAGAATATTTTATCGTGGAAACTCGATAACAATAGTTGCTGCTCATGGGATGGCGTTGAGTGTGATGAGAAGACTGGTCATGTGATTGGTCTTGATCTGAGCAGCAGTTGGCTCCATGGCTCGATCGATTCCAGCAGCACGCTCTTCCATCTTGTTCATCTTCAACGGCTGAATCTGGCTGACAATAACCTCAGTTACTCTCAAATTCCTAATGTCATTAGAAATTTTCCAGAGCTCACGTATCTCAACCTCTCTAGCTCTTCCTTTTCCGGTCAAATCCCATCTGAATTTTGGCAGTTGTCCAAGCTGTTAATCCTAGACTTTTCAAGGAACCACTTTAATGGTCCAATCTCTGGTTCGTTGGCAAACCTTACCCAGCTGACTACTCTTTCAGTTTGTGAGAACCAATTAACTGGTCCAATTCCTGAGTCCTTATCCAATCTCACGAATCTCCTTACCCTTTATCTAAACAGTAATAGTTTCACTGGCACAATAGACTTCAACATGTTTCATAAGCTTCAAAATCTTGCCTTCCTCGATCTATCCAGTAACAATTTGGAATTGCTTGACACAAGAATTGTGAATTCTACAATTTCAAGGTTTCAATTTCTGGGATTGGGTTCATGCAACATAAGAGAGTTCCCCAAGTTCCTACAATATCAAAAAACACTGTTGTACTTGGATCTTTCTGCAAACAAAATGCAAGGCCAAGTACCAAAATGGATATGGAACACGAGCACCGAAAGTTTGGTGTTCATGAACATTTCCAATAACTTCCTTTCTGGCTTTGATCAACCTCCGGCTTTACTTCCCTGGGGCAACCTACGAGTGCTAGATTTTTCATCCAACATGCTACAAGGATCACTACCCATTCCTGGACCAAACATCGCCTACTTTCAGATTTCAAACAACAAGCTGACTGGAGAAGTTTCACCAGTGTTTTGTAATTTGAGATCTATTCAGTACCTTGATTTGTCAGATAACAGGCTGAGTGGCATACTACCGCAGTGTCTCGGGAACCTGAGTGATAAGCTGGAAATTGTAAAGCTTCGAAACAATTCTTTTCATGGCTTGCTTCCTCACACATGCAAGATGGGAAACTCGCTAAGAATGCTTGATGTTAGTAATAACAAATTGCATGGTAAATTGCCGACGTCCTTAGCAGATTGTTGGAAGCTTGAGTTTATTGTTCTTTCGAGCAATGACTTCAATGATGTTTTCCCAGTTTGGTTGGGGACACTCCAAGAGTTAAAGCTTCTGGCTATGCGCAATAATGGATTCCATGGTGTGATTGAGAATCAACAAAACAATTCTGGGTTCCTGTACGCTCCTGTCAGGTTCCCCAATTTGCTTGTTCTTGATCTATCTCAAAATAATTTTGCTGGTAAGTTCCCACCTGAGTACATCTTTTCAGGAAATTCTATGAGAGGTTTCACTCCTTTCCAGTCTACATATTTGCAGGCAAAAACAAATATTATTAGTGAATATTTTTTTGCAACTTATTACGAATGTTATTCAACCACCATAACAAGCAAAGGTGTGGAGAGATACTATCCACAGATCCAGGAGGACTTTGGAATAATAGATATTTCAAACAACAGATTTGAAGACAAGATTCCTGACTTCATTGGGAACCTAAAGGGGCTTCGCTTTCTGAATGTTTCGAACAACATTTTAACTGGTGGCATCCCAGCGTCCCTGGGGGACTTGACACAGCTCGAGTCATTGGACCTTTCACAAAACAAGCTCTCAGGAGAGATTCCTCCACAACTGACGCGGCTTACGTCCCTTGCAGCTCTAAACGTCTCACACAACGATCTCACAGGTTTTATACCGCAAGGGCAACAGTTTAATACATTTGAAAGCCCTTCATATGAGGGGAACAAAGGATTATGTGGAAATCCATTGCCAAAGAAATGTGGAGATTCTGCTGCCCCGCAGTTACCACCTCCGACCCAAGAGGAAAGTAATTCCGGCGCCTCTGTTTTTGAATTTGACTGGAAATTTGTTTTGGCTGGATTTGGAAGTGGTTTGGTGGTAGGAATAGTTGTTGCAGACGTCGTGATCTCATGGAGGCATAAGCTATTCACTACAGTTGTTGGAATATTGATCAGATTAATGAGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

768

Amino Acids

85.89

Weight (kDa)

6.03

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 32 - 81 3.3e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 104 - 295 2.3e-11 Leucine-rich repeat region
LRR_8 PF13855 185 - 245 7.4e-08 Leucine rich repeat
LRR_8 PF13855 403 - 462 4.3e-07 Leucine rich repeat
LRR_8 PF13855 587 - 642 8e-07 Leucine rich repeat
LRR_14 PF23598 600 - 664 2.1e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 1334, 2238
Acc16I TGCGCA 1 cut(s) 1445
AccB1I GGYRCC 1 cut(s) 2153
AccB7I CCANNNNNTGG 1 cut(s) 530
AccI GTMKAC 1 cut(s) 1625
AccII CGCG 1 cut(s) 1954
AciI CCGC 4 cut(s) 1181, 1954, 2012, 2114
AclWI GGATC 3 cut(s) 867, 1045, 1732
AcsI RAATTY 7 cut(s) 381, 400, 464, 760, 1594, 2168, 2180
AcyI GRCGYC 3 cut(s) 1331, 2154, 2235
AfaI GTAC 5 cut(s) 854, 891, 1142, 1502, 1580
AfiI CCNNNNNNNGG 3 cut(s) 97, 530, 1052
AflIII ACRYGT 1 cut(s) 681
AjnI CCWGG 4 cut(s) 989, 1051, 1740, 1875
AjuI GAANNNNNNNTTGG 4 cut(s) 517, 549, 2171, 2203
Alw21I GWGCWC 4 cut(s) 23, 107, 414, 917
Alw26I GTCTC 2 cut(s) 1193, 1987
Alw44I GTGCAC 1 cut(s) 103
AlwI GGATC 3 cut(s) 867, 1045, 1732
Ama87I CYCGRG 2 cut(s) 1190, 1895
AoxI GGCC 1 cut(s) 883
ApaLI GTGCAC 1 cut(s) 103
ApeKI GCWGC 6 cut(s) 79, 216, 279, 312, 1970, 2108
ApoI RAATTY 7 cut(s) 381, 400, 464, 760, 1594, 2168, 2180
ArsI GACNNNNNNTTYG 2 cut(s) 2165, 2197
AseI ATTAAT 1 cut(s) 2294
Asp700I GAANNNNTTC 1 cut(s) 1234
AspLEI GCGC 2 cut(s) 1446, 2156
AspS9I GGNCC 4 cut(s) 521, 593, 1055, 1906
AsuHPI GGTGA 1 cut(s) 1101
AsuII TTCGAA 2 cut(s) 1228, 1841
AvaI CYCGRG 2 cut(s) 1190, 1895
AvaII GGWCC 4 cut(s) 521, 593, 1055, 1906
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 2153
BanII GRGCYC 1 cut(s) 414
BauI CACGAG 1 cut(s) 910
BbsI GAAGAC 2 cut(s) 254, 1791
Bbv12I GWGCWC 4 cut(s) 23, 107, 414, 917
BbvI GCAGC 6 cut(s) 91, 203, 291, 324, 1982, 2095
BccI CCATC 6 cut(s) 91, 154, 221, 333, 466, 1264
BceAI ACGGC 1 cut(s) 359
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 4 cut(s) 991, 1053, 1742, 1877
BclI TGATCA 2 cut(s) 967, 2286
BcoDI GTCTC 2 cut(s) 1193, 1987
BfaI CTAG 3 cut(s) 432, 494, 1010
BfmI CTRYAG 1 cut(s) 2268
BfoI RGCGCY 1 cut(s) 2157
BglII AGATCT 1 cut(s) 1130
BisI GCNGC 7 cut(s) 80, 217, 280, 313, 1955, 1971, 2109
BlsI GCNGC 7 cut(s) 81, 218, 281, 314, 1956, 1972, 2110
Bme1390I CCNGG 4 cut(s) 991, 1053, 1742, 1877
Bme18I GGWCC 4 cut(s) 521, 593, 1055, 1906
BmeT110I CYCGRG 2 cut(s) 1190, 1895
BmgT120I GGNCC 4 cut(s) 521, 593, 1055, 1906
BmiI GGNNCC 7 cut(s) 290, 509, 1196, 1496, 1517, 1811, 2155
BmrFI CCNGG 4 cut(s) 991, 1053, 1742, 1877
BmrI ACTGGG 1 cut(s) 1394
BmsI GCATC 1 cut(s) 1872
BmuI ACTGGG 1 cut(s) 1394
BpiI GAAGAC 2 cut(s) 254, 1791
BpmI CTGGAG 1 cut(s) 1119
Bpu10I CCTNAGC 1 cut(s) 1336
Bpu14I TTCGAA 2 cut(s) 1228, 1841
BpuEI CTTGAG 1 cut(s) 1376
Bsa29I ATCGAT 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 417
BsaHI GRCGYC 3 cut(s) 1331, 2154, 2235
BsaJI CCNNGG 6 cut(s) 292, 989, 990, 1459, 1875, 1876
BsaWI WCCGGW 1 cut(s) 446
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 530, 1052
Bse3DI GCAATG 3 cut(s) 74, 1384, 2081
BseBI CCWGG 4 cut(s) 991, 1053, 1742, 1877
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 6 cut(s) 292, 989, 990, 1459, 1875, 1876
BseGI GGATG 4 cut(s) 172, 232, 1019, 1863
BseLI CCNNNNNNNGG 3 cut(s) 97, 530, 1052
BseMI GCAATG 3 cut(s) 74, 1384, 2081
BseMII CTCAG 7 cut(s) 266, 382, 594, 1157, 1190, 1566, 1941
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 6 cut(s) 91, 203, 291, 324, 1982, 2095
BseYI CCCAGC 2 cut(s) 552, 1867
Bsh1236I CGCG 1 cut(s) 1954
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 885
BshNI GGYRCC 1 cut(s) 2153
BshVI ATCGAT 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 4 cut(s) 23, 107, 414, 917
BsiHKCI CYCGRG 2 cut(s) 1190, 1895
BsiSI CCGG 3 cut(s) 447, 977, 2151
BslFI GGGAC 4 cut(s) 1426, 1858, 1895, 1948
BslI CCNNNNNNNGG 3 cut(s) 97, 530, 1052
BsmAI GTCTC 2 cut(s) 1193, 1987
BsmBI CGTCTC 1 cut(s) 1987
BsmFI GGGAC 4 cut(s) 1426, 1858, 1895, 1948
BsmI GAATGC 1 cut(s) 1293
BsnI GGCC 1 cut(s) 885
BsoBI CYCGRG 2 cut(s) 1190, 1895
Bsp119I TTCGAA 2 cut(s) 1228, 1841
Bsp1286I GDGCHC 4 cut(s) 23, 107, 414, 917
Bsp19I CCATGG 2 cut(s) 292, 1459
BspACI CCGC 4 cut(s) 1181, 1954, 2012, 2114
BspANI GGCC 1 cut(s) 885
BspCNI CTCAG 7 cut(s) 267, 381, 595, 1158, 1191, 1567, 1940
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 1 cut(s) 1954
BspHI TCATGA 1 cut(s) 933
BspLI GGNNCC 7 cut(s) 290, 509, 1196, 1496, 1517, 1811, 2155
BspPI GGATC 3 cut(s) 867, 1045, 1732
BspQI GCTCTTC 2 cut(s) 326, 442
BspT104I TTCGAA 2 cut(s) 1228, 1841
BspT107I GGYRCC 1 cut(s) 2153
BsrDI GCAATG 3 cut(s) 74, 1384, 2081
BssECI CCNNGG 6 cut(s) 292, 989, 990, 1459, 1875, 1876
BssNI GRCGYC 3 cut(s) 1331, 2154, 2235
BssSI CACGAG 1 cut(s) 910
BssT1I CCWWGG 2 cut(s) 292, 1459
Bst2BI CACGAG 1 cut(s) 910
Bst2UI CCWGG 4 cut(s) 991, 1053, 1742, 1877
Bst4CI ACNGT 5 cut(s) 18, 650, 849, 2025, 2272
Bst6I CTCTTC 2 cut(s) 326, 442
BstACI GRCGYC 3 cut(s) 1331, 2154, 2235
BstBAI YACGTR 1 cut(s) 417
BstBI TTCGAA 2 cut(s) 1228, 1841
BstC8I GCNNGC 4 cut(s) 57, 317, 1250, 1638
BstDEI CTNAG 9 cut(s) 275, 368, 603, 1166, 1199, 1283, 1336, 1575, 1927
BstDSI CCRYGG 2 cut(s) 292, 1459
BstF5I GGATG 4 cut(s) 172, 232, 1019, 1863
BstFNI CGCG 1 cut(s) 1954
BstH2I RGCGCY 1 cut(s) 2157
BstHHI GCGC 2 cut(s) 1446, 2156
BstMAI GTCTC 2 cut(s) 1193, 1987
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 1288
BstNI CCWGG 4 cut(s) 991, 1053, 1742, 1877
BstNSI RCATGY 3 cut(s) 685, 1030, 1266
BstSCI CCNGG 4 cut(s) 989, 1051, 1740, 1875
BstSFI CTRYAG 1 cut(s) 2268
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 1 cut(s) 1954
BstV1I GCAGC 6 cut(s) 91, 203, 291, 324, 1982, 2095
BstV2I GAAGAC 2 cut(s) 254, 1791
BstX2I RGATCY 3 cut(s) 859, 1130, 1737
BstXI CCANNNNNNTGG 2 cut(s) 518, 590
BstYI RGATCY 3 cut(s) 859, 1130, 1737
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 1 cut(s) 885
BsuTUI ATCGAT 1 cut(s) 303
BtgI CCRYGG 2 cut(s) 292, 1459
BtgZI GCGATG 1 cut(s) 1048
BtsCI GGATG 4 cut(s) 172, 232, 1019, 1863
BtsI GCAGTG 2 cut(s) 105, 1190
BtsIMutI CAGTG 6 cut(s) 14, 105, 660, 845, 1119, 1190
Cac8I GCNNGC 4 cut(s) 57, 317, 1250, 1638
CciI TCATGA 1 cut(s) 933
CfoI GCGC 2 cut(s) 1446, 2156
Cfr13I GGNCC 4 cut(s) 521, 593, 1055, 1906
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 2 cut(s) 1860, 1960
Csp6I GTAC 5 cut(s) 853, 890, 1141, 1501, 1579
CviQI GTAC 5 cut(s) 853, 890, 1141, 1501, 1579
DdeI CTNAG 9 cut(s) 275, 368, 603, 1166, 1199, 1283, 1336, 1575, 1927
DinI GGCGCC 1 cut(s) 2155
Eam1104I CTCTTC 2 cut(s) 326, 442
EarI CTCTTC 2 cut(s) 326, 442
Ecl136II GAGCTC 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 292, 1459
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 4 cut(s) 521, 593, 1055, 1906
Eco53kI GAGCTC 1 cut(s) 412
Eco88I CYCGRG 2 cut(s) 1190, 1895
EcoICRI GAGCTC 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 760
EcoRII CCWGG 4 cut(s) 989, 1051, 1740, 1875
EcoT14I CCWWGG 2 cut(s) 292, 1459
EcoT38I GRGCYC 1 cut(s) 414
EgeI GGCGCC 1 cut(s) 2155
EheI GGCGCC 1 cut(s) 2155
ErhI CCWWGG 2 cut(s) 292, 1459
Esp3I CGTCTC 1 cut(s) 1987
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 4 cut(s) 1426, 1858, 1895, 1948
FauI CCCGC 1 cut(s) 2121
FauNDI CATATG 1 cut(s) 2050
FbaI TGATCA 2 cut(s) 967, 2286
FblI GTMKAC 1 cut(s) 1625
Fnu4HI GCNGC 7 cut(s) 80, 217, 280, 313, 1955, 1971, 2109
FokI GGATG 4 cut(s) 159, 239, 1006, 1850
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 7 cut(s) 80, 217, 280, 313, 1955, 1971, 2109
FspBI CTAG 3 cut(s) 432, 494, 1010
FspI TGCGCA 1 cut(s) 1445
GlaI GCGC 2 cut(s) 1445, 2155
GluI GCNGC 7 cut(s) 80, 217, 280, 313, 1955, 1971, 2109
GsaI CCCAGC 2 cut(s) 556, 1871
GsuI CTGGAG 1 cut(s) 1119
HaeII RGCGCY 1 cut(s) 2157
HaeIII GGCC 1 cut(s) 885
HapII CCGG 3 cut(s) 447, 977, 2151
HgaI GACGC 2 cut(s) 1860, 1960
HhaI GCGC 2 cut(s) 1446, 2156
Hin1I GRCGYC 3 cut(s) 1331, 2154, 2235
Hin6I GCGC 2 cut(s) 1444, 2154
HinP1I GCGC 2 cut(s) 1444, 2154
HindIII AAGCTT 5 cut(s) 130, 692, 1223, 1352, 1430
HpaII CCGG 3 cut(s) 447, 977, 2151
HphI GGTGA 1 cut(s) 1101
Hpy166II GTNNAC 2 cut(s) 105, 1626
Hpy188I TCNGA 7 cut(s) 276, 463, 1077, 1156, 1833, 2130, 2291
Hpy8I GTNNAC 2 cut(s) 105, 1626
Hpy99I CGWCG 2 cut(s) 1333, 2240
HpyAV CCTTC 2 cut(s) 718, 2055
HpyCH4III ACNGT 5 cut(s) 18, 650, 849, 2025, 2272
HpyCH4IV ACGT 5 cut(s) 416, 1331, 1961, 1980, 2235
HpyF10VI GCNNNNNNNGC 1 cut(s) 1288
HpyF3I CTNAG 9 cut(s) 275, 368, 603, 1166, 1199, 1283, 1336, 1575, 1927
HpySE526I ACGT 5 cut(s) 416, 1331, 1961, 1980, 2235
Hsp92I GRCGYC 3 cut(s) 1331, 2154, 2235
HspAI GCGC 2 cut(s) 1444, 2154
KasI GGCGCC 1 cut(s) 2153
Ksp22I TGATCA 2 cut(s) 967, 2286
LguI GCTCTTC 2 cut(s) 326, 442
LmnI GCTCC 3 cut(s) 120, 294, 1510
Lsp1109I GCAGC 6 cut(s) 91, 203, 291, 324, 1982, 2095
LweI GCATC 1 cut(s) 1872
MaeI CTAG 3 cut(s) 432, 494, 1010
MaeII ACGT 5 cut(s) 416, 1331, 1961, 1980, 2235
MaeIII GTNAC 3 cut(s) 371, 725, 2118
MboII GAAGA 6 cut(s) 28, 259, 313, 329, 429, 1796
MflI RGATCY 3 cut(s) 859, 1130, 1737
MhlI GDGCHC 4 cut(s) 23, 107, 414, 917
Mly113I GGCGCC 1 cut(s) 2154
MlyI GAGTC 2 cut(s) 614, 1907
MmeI TCCRAC 4 cut(s) 1047, 1328, 2153, 2257
MroXI GAANNNNTTC 1 cut(s) 1234
MseI TTAA 7 cut(s) 488, 516, 587, 1427, 1853, 2028, 2294
MslI CAYNNNNRTG 1 cut(s) 516
MspA1I CMGCKG 1 cut(s) 556
MspI CCGG 3 cut(s) 447, 977, 2151
MspR9I CCNGG 4 cut(s) 991, 1053, 1742, 1877
Mva1269I GAATGC 1 cut(s) 1293
MvaI CCWGG 4 cut(s) 991, 1053, 1742, 1877
MvnI CGCG 1 cut(s) 1954
MwoI GCNNNNNNNGC 1 cut(s) 1288
NarI GGCGCC 1 cut(s) 2154
NcoI CCATGG 2 cut(s) 292, 1459
NdeI CATATG 1 cut(s) 2050
NlaIV GGNNCC 7 cut(s) 290, 509, 1196, 1496, 1517, 1811, 2155
NsbI TGCGCA 1 cut(s) 1445
NspI RCATGY 3 cut(s) 685, 1030, 1266
NspV TTCGAA 2 cut(s) 1228, 1841
PaeR7I CTCGAG 1 cut(s) 1895
PagI TCATGA 1 cut(s) 933
PasI CCCWGGG 2 cut(s) 990, 1876
PciI ACATGT 1 cut(s) 681
PciSI GCTCTTC 2 cut(s) 326, 442
PcsI WCGNNNNNNNCGW 1 cut(s) 1958
PctI GAATGC 1 cut(s) 1293
PdmI GAANNNNTTC 1 cut(s) 1234
PfeI GAWTC 8 cut(s) 305, 349, 625, 1455, 1474, 1792, 1936, 2102
PflMI CCANNNNNTGG 1 cut(s) 530
PfoI TCCNGGA 2 cut(s) 1051, 1740
PkrI GCNGC 7 cut(s) 81, 218, 281, 314, 1956, 1972, 2110
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 2 cut(s) 613, 1906
PluTI GGCGCC 1 cut(s) 2157
PpsI GAGTC 2 cut(s) 613, 1906
Ppu21I YACGTR 1 cut(s) 417
PscI ACATGT 1 cut(s) 681
PshBI ATTAAT 1 cut(s) 2294
Psp124BI GAGCTC 1 cut(s) 414
Psp6I CCWGG 4 cut(s) 989, 1051, 1740, 1875
PspFI CCCAGC 2 cut(s) 552, 1867
PspGI CCWGG 4 cut(s) 989, 1051, 1740, 1875
PspN4I GGNNCC 7 cut(s) 290, 509, 1196, 1496, 1517, 1811, 2155
PspPI GGNCC 4 cut(s) 521, 593, 1055, 1906
PspXI VCTCGAGB 1 cut(s) 1895
PsuI RGATCY 3 cut(s) 859, 1130, 1737
PvuI CGATCG 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 556
RsaI GTAC 5 cut(s) 854, 891, 1142, 1502, 1580
RsaNI GTAC 5 cut(s) 853, 890, 1141, 1501, 1579
RseI CAYNNNNRTG 1 cut(s) 516
SacI GAGCTC 1 cut(s) 414
SapI GCTCTTC 2 cut(s) 326, 442
SaqAI TTAA 7 cut(s) 488, 516, 587, 1427, 1853, 2028, 2294
SatI GCNGC 7 cut(s) 80, 217, 280, 313, 1955, 1971, 2109
Sau96I GGNCC 4 cut(s) 521, 593, 1055, 1906
SchI GAGTC 2 cut(s) 614, 1907
ScrFI CCNGG 4 cut(s) 991, 1053, 1742, 1877
SduI GDGCHC 4 cut(s) 23, 107, 414, 917
SfaNI GCATC 1 cut(s) 1872
SfcI CTRYAG 1 cut(s) 2268
SfoI GGCGCC 1 cut(s) 2155
Sfr274I CTCGAG 1 cut(s) 1895
SfuI TTCGAA 2 cut(s) 1228, 1841
SinI GGWCC 4 cut(s) 521, 593, 1055, 1906
SlaI CTCGAG 1 cut(s) 1895
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 2 cut(s) 1355, 1895
SmoI CTYRAG 2 cut(s) 1355, 1895
SsiI CCGC 4 cut(s) 1181, 1954, 2012, 2114
SspDI GGCGCC 1 cut(s) 2153
SspI AATATT 4 cut(s) 184, 1651, 1664, 2283
SspMI CTAG 3 cut(s) 432, 494, 1010
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 989, 1051, 1740, 1875
StyI CCWWGG 2 cut(s) 292, 1459
TaaI ACNGT 5 cut(s) 18, 650, 849, 2025, 2272
TaiI ACGT 5 cut(s) 419, 1334, 1964, 1983, 2238
TaqI TCGA 9 cut(s) 7, 201, 299, 303, 714, 1228, 1373, 1841, 1896
TatI WGTACW 2 cut(s) 852, 1578
TauI GCSGC 1 cut(s) 1957
TfiI GAWTC 8 cut(s) 305, 349, 625, 1455, 1474, 1792, 1936, 2102
Tru1I TTAA 7 cut(s) 488, 516, 587, 1427, 1853, 2028, 2294
Tru9I TTAA 7 cut(s) 488, 516, 587, 1427, 1853, 2028, 2294
TscAI CASTG 6 cut(s) 21, 112, 667, 852, 1119, 1190
TseI GCWGC 6 cut(s) 79, 216, 279, 312, 1970, 2108
TspRI CASTG 6 cut(s) 21, 112, 667, 852, 1119, 1190
Van91I CCANNNNNTGG 1 cut(s) 530
VneI GTGCAC 1 cut(s) 103
VpaK11BI GGWCC 4 cut(s) 521, 593, 1055, 1906
VspI ATTAAT 1 cut(s) 2294
XapI RAATTY 7 cut(s) 381, 400, 464, 760, 1594, 2168, 2180
XceI RCATGY 3 cut(s) 685, 1030, 1266
XcmI CCANNNNNNNNNTGG 4 cut(s) 465, 730, 900, 1748
XhoI CTCGAG 1 cut(s) 1895
XmiI GTMKAC 1 cut(s) 1625
XmnI GAANNNNTTC 1 cut(s) 1234
XspI CTAG 3 cut(s) 432, 494, 1010
ZraI GACGTC 2 cut(s) 1332, 2236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.