Rh1AG117600

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004794
Physical Location & Seq
Reverse (-)
20160448 .. 20164462
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG117600.1

Sequence Viewer

Length: 2250 bp
ATGATGCAGGAATTGTCAACCATAGACGACCTACCTGCGACTAATGTGGAACTGGAACCGGAAAAGATAGAAGATGGGAAAGATGGAGGTCCTTCATTCCACTGTAAACTTTACAGCACGGAATTAGTTCATAAGATAGCTCAGGTTTTCATTCCTGGATTAGCTACTGCATGTGTTGATAACACATCTGGTGATATCTTCAAGACCCCTGCTTCTGTGGCTGCCGATGTGAGAAAGGAAATGGTGGAGTATATCACTCAAAGAAGTGAGAATTTTGTTGCAGAATCTGTTATCCTAGAAGGGGGCCAAGATGGACAAGTATCTGATCATCCCTATGACATAATTTCTGATTTTGTTGATGACTTTGCAAGTTCCAAAAGAAATTTGTTTAGTCGGGTTTCGGGATGGCTGCTCAGTGAAAAGAGAGAAGATAAAATAGATGATTTTGTTCAAGAGATGGAAATAAATGGCTTTTGGCTGGTTGATAAAAGAGAAACAATAGCACAGAATTTGCTAAAGAATGTCGATCTTAAGAATGAGCATCACTGCAATATGAAATTTCACACCCCAGAGGAGCTTGAAGCGCATGTTCTAAAGTGTAGCTATAGGTCTTTGAGTTGCATACATGAAGGATGTAATGTCATATTTTGTGCAAGTCAGGTGGATAAACATGATGCAGTTTGCCCCTTCAAGATAATTCCATGCGAACAAAACTGCTCCGACATGATCATGAGACGTGAAATGGACAGACATTGTATTACCATCTGTCCAATGAAGCTTGTTAGTTGTCCGTTCTATGCAGTGGGTTGTCAATCCCCGGTACCACATTGTAAGCTTGAGCAGCATCGTTCAGATGATCTCCATTCTCACATGCTATTTGTTCTACAGAGTATTCATAAGGAAGCATCTATGGAAGATCTGAAAAGAAGGCTGGAGCAACTAAAAGATGCATCTTCTTCCAATAACTTAGCACAAGCTCGAGATGTGAGATCACTAACCTCTGCAGTCAAGGATCTTGAAGCAAAACTAGGGCCGATGGAAATTAGCAGGAAACGCCATGAGGATCATGAAGCAGAACATGGGCCAGGGGAAGTAGGCAGCAAAAGCAAAACTCCAGAGGATGTGGAATCAGGGCCAAAAGAAGTGAGTAATAAACCTGAGGAGGACTTTGAAGTAAAACCAGCACCAAAGGAAGTTAGCCAACAATCGGAGTATCTTGAAGCAAAATCAGAGTCAAGGGAAGTTAGTACTAAATCTGTGGAGGATCTTGAAGGTAAACCAGCACCAAAGGATCTGAGCAGCAAACCTGCAGAAGATCTTGAACCAAAACCAGCTCCAAAGGAAGTCAGTAGTTCAAAAACTCTCAAAGATGTTGAAGCAAGACCAGTGGGAGTGAGCAGTAATGCACCAACAGGACATGAAGCTAAACCAGCACCAAAGGATTTGAGCACTAAACCTGCAGAAGATTGTGAAGCAAGACCATCTCCGAAAGAAGTCAGTAGTTCAAAACCCCCTGAAGATGTTGTAGCAAGGCCAGTGGGAGTGAGCAGTAAGGCCCCAACAGGACATGAAGCTAAACCAGCACCAATGGAACTGAGCACCAAACCTTCAGAAGATCTTGAAGCAAAACCAGCTCTGAAGGAAGTCAGTAGTTCAAAACCCCCCATAGATGTTGAAGCAAAAACAGTGGGAGTGAGCGGTAAGGCCCCAACAGGACATGAAGAAAAATTAGGGGCAAAAGAACTGAGCACCGAACCTATAGAAGATCGTGAAGCAAAAGTAGCTCTGGAGGAAGTTAGTAGTTCAAAAACCCCCAAAGATGTTGAAGCAAAGCCAGTGGGAGTGAGCAGTAAGGCCCCAATCGGACATGAAGCTAAACCAGCAACAAAGGAACTGAGCACCAAACCTGCGGAAGATCTTGAAGCAAAACCAGCTCTGAAGGAAGTCAGTAGTTCAAAACCCGATGTTGAATCAAGGCCAGTGGGAGTGAGCGGTAAGGCCCTAACAGGACATGAAGAAAAATTAGCGACAAAGGAAGTGAGAAGCGAATCACTAGAGGAGATCGAAACAAAACTAAGAGCAAAGGAAGTGGGAAGCAAACCACCAGAGGAACTTGAAACAAATCTAGGAAAAAAAGGAGTGGGCAGCAAAACCCCAGAAAGATATGAAACACAACTAGAAACAAAGGAAGTGAGCTGCAAACCCCTTGAGGAACTCGAAAAATTAAGTGACAAAGGAAGTGAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

749

Amino Acids

82.12

Weight (kDa)

5.23

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 224 - 282 9.5e-11 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 43, 1315, 1465, 1915
Acc65I GGTACC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 820
AccBSI CCGCTC 2 cut(s) 1698, 1992
AciI CCGC 3 cut(s) 1698, 1910, 1992
AclWI GGATC 4 cut(s) 1020, 1071, 1272, 1299
AcsI RAATTY 4 cut(s) 271, 382, 508, 557
AcuI CTGAAG 4 cut(s) 1536, 1593, 1658, 1958
AfaI GTAC 2 cut(s) 822, 1249
AfiI CCNNNNNNNGG 2 cut(s) 301, 1207
AflII CTTAAG 1 cut(s) 530
AjiI CACGTC 1 cut(s) 737
AjnI CCWGG 2 cut(s) 154, 1084
Alw21I GWGCWC 4 cut(s) 1451, 1601, 1751, 1901
Alw26I GTCTC 1 cut(s) 727
AlwI GGATC 4 cut(s) 1020, 1071, 1272, 1299
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 978
ApeKI GCWGC 7 cut(s) 221, 409, 841, 1098, 1299, 2145, 2196
ApoI RAATTY 4 cut(s) 271, 382, 508, 557
ArsI GACNNNNNNTTYG 2 cut(s) 1217, 1249
Asp700I GAANNNNTTC 1 cut(s) 126
Asp718I GGTACC 1 cut(s) 820
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 9 cut(s) 89, 304, 1031, 1082, 1133, 1555, 1705, 1855, 1999
AsuC2I CCSGG 1 cut(s) 818
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 978
AvaII GGWCC 1 cut(s) 89
AxyI CCTNAGG 1 cut(s) 1158
BanI GGYRCC 1 cut(s) 820
Bbv12I GWGCWC 4 cut(s) 1451, 1601, 1751, 1901
BbvI GCAGC 7 cut(s) 208, 396, 853, 1110, 1311, 2157, 2183
BccI CCATC 8 cut(s) 68, 77, 305, 399, 451, 770, 1030, 1489
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BciT130I CCWGG 2 cut(s) 156, 1086
BclI TGATCA 2 cut(s) 325, 726
BcnI CCSGG 1 cut(s) 818
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 5 cut(s) 296, 1028, 2054, 2126, 2177
BfmI CTRYAG 6 cut(s) 604, 884, 1002, 1308, 1458, 1758
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 4 cut(s) 43, 1315, 1465, 1915
BglII AGATCT 4 cut(s) 916, 1315, 1615, 1915
BisI GCNGC 7 cut(s) 222, 410, 842, 1099, 1300, 2146, 2197
BlsI GCNGC 7 cut(s) 223, 411, 843, 1100, 1301, 2147, 2198
BmcAI AGTACT 1 cut(s) 1249
Bme1390I CCNGG 3 cut(s) 156, 818, 1086
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 978
BmgBI CACGTC 1 cut(s) 737
BmgT120I GGNCC 9 cut(s) 89, 304, 1031, 1082, 1133, 1555, 1705, 1855, 1999
BmiI GGNNCC 6 cut(s) 57, 305, 822, 1557, 1707, 1857
BmrFI CCNGG 3 cut(s) 156, 818, 1086
BmsI GCATC 6 cut(s) 550, 664, 853, 914, 937, 959
BpmI CTGGAG 3 cut(s) 953, 1098, 1808
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 857, 2228
BpuMI CCSGG 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 816, 1085
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 1207
Bse1I ACTGG 5 cut(s) 57, 1385, 1535, 1835, 1979
Bse21I CCTNAGG 1 cut(s) 1158
BseBI CCWGG 2 cut(s) 156, 1086
BseDI CCNNGG 2 cut(s) 816, 1085
BseGI GGATG 4 cut(s) 328, 410, 638, 1126
BseLI CCNNNNNNNGG 2 cut(s) 301, 1207
BseMII CTCAG 7 cut(s) 155, 427, 1149, 1286, 1586, 1736, 1886
BseNI ACTGG 5 cut(s) 57, 1385, 1535, 1835, 1979
BseRI GAGGAG 3 cut(s) 587, 1175, 2072
BseXI GCAGC 7 cut(s) 208, 396, 853, 1110, 1311, 2157, 2183
BshNI GGYRCC 1 cut(s) 820
BsiHKAI GWGCWC 4 cut(s) 1451, 1601, 1751, 1901
BsiHKCI CYCGRG 1 cut(s) 978
BsiSI CCGG 2 cut(s) 59, 818
BslI CCNNNNNNNGG 2 cut(s) 301, 1207
BsmAI GTCTC 1 cut(s) 727
BsmBI CGTCTC 1 cut(s) 727
BsoBI CYCGRG 1 cut(s) 978
Bsp1286I GDGCHC 4 cut(s) 1451, 1601, 1751, 1901
BspACI CCGC 3 cut(s) 1698, 1910, 1992
BspCNI CTCAG 7 cut(s) 154, 426, 1150, 1287, 1587, 1737, 1887
BspHI TCATGA 2 cut(s) 729, 1066
BspLI GGNNCC 6 cut(s) 57, 305, 822, 1557, 1707, 1857
BspMAI CTGCAG 3 cut(s) 1006, 1312, 1462
BspMI ACCTGC 4 cut(s) 43, 1315, 1465, 1915
BspPI GGATC 4 cut(s) 1020, 1071, 1272, 1299
BspT107I GGYRCC 1 cut(s) 820
BspTI CTTAAG 1 cut(s) 530
BsrBI CCGCTC 2 cut(s) 1698, 1992
BsrI ACTGG 5 cut(s) 57, 1385, 1535, 1835, 1979
BssECI CCNNGG 2 cut(s) 816, 1085
Bst2UI CCWGG 2 cut(s) 156, 1086
Bst4CI ACNGT 2 cut(s) 104, 1687
BstAFI CTTAAG 1 cut(s) 530
BstDEI CTNAG 9 cut(s) 141, 413, 967, 1158, 1295, 1595, 1745, 1895, 2075
BstF5I GGATG 4 cut(s) 328, 410, 638, 1126
BstHHI GCGC 1 cut(s) 586
BstMAI GTCTC 1 cut(s) 727
BstNI CCWGG 2 cut(s) 156, 1086
BstNSI RCATGY 3 cut(s) 174, 590, 874
BstSCI CCNGG 3 cut(s) 154, 816, 1084
BstSFI CTRYAG 6 cut(s) 604, 884, 1002, 1308, 1458, 1758
BstV1I GCAGC 7 cut(s) 208, 396, 853, 1110, 1311, 2157, 2183
BstX2I RGATCY 7 cut(s) 916, 1012, 1264, 1291, 1315, 1615, 1915
BstYI RGATCY 7 cut(s) 916, 1012, 1264, 1291, 1315, 1615, 1915
Bsu36I CCTNAGG 1 cut(s) 1158
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 4 cut(s) 328, 410, 638, 1126
BtsI GCAGTG 2 cut(s) 544, 807
BtsIMutI CAGTG 9 cut(s) 100, 421, 544, 807, 1392, 1542, 1692, 1842, 1986
BveI ACCTGC 4 cut(s) 43, 1315, 1465, 1915
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 2 cut(s) 729, 1066
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 9 cut(s) 89, 304, 1031, 1082, 1133, 1555, 1705, 1855, 1999
Csp6I GTAC 2 cut(s) 821, 1248
CviQI GTAC 2 cut(s) 821, 1248
DdeI CTNAG 9 cut(s) 141, 413, 967, 1158, 1295, 1595, 1745, 1895, 2075
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 4 cut(s) 1536, 1593, 1658, 1958
Eco81I CCTNAGG 1 cut(s) 1158
Eco88I CYCGRG 1 cut(s) 978
EcoO109I RGGNCCY 5 cut(s) 89, 1555, 1705, 1855, 1999
EcoRII CCWGG 2 cut(s) 154, 1084
EcoRV GATATC 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 952
Esp3I CGTCTC 1 cut(s) 727
FbaI TGATCA 2 cut(s) 325, 726
Fnu4HI GCNGC 7 cut(s) 222, 410, 842, 1099, 1300, 2146, 2197
FokI GGATG 4 cut(s) 315, 417, 645, 1133
Fsp4HI GCNGC 7 cut(s) 222, 410, 842, 1099, 1300, 2146, 2197
FspBI CTAG 5 cut(s) 296, 1028, 2054, 2126, 2177
GlaI GCGC 1 cut(s) 585
GluI GCNGC 7 cut(s) 222, 410, 842, 1099, 1300, 2146, 2197
GsuI CTGGAG 3 cut(s) 953, 1098, 1808
HapII CCGG 2 cut(s) 59, 818
HhaI GCGC 1 cut(s) 586
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 2 cut(s) 776, 833
HinfI GANTC 5 cut(s) 284, 1127, 1232, 1970, 2048
HpaII CCGG 2 cut(s) 59, 818
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 3 cut(s) 18, 107, 1277
Hpy8I GTNNAC 3 cut(s) 18, 107, 1277
HpyAV CCTTC 9 cut(s) 102, 293, 623, 697, 921, 1265, 1617, 1633, 1933
HpyCH4III ACNGT 2 cut(s) 104, 1687
HpyCH4IV ACGT 1 cut(s) 736
HpyF3I CTNAG 9 cut(s) 141, 413, 967, 1158, 1295, 1595, 1745, 1895, 2075
HpySE526I ACGT 1 cut(s) 736
HspAI GCGC 1 cut(s) 584
KpnI GGTACC 1 cut(s) 824
Ksp22I TGATCA 2 cut(s) 325, 726
LmnI GCTCC 4 cut(s) 574, 722, 934, 1339
Lsp1109I GCAGC 7 cut(s) 208, 396, 853, 1110, 1311, 2157, 2183
LweI GCATC 6 cut(s) 550, 664, 853, 914, 937, 959
MaeI CTAG 5 cut(s) 296, 1028, 2054, 2126, 2177
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 1 cut(s) 2228
MbiI CCGCTC 2 cut(s) 1698, 1992
MflI RGATCY 7 cut(s) 916, 1012, 1264, 1291, 1315, 1615, 1915
MhlI GDGCHC 4 cut(s) 1451, 1601, 1751, 1901
MlyI GAGTC 1 cut(s) 1241
MmeI TCCRAC 1 cut(s) 744
Mph1103I ATGCAT 1 cut(s) 952
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 2 cut(s) 531, 2225
MslI CAYNNNNRTG 2 cut(s) 333, 728
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 2 cut(s) 59, 818
MspR9I CCNGG 3 cut(s) 156, 818, 1086
MvaI CCWGG 2 cut(s) 156, 1086
NciI CCSGG 1 cut(s) 818
NlaIV GGNNCC 6 cut(s) 57, 305, 822, 1557, 1707, 1857
NmuCI GTSAC 1 cut(s) 2228
NsiI ATGCAT 1 cut(s) 952
NspI RCATGY 3 cut(s) 174, 590, 874
PaeR7I CTCGAG 1 cut(s) 978
PagI TCATGA 2 cut(s) 729, 1066
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 4 cut(s) 284, 1127, 1970, 2048
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 7 cut(s) 223, 411, 843, 1100, 1301, 2147, 2198
PleI GAGTC 1 cut(s) 1240
PpsI GAGTC 1 cut(s) 1240
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 154, 1084
PspGI CCWGG 2 cut(s) 154, 1084
PspN4I GGNNCC 6 cut(s) 57, 305, 822, 1557, 1707, 1857
PspPI GGNCC 9 cut(s) 89, 304, 1031, 1082, 1133, 1555, 1705, 1855, 1999
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 3 cut(s) 1006, 1312, 1462
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 7 cut(s) 916, 1012, 1264, 1291, 1315, 1615, 1915
RsaI GTAC 2 cut(s) 822, 1249
RsaNI GTAC 2 cut(s) 821, 1248
RseI CAYNNNNRTG 2 cut(s) 333, 728
SaqAI TTAA 2 cut(s) 531, 2225
SatI GCNGC 7 cut(s) 222, 410, 842, 1099, 1300, 2146, 2197
Sau96I GGNCC 9 cut(s) 89, 304, 1031, 1082, 1133, 1555, 1705, 1855, 1999
ScaI AGTACT 1 cut(s) 1249
SchI GAGTC 1 cut(s) 1241
ScrFI CCNGG 3 cut(s) 156, 818, 1086
SduI GDGCHC 4 cut(s) 1451, 1601, 1751, 1901
SfaNI GCATC 6 cut(s) 550, 664, 853, 914, 937, 959
SfcI CTRYAG 6 cut(s) 604, 884, 1002, 1308, 1458, 1758
Sfr274I CTCGAG 1 cut(s) 978
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 978
SmiMI CAYNNNNRTG 2 cut(s) 333, 728
SmlI CTYRAG 4 cut(s) 530, 836, 978, 2207
SmoI CTYRAG 4 cut(s) 530, 836, 978, 2207
SsiI CCGC 3 cut(s) 1698, 1910, 1992
SspMI CTAG 5 cut(s) 296, 1028, 2054, 2126, 2177
StyD4I CCNGG 3 cut(s) 154, 816, 1084
TaaI ACNGT 2 cut(s) 104, 1687
TaiI ACGT 1 cut(s) 739
TaqI TCGA 4 cut(s) 525, 979, 2064, 2217
TatI WGTACW 1 cut(s) 1247
TfiI GAWTC 4 cut(s) 284, 1127, 1970, 2048
Tru1I TTAA 2 cut(s) 531, 2225
Tru9I TTAA 2 cut(s) 531, 2225
TscAI CASTG 9 cut(s) 107, 421, 551, 807, 1392, 1542, 1692, 1842, 1986
TseFI GTSAC 1 cut(s) 2228
TseI GCWGC 7 cut(s) 221, 409, 841, 1098, 1299, 2145, 2196
Tsp45I GTSAC 1 cut(s) 2228
TspGWI ACGGA 2 cut(s) 134, 780
TspRI CASTG 9 cut(s) 107, 421, 551, 807, 1392, 1542, 1692, 1842, 1986
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 4 cut(s) 271, 382, 508, 557
XceI RCATGY 3 cut(s) 174, 590, 874
XhoI CTCGAG 1 cut(s) 978
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 5 cut(s) 296, 1028, 2054, 2126, 2177
ZrmI AGTACT 1 cut(s) 1249
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.