FvH4_7g09110

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005196
Physical Location & Seq
Forward (+)
8845212 .. 8845547
336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09110.t1

Sequence Viewer

Length: 336 bp
ATGATTATGGAGGTTGCAAAAGAACGCAATGAAGCCACTTATGAGAAGGATCTTCTTCAAATGGTACTGGAGGGAGCTAAAACTTACTCTGATGCTAATAGCTTTTTTTCATCTGGTATGTCCAAGGACCAGTTTATAGTGGATAATTGCAAGAATATATACCTTGCTGGCCAAGACACCACTGCTGTCATAGCAACATGGTGCTTCTTGTTGTTGGCTGCATATCCTGAGTGGCAAGCTCGTGTTCATGCTGAGGTTCTTGAACTTTGCAAGGACGGAATTCCAAATGCTGATGTGCTTCCAGCCATGAAAACAGTACGTTGGTTTACTACATAA

Protein Analysis

112

Amino Acids

12.53

Weight (kDa)

4.72

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 105 3.6e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 2 cut(s) 66, 318
AgsI TTSAA 2 cut(s) 59, 263
AluBI AGCT 3 cut(s) 77, 102, 239
AluI AGCT 3 cut(s) 77, 102, 239
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 127
AvaII GGWCC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 171
BauI CACGAG 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 205
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmsI GCATC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 123
Bse1I ACTGG 2 cut(s) 72, 130
Bse3DI GCAATG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 219, 243
BseNI ACTGG 2 cut(s) 72, 130
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 1 cut(s) 171
BsnI GGCC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 49
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 220, 244
BspPI GGATC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 2 cut(s) 72, 130
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 49
BssSI CACGAG 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 169, 237
BstDEI CTNAG 2 cut(s) 228, 252
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 171
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 169, 237
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 65, 317
CviAII CATG 3 cut(s) 198, 248, 307
CviJI RGCY 7 cut(s) 35, 77, 102, 171, 218, 239, 305
CviKI_1 RGCY 7 cut(s) 35, 77, 102, 171, 218, 239, 305
CviQI GTAC 2 cut(s) 65, 317
DdeI CTNAG 2 cut(s) 228, 252
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 3 cut(s) 201, 251, 310
FatI CATG 3 cut(s) 197, 247, 306
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 171
Hin1II CATG 3 cut(s) 201, 251, 310
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 227, 260
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 4 cut(s) 17, 150, 221, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 228, 252
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 3 cut(s) 201, 251, 310
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 53, 99, 143, 153, 240, 315
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 82
MaeII ACGT 1 cut(s) 319
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 2 cut(s) 44, 47
MflI RGATCY 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 2 cut(s) 145, 279
MluNI TGGCCA 1 cut(s) 171
MnlI CCTC 3 cut(s) 4, 64, 247
Mox20I TGGCCA 1 cut(s) 171
MscI TGGCCA 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 49
NlaIII CATG 3 cut(s) 201, 251, 310
PkrI GCNGC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 2 cut(s) 66, 318
RsaNI GTAC 2 cut(s) 65, 317
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 127
SetI ASST 7 cut(s) 15, 79, 104, 165, 241, 258, 322
SfaNI GCATC 1 cut(s) 82
SinI GGWCC 1 cut(s) 127
Sse9I AATT 2 cut(s) 145, 279
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 1 cut(s) 322
TasI AATT 2 cut(s) 145, 279
TscAI CASTG 1 cut(s) 187
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 4 cut(s) 45, 99, 236, 323
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.