Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001143.1

Orthogroup ID

OG0005196

Physical Location & Seq

Genomic Coordinates Reverse (-)

120034 .. 121112

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001143.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgttggaaaaggaaactcaatcactgatattgaaggtggtaaaacaacgtaatgaaggttcatatgagaaagatttgctgcaaatgtttcttgaaggtgccaaaagttctggtgacttaaatggcctatcacacaataagtttattgttgataactgcaagactatattctttgctggccatgagaccactgcccttgtaacatcatggagcttgctgttactagctctccatccagattggcaagctcgtgctcgagctgaggtacttgaaatctgtggtgataagcctctagatgcagatatgcttcgacaaatgaaagtgctcacaatggtgattcaggaggtattgcgtctttacccgcctgcactctttctatcaagagaggtatttgaaactatcaaatttaaaaacattacatttccaaaggggacgctacttcaaataccaatccccttcttacaccagaaccctgatctgtggggatctgatgctcataagttcaacccagaaagatttgccaatggaattgtcaaggcttgcaagtctccacaggcctacatgccattcggagcaggttctcgtatatgttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

198

Amino Acids

22.38

Weight (kDa)

8.25

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005196)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09110 FvH4_7g09111 FvH4_7g09111
malus_domestica	MD02G1221300.v1.1 MD07G1095000.v1.1 MD07G1095100.v1.1
prunus_persica	Prupe.2G119500_v2.0.a1 Prupe.2G119600_v2.0.a1 Prupe.2G119700_v2.0.a1 Prupe.6G038000_v2.0.a1
pyrus_communis	pycom02g18640 pycom07g07830 pycom07g07850
rosa_chinensis	RchiOBHm_Chr1g0344981
rosa_laevigata	RLG00000028863 RLG00000028864
rosa_multiflora	Rmu_co8441511.1_g000001 Rmu_sc0001143.1_g000030 Rmu_sc0008167.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309450 Rroxscaffold_4G00309480
rosa_rugosa	Rorug01G0175400 Rorug01G0175500
rosa_samantha	Rh1AG193300 Rh1BG159700 Rh1BG159900 Rh1CG178400 Rh1DG190500 Rh1DG190600
rosa_wichuraiana	Rw1G015920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	98
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	493
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	404
AfaI	GTAC	1 cut(s)	267
AgsI	TTSAA	6 cut(s)	34, 95, 272, 395, 443, 505
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	4 cut(s)	213, 227, 248, 260
AluI	AGCT	4 cut(s)	213, 227, 248, 260
Alw21I	GWGCWC	2 cut(s)	256, 327
Alw26I	GTCTC	2 cut(s)	179, 552
AlwI	GGATC	1 cut(s)	493
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	3 cut(s)	124, 178, 555
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	404
AsuHPI	GGTGA	3 cut(s)	125, 293, 346
AvaI	CYCGRG	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	98
BauI	CACGAG	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	256, 327
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	179, 552
BfaI	CTAG	2 cut(s)	224, 293
BfuAI	ACCTGC	1 cut(s)	566
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	100
BmsI	GCATC	2 cut(s)	286, 481
Bpu10I	CCTNAGC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
BseGI	GGATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	126, 180, 557
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	2 cut(s)	256, 327
BsiHKCI	CYCGRG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	445
BsmAI	GTCTC	2 cut(s)	179, 552
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	126, 180, 557
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	256, 327
Bsp143I	GATC	2 cut(s)	475, 485
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	3 cut(s)	126, 180, 557
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	566
BspPI	GGATC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	179
BssMI	GATC	2 cut(s)	475, 485
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
BstC8I	GCNNGC	5 cut(s)	178, 215, 246, 366, 541
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	2 cut(s)	478, 488
BstMAI	GTCTC	2 cut(s)	179, 552
BstMBI	GATC	2 cut(s)	475, 485
BstNSI	RCATGY	1 cut(s)	565
BstV1I	GCAGC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuRI	GGCC	3 cut(s)	126, 180, 557
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	23, 189
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	5 cut(s)	178, 215, 246, 366, 541
CseI	GACGC	2 cut(s)	341, 442
Csp6I	GTAC	1 cut(s)	266
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	3 cut(s)	182, 207, 562
CviJI	RGCY	9 cut(s)	126, 180, 213, 227, 248, 260, 289, 539, 557
CviKI_1	RGCY	9 cut(s)	126, 180, 213, 227, 248, 260, 289, 539, 557
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	477, 487
DpnII	GATC	2 cut(s)	475, 485
DraI	TTTAAA	1 cut(s)	409
EaeI	YGGCCR	1 cut(s)	178
Eco147I	AGGCCT	1 cut(s)	557
Eco31I	GGTCTC	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	255
FaeI	CATG	3 cut(s)	185, 210, 565
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	181, 206, 561
FauI	CCCGC	1 cut(s)	369
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	80
FspBI	CTAG	2 cut(s)	224, 293
GluI	GCNGC	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	126, 180, 557
HgaI	GACGC	2 cut(s)	341, 442
Hin1II	CATG	3 cut(s)	185, 210, 565
HinfI	GANTC	1 cut(s)	337
HphI	GGTGA	3 cut(s)	125, 293, 346
Hpy188I	TCNGA	2 cut(s)	490, 572
Hpy188III	TCNNGA	5 cut(s)	92, 236, 293, 341, 381
HpyAV	CCTTC	4 cut(s)	28, 50, 89, 466
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	5 cut(s)	82, 159, 299, 368, 543
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	3 cut(s)	185, 210, 565
Kzo9I	GATC	2 cut(s)	475, 485
LmnI	GCTCC	2 cut(s)	210, 572
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	2 cut(s)	286, 481
MaeI	CTAG	2 cut(s)	224, 293
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	3 cut(s)	113, 199, 219
MalI	GATC	2 cut(s)	477, 487
MboI	GATC	2 cut(s)	475, 485
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	2 cut(s)	256, 327
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	2 cut(s)	404, 528
MluNI	TGGCCA	1 cut(s)	180
MnlI	CCTC	4 cut(s)	256, 300, 337, 379
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	2 cut(s)	119, 408
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	180
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	2 cut(s)	475, 485
NlaIII	CATG	3 cut(s)	185, 210, 565
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	565
OliI	CACNNNNGTG	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	557
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	255
PsrI	GAACNNNNNNTAC	2 cut(s)	43, 75
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	119, 408
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	2 cut(s)	475, 485
SduI	GDGCHC	2 cut(s)	256, 327
SfaNI	GCATC	2 cut(s)	286, 481
Sfr274I	CTCGAG	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	2 cut(s)	404, 528
SseBI	AGGCCT	1 cut(s)	557
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	2 cut(s)	224, 293
StuI	AGGCCT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	256, 310
TasI	AATT	2 cut(s)	404, 528
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	2 cut(s)	119, 408
Tru9I	TTAA	2 cut(s)	119, 408
TscAI	CASTG	2 cut(s)	30, 196
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	51, 69, 332
TspRI	CASTG	2 cut(s)	30, 196
XapI	RAATTY	1 cut(s)	404
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	1 cut(s)	565
XhoI	CTCGAG	1 cut(s)	255
XspI	CTAG	2 cut(s)	224, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.