Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8441511.1

Orthogroup ID

OG0005196

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1343

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8441511.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgatactggaggttgcaaaaaagcgcaatgaggctacttatgagaaggatcttcttcaaatgatactcgagggagcaaaaaattactctgatgctgatagctttttttcatctggtatgtctgaggaccagttcatagtggataattgcaagaatatatattttgctggccatgagaccaccgccatcacagcatcatggtgcttgctgttgttggctgcatatccagagtggcaagctcgtgttcgtgctgaggtgcttgaaatttgcaaggatggcattccaaatgctgatgtgcttcgaggcatgaaaacattgactatggtgattcaagaaacactgcgcttgtactcaccagcaactttcatcgtaagacatgcattggaagatattaaactcaaagatattctaattcccaaaggaaccaccattcagatcccaatctcaatggtgcagcaattgccggaattatggggacctgatgctgctgactttaatcccaatagattcgaggatggaattcgtggggcttgcaagtttcctcaggcctatttcccatttggatttggcgctcgcatttgtgttggccaaaacttggccatgacagaattgaaggtgattctgtctctcatgttatccaagttatcattctcgctcgaccctgcataccaacacagcccggtttttaggttggttattgaacctgaacatgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

238

Amino Acids

26.75

Weight (kDa)

5.3

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005196)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09110 FvH4_7g09111 FvH4_7g09111
malus_domestica	MD02G1221300.v1.1 MD07G1095000.v1.1 MD07G1095100.v1.1
prunus_persica	Prupe.2G119500_v2.0.a1 Prupe.2G119600_v2.0.a1 Prupe.2G119700_v2.0.a1 Prupe.6G038000_v2.0.a1
pyrus_communis	pycom02g18640 pycom07g07830 pycom07g07850
rosa_chinensis	RchiOBHm_Chr1g0344981
rosa_laevigata	RLG00000028863 RLG00000028864
rosa_multiflora	Rmu_co8441511.1_g000001 Rmu_sc0001143.1_g000030 Rmu_sc0008167.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309450 Rroxscaffold_4G00309480
rosa_rugosa	Rorug01G0175400 Rorug01G0175500
rosa_samantha	Rh1AG193300 Rh1BG159700 Rh1BG159900 Rh1CG178400 Rh1DG190500 Rh1DG190600
rosa_wichuraiana	Rw1G015920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	595
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	2 cut(s)	57, 430
AcoI	YGGCCR	3 cut(s)	169, 586, 597
AcsI	RAATTY	2 cut(s)	264, 519
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	595, 710
AgsI	TTSAA	5 cut(s)	59, 263, 332, 613, 701
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	2 cut(s)	102, 239
AluI	AGCT	2 cut(s)	102, 239
Alw26I	GTCTC	2 cut(s)	170, 630
AlwI	GGATC	2 cut(s)	57, 430
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	4 cut(s)	169, 546, 586, 597
ApeKI	GCWGC	3 cut(s)	218, 454, 485
ApoI	RAATTY	2 cut(s)	264, 519
AspLEI	GCGC	3 cut(s)	27, 345, 572
AspS9I	GGNCC	2 cut(s)	127, 476
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	337, 345, 628
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	127, 476
AxyI	CCTNAGG	1 cut(s)	543
BalI	TGGCCA	3 cut(s)	171, 588, 599
BauI	CACGAG	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	205, 466, 472
BccI	CCATC	3 cut(s)	194, 269, 509
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	2 cut(s)	170, 630
BfoI	RGCGCY	1 cut(s)	573
BisI	GCNGC	3 cut(s)	219, 455, 486
BlsI	GCNGC	3 cut(s)	220, 456, 487
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	2 cut(s)	127, 476
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	127, 476
BmiI	GGNNCC	2 cut(s)	424, 477
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	3 cut(s)	82, 203, 472
BpmI	CTGGAG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	680
BsaBI	GATNNNNATC	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 710
Bse1I	ACTGG	2 cut(s)	12, 130
Bse21I	CCTNAGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	440
BseGI	GGATG	2 cut(s)	280, 520
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	2 cut(s)	595, 710
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	3 cut(s)	114, 243, 557
BseNI	ACTGG	2 cut(s)	12, 130
BseXI	GCAGC	3 cut(s)	205, 466, 472
BsgI	GTGCAG	1 cut(s)	473
BshFI	GGCC	4 cut(s)	171, 548, 588, 599
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	464, 680
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	2 cut(s)	595, 710
BsmAI	GTCTC	2 cut(s)	170, 630
BsmFI	GGGAC	1 cut(s)	489
BsmI	GAATGC	1 cut(s)	279
BsnI	GGCC	4 cut(s)	171, 548, 588, 599
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	49, 435
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	4 cut(s)	171, 548, 588, 599
BspCNI	CTCAG	3 cut(s)	115, 244, 556
BspLI	GGNNCC	2 cut(s)	424, 477
BspPI	GGATC	2 cut(s)	57, 430
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	12, 130
BssMI	GATC	2 cut(s)	49, 435
BssSI	CACGAG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstC8I	GCNNGC	5 cut(s)	169, 206, 237, 532, 574
BstDEI	CTNAG	3 cut(s)	123, 252, 543
BstF5I	GGATG	2 cut(s)	280, 520
BstH2I	RGCGCY	1 cut(s)	573
BstHHI	GCGC	3 cut(s)	27, 345, 572
BstKTI	GATC	2 cut(s)	52, 438
BstMAI	GTCTC	2 cut(s)	170, 630
BstMBI	GATC	2 cut(s)	49, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 276, 460
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	678
BstV1I	GCAGC	3 cut(s)	205, 466, 472
BstX2I	RGATCY	2 cut(s)	49, 435
BstYI	RGATCY	2 cut(s)	49, 435
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	4 cut(s)	171, 548, 588, 599
BtsCI	GGATG	2 cut(s)	280, 520
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	5 cut(s)	169, 206, 237, 532, 574
CfoI	GCGC	3 cut(s)	27, 345, 572
Cfr13I	GGNCC	2 cut(s)	127, 476
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	7 cut(s)	173, 198, 307, 377, 601, 631, 710
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	3 cut(s)	123, 252, 543
DpnI	GATC	2 cut(s)	51, 437
DpnII	GATC	2 cut(s)	49, 435
EaeI	YGGCCR	3 cut(s)	169, 586, 597
Eco147I	AGGCCT	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	127, 476
Eco81I	CCTNAGG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRI	GAATTC	1 cut(s)	519
EcoT22I	ATGCAT	1 cut(s)	382
FaeI	CATG	7 cut(s)	176, 201, 310, 380, 604, 634, 713
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	7 cut(s)	172, 197, 306, 376, 600, 630, 709
Fnu4HI	GCNGC	3 cut(s)	219, 455, 486
FokI	GGATG	2 cut(s)	287, 527
Fsp4HI	GCNGC	3 cut(s)	219, 455, 486
GlaI	GCGC	3 cut(s)	26, 344, 571
GluI	GCNGC	3 cut(s)	219, 455, 486
GsuI	CTGGAG	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	573
HaeIII	GGCC	4 cut(s)	171, 548, 588, 599
HapII	CCGG	2 cut(s)	464, 680
HhaI	GCGC	3 cut(s)	27, 345, 572
Hin1II	CATG	7 cut(s)	176, 201, 310, 380, 604, 634, 713
Hin6I	GCGC	3 cut(s)	25, 343, 570
HinP1I	GCGC	3 cut(s)	25, 343, 570
HinfI	GANTC	3 cut(s)	328, 507, 619
HpaII	CCGG	2 cut(s)	464, 680
HphI	GGTGA	3 cut(s)	337, 345, 628
Hpy188I	TCNGA	3 cut(s)	91, 124, 435
Hpy188III	TCNNGA	2 cut(s)	227, 332
HpyAV	CCTTC	2 cut(s)	40, 607
HpyCH4V	TGCA	8 cut(s)	17, 150, 221, 270, 380, 454, 534, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 276, 460
HpyF3I	CTNAG	3 cut(s)	123, 252, 543
Hsp92II	CATG	7 cut(s)	176, 201, 310, 380, 604, 634, 713
HspAI	GCGC	3 cut(s)	25, 343, 570
Kzo9I	GATC	2 cut(s)	49, 435
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	3 cut(s)	205, 466, 472
LweI	GCATC	3 cut(s)	82, 203, 472
MalI	GATC	2 cut(s)	51, 437
MboI	GATC	2 cut(s)	49, 435
MboII	GAAGA	3 cut(s)	44, 47, 398
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	2 cut(s)	49, 435
MlsI	TGGCCA	3 cut(s)	171, 588, 599
MluCI	AATT	8 cut(s)	82, 145, 264, 411, 458, 467, 519, 608
MluNI	TGGCCA	3 cut(s)	171, 588, 599
MnlI	CCTC	8 cut(s)	4, 25, 64, 118, 247, 296, 505, 552
Mox20I	TGGCCA	3 cut(s)	171, 588, 599
Mph1103I	ATGCAT	1 cut(s)	382
MscI	TGGCCA	3 cut(s)	171, 588, 599
MseI	TTAA	2 cut(s)	393, 495
MslI	CAYNNNNRTG	1 cut(s)	199
Msp20I	TGGCCA	3 cut(s)	171, 588, 599
MspI	CCGG	2 cut(s)	464, 680
MspR9I	CCNGG	1 cut(s)	680
MunI	CAATTG	1 cut(s)	458
Mva1269I	GAATGC	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	191, 276, 460
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	2 cut(s)	49, 435
NlaIII	CATG	7 cut(s)	176, 201, 310, 380, 604, 634, 713
NlaIV	GGNNCC	2 cut(s)	424, 477
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	548
PctI	GAATGC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	328, 507, 619
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	3 cut(s)	220, 456, 487
PpuMI	RGGWCCY	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	424, 477
PspPI	GGNCC	2 cut(s)	127, 476
PspPPI	RGGWCCY	1 cut(s)	476
PspXI	VCTCGAGB	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	49, 435
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	393, 495
SatI	GCNGC	3 cut(s)	219, 455, 486
Sau3AI	GATC	2 cut(s)	49, 435
Sau96I	GGNCC	2 cut(s)	127, 476
ScrFI	CCNGG	1 cut(s)	680
SetI	ASST	8 cut(s)	15, 104, 241, 258, 481, 618, 692, 706
SfaNI	GCATC	3 cut(s)	82, 203, 472
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	2 cut(s)	127, 476
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	8 cut(s)	82, 145, 264, 411, 458, 467, 519, 608
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	548
StyD4I	CCNGG	1 cut(s)	678
TaqI	TCGA	4 cut(s)	69, 301, 510, 657
TasI	AATT	8 cut(s)	82, 145, 264, 411, 458, 467, 519, 608
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	328, 507, 619
Tru1I	TTAA	2 cut(s)	393, 495
Tru9I	TTAA	2 cut(s)	393, 495
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	3 cut(s)	218, 454, 485
TspDTI	ATGAA	4 cut(s)	99, 124, 323, 355
TspRI	CASTG	1 cut(s)	345
Van91I	CCANNNNNTGG	1 cut(s)	595
VpaK11BI	GGWCC	2 cut(s)	127, 476
XapI	RAATTY	2 cut(s)	264, 519
XceI	RCATGY	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.