Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005196

Physical Location & Seq

Genomic Coordinates Forward (+)

38023712 .. 38024319

Gene Structure 608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG190500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATATTAGGGGTTGCAAAACAACGCAGTTCTGAAAGTACTTGTGAGAAAGACCTTCTACAAATGATCCTTGAGGGAGCCAAAAACTATGGTGACGCAGATAGTCTATTTTCAGGTATCTCCAAGGATAATTTCATAGTGGATAATTGCAAGAGTATATACTTTGCTGGCCATGAGACCACTGCAATAAGAGCATCATGGAGCTTGATGTTATTGGCTGCATATCCTGAGTGGCAAACTCGTGCTCGTGCTGAGGTGCTTGAAATTTGCCGGGTTGCCGTTCCCGATGCTGATATGCTTCGAAACATGAAAACATTGAATATGGTGATTCAAGAAACATTGCGCCTCTATCCCCCAGCAACATATGTCATAAGGCAACCCAAAAGGAATGAATCTTCAGATTCCAATCTCAATACTCCAGCAACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

143

Amino Acids

16.04

Weight (kDa)

5.84

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	9 - 126	6.8e-21	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005196)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09110 FvH4_7g09111 FvH4_7g09111
malus_domestica	MD02G1221300.v1.1 MD07G1095000.v1.1 MD07G1095100.v1.1
prunus_persica	Prupe.2G119500_v2.0.a1 Prupe.2G119600_v2.0.a1 Prupe.2G119700_v2.0.a1 Prupe.6G038000_v2.0.a1
pyrus_communis	pycom02g18640 pycom07g07830 pycom07g07850
rosa_chinensis	RchiOBHm_Chr1g0344981
rosa_laevigata	RLG00000028863 RLG00000028864
rosa_multiflora	Rmu_co8441511.1_g000001 Rmu_sc0001143.1_g000030 Rmu_sc0008167.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309450 Rroxscaffold_4G00309480
rosa_rugosa	Rorug01G0175400 Rorug01G0175500
rosa_samantha	Rh1AG193300 Rh1BG159700 Rh1BG159900 Rh1CG178400 Rh1DG190500 Rh1DG190600
rosa_wichuraiana	Rw1G015920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	263, 319, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	104, 337
AsuII	TTCGAA	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	171
BauI	CACGAG	2 cut(s)	240, 246
Bbv12I	GWGCWC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
BmcAI	AGTACT	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	203, 277
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	405
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	2 cut(s)	219, 243
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	220, 244
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	61
BspT104I	TTCGAA	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	66
BssSI	CACGAG	2 cut(s)	240, 246
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	2 cut(s)	240, 246
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	228, 252
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	345
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	4 cut(s)	173, 198, 307, 429
CviJI	RGCY	4 cut(s)	80, 171, 204, 218
CviKI_1	RGCY	4 cut(s)	80, 171, 204, 218
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	2 cut(s)	228, 252
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	4 cut(s)	176, 201, 310, 432
FatI	CATG	4 cut(s)	172, 197, 306, 428
FauNDI	CATATG	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	219
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	271
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	4 cut(s)	176, 201, 310, 432
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	3 cut(s)	328, 392, 401
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	2 cut(s)	104, 337
Hpy188I	TCNGA	2 cut(s)	34, 400
Hpy188III	TCNNGA	3 cut(s)	227, 284, 332
HpyAV	CCTTC	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	17, 150, 185, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	228, 252
Hsp92II	CATG	4 cut(s)	176, 201, 310, 432
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	77, 201
LpnPI	CCDG	5 cut(s)	99, 153, 240, 284, 369
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	2 cut(s)	203, 277
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	3 cut(s)	130, 145, 264
MluNI	TGGCCA	1 cut(s)	171
MnlI	CCTC	3 cut(s)	67, 247, 356
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	272
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	4 cut(s)	176, 201, 310, 432
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	301
PfeI	GAWTC	3 cut(s)	328, 392, 401
PkrI	GCNGC	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	4 cut(s)	57, 118, 206, 258
SfaNI	GCATC	2 cut(s)	203, 277
SfuI	TTCGAA	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	3 cut(s)	130, 145, 264
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	123
TaqI	TCGA	1 cut(s)	301
TasI	AATT	3 cut(s)	130, 145, 264
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	3 cut(s)	328, 392, 401
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	124, 323, 405
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.