Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005196

Physical Location & Seq

Genomic Coordinates Forward (+)

7140169 .. 7141775

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGATGGTAAGATCCTGGGAGCGTAAAATCGAAAGTGAGGGAGGAAGTTCAGTCTTTAGAGTGGATGATTATTTGAGAAGCTTGTCAGCAGATATCATATCTAGAGCATCCTTTGGAAGTAATTATTTACAAGGGAAAGAAATTTTTTTAAAGCTCAGAACTCTTCAGAAAATCATGTCGAATGGAAACATTGGGGTTCCTGGTGCAAGATACCTGCCAACGGAAAACAACAGACAGATAGGGAGATTGGAGAACGAGATCCACTCAATGATCTTAAAGGCTGTGAAGCAACGCAGTACTGAAGCTACTCATGAGAAGGACCTTATGCAAATGATACTAGAGGGGGCCAAAAATTATGATGATGCTGATAACCTATTTTCAGGTTACTCCCGTGATAGTTTCATAGTGGATAATTGCAAAAGTATTTACTTTGCTGGCCATGAAACCACGGCGGTCACAGCATCATGGAGCTTGATGTTGTTAGCTACACATCCAGAGTGGCAAGCTCGTGTCCGTGCTGAGGTGCTTGAAATTTTCAGGGATGGTATTCCAGATGCTGATATGTTTCGAAGCATGAAAACATTGAATATGGTGATTCAAGAAACCTTGCGCCTGTACCCACCAGCAGTGTTTATTGTAAGACAAGCCCTCAAAGATATTGAGCTCAACAACATCGTGGTTCCCAAGGGAACAAACATTCAGATTCCAGTCCCAATATTGCAGCAACTGCCTGATGTCTGGGGCCCTGATGCCCTTCAATTCAATCCGGAAAGATTTAAGCATGGAATCGTTGCTGCCTGCAAGTCTCCTGAGGCTTATATGCCATTTGGATTTGGTCCTCGGATTTGTGTTGGCAAAAACTTAGCAATGACGGAATTGAAGGTGATTCTGTCTCTTATTCTTTCCAAGTTTTGTTTCTCACTCTCCCCGGCATACCAGCACTCGCCAGCTTTTAGGTTGGTCATTGAACCTGAGCATGGAGTAATTCTCCATCTTAAGAGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

336

Amino Acids

37.9

Weight (kDa)

8.57

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005196)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09110 FvH4_7g09111 FvH4_7g09111
malus_domestica	MD02G1221300.v1.1 MD07G1095000.v1.1 MD07G1095100.v1.1
prunus_persica	Prupe.2G119500_v2.0.a1 Prupe.2G119600_v2.0.a1 Prupe.2G119700_v2.0.a1 Prupe.6G038000_v2.0.a1
pyrus_communis	pycom02g18640 pycom07g07830 pycom07g07850
rosa_chinensis	RchiOBHm_Chr1g0344981
rosa_laevigata	RLG00000028863 RLG00000028864
rosa_multiflora	Rmu_co8441511.1_g000001 Rmu_sc0001143.1_g000030 Rmu_sc0008167.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309450 Rroxscaffold_4G00309480
rosa_rugosa	Rorug01G0175400 Rorug01G0175500
rosa_samantha	Rh1AG193300 Rh1BG159700 Rh1BG159900 Rh1CG178400 Rh1DG190500 Rh1DG190600
rosa_wichuraiana	Rw1G015920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	766
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	2 cut(s)	6, 253
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	141, 531
AcuI	CTGAAG	2 cut(s)	149, 321
AfaI	GTAC	2 cut(s)	298, 617
AfiI	CCNNNNNNNGG	3 cut(s)	220, 520, 977
AflII	CTTAAG	1 cut(s)	995
AgsI	TTSAA	7 cut(s)	530, 586, 599, 758, 763, 880, 968
AjnI	CCWGG	2 cut(s)	14, 199
AjuI	GAANNNNNNNTTGG	2 cut(s)	899, 931
AluBI	AGCT	8 cut(s)	81, 154, 305, 471, 485, 506, 664, 950
AluI	AGCT	8 cut(s)	81, 154, 305, 471, 485, 506, 664, 950
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	2 cut(s)	810, 897
AlwI	GGATC	2 cut(s)	6, 253
AlwNI	CAGNNNCTG	2 cut(s)	557, 727
Aor13HI	TCCGGA	1 cut(s)	766
AoxI	GGCC	3 cut(s)	345, 436, 742
ApaI	GGGCCC	1 cut(s)	746
ApeKI	GCWGC	2 cut(s)	721, 794
ApoI	RAATTY	2 cut(s)	141, 531
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	5 cut(s)	319, 345, 742, 743, 836
AsuC2I	CCSGG	1 cut(s)	929
AsuHPI	GGTGA	2 cut(s)	604, 895
AsuII	TTCGAA	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	319, 836
AxyI	CCTNAGG	1 cut(s)	810
BaeGI	GKGCMC	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	438
BanII	GRGCYC	2 cut(s)	666, 746
BauI	CACGAG	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	666
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	2 cut(s)	733, 781
BccI	CCATC	2 cut(s)	536, 999
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	2 cut(s)	16, 201
BcnI	CCSGG	1 cut(s)	929
BcoDI	GTCTC	2 cut(s)	810, 897
BfaI	CTAG	2 cut(s)	102, 338
BfrI	CTTAAG	1 cut(s)	995
BfuAI	ACCTGC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	722, 795
BlsI	GCNGC	2 cut(s)	723, 796
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	3 cut(s)	16, 201, 929
Bme18I	GGWCC	2 cut(s)	319, 836
BmgT120I	GGNCC	5 cut(s)	319, 345, 742, 743, 836
BmiI	GGNNCC	5 cut(s)	198, 346, 681, 743, 744
BmrFI	CCNGG	3 cut(s)	16, 201, 929
BmsI	GCATC	5 cut(s)	116, 352, 470, 544, 739
BplI	GAGNNNNNCTC	4 cut(s)	248, 280, 972, 1004
Bpu10I	CCTNAGC	2 cut(s)	519, 972
Bpu14I	TTCGAA	1 cut(s)	568
BpuMI	CCSGG	1 cut(s)	929
BsaJI	CCNNGG	5 cut(s)	15, 447, 684, 839, 927
BsaWI	WCCGGW	1 cut(s)	766
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 520, 977
Bse1I	ACTGG	1 cut(s)	707
Bse21I	CCTNAGG	1 cut(s)	810
Bse3DI	GCAATG	1 cut(s)	873
BseAI	TCCGGA	1 cut(s)	766
BseBI	CCWGG	2 cut(s)	16, 201
BseDI	CCNNGG	5 cut(s)	15, 447, 684, 839, 927
BseGI	GGATG	4 cut(s)	70, 107, 490, 547
BseLI	CCNNNNNNNGG	3 cut(s)	220, 520, 977
BseMI	GCAATG	1 cut(s)	873
BseMII	CTCAG	4 cut(s)	169, 510, 801, 963
BseNI	ACTGG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	746
BseXI	GCAGC	2 cut(s)	733, 781
BshFI	GGCC	3 cut(s)	347, 438, 744
BsiHKAI	GWGCWC	1 cut(s)	666
BsiSI	CCGG	2 cut(s)	767, 929
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	3 cut(s)	220, 520, 977
BsmAI	GTCTC	2 cut(s)	810, 897
BsmFI	GGGAC	1 cut(s)	695
BsnI	GGCC	3 cut(s)	347, 438, 744
Bsp119I	TTCGAA	1 cut(s)	568
Bsp120I	GGGCCC	1 cut(s)	742
Bsp1286I	GDGCHC	2 cut(s)	666, 746
Bsp13I	TCCGGA	1 cut(s)	766
Bsp143I	GATC	3 cut(s)	11, 258, 270
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	3 cut(s)	347, 438, 744
BspCNI	CTCAG	4 cut(s)	168, 511, 802, 964
BspEI	TCCGGA	1 cut(s)	766
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	5 cut(s)	198, 346, 681, 743, 744
BspMI	ACCTGC	1 cut(s)	222
BspPI	GGATC	2 cut(s)	6, 253
BspT104I	TTCGAA	1 cut(s)	568
BspTI	CTTAAG	1 cut(s)	995
BsrDI	GCAATG	1 cut(s)	873
BsrI	ACTGG	1 cut(s)	707
BssECI	CCNNGG	5 cut(s)	15, 447, 684, 839, 927
BssMI	GATC	3 cut(s)	11, 258, 270
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	684
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	2 cut(s)	16, 201
Bst6I	CTCTTC	1 cut(s)	168
BstAFI	CTTAAG	1 cut(s)	995
BstAPI	GCANNNNNTGC	1 cut(s)	727
BstBI	TTCGAA	1 cut(s)	568
BstC8I	GCNNGC	4 cut(s)	436, 504, 799, 948
BstDEI	CTNAG	5 cut(s)	155, 519, 810, 862, 972
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	4 cut(s)	70, 107, 490, 547
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	3 cut(s)	14, 261, 273
BstMAI	GTCTC	2 cut(s)	810, 897
BstMBI	GATC	3 cut(s)	11, 258, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 727
BstNI	CCWGG	2 cut(s)	16, 201
BstSCI	CCNGG	3 cut(s)	14, 199, 927
BstSLI	GKGCMC	1 cut(s)	746
BstV1I	GCAGC	2 cut(s)	733, 781
BstX2I	RGATCY	2 cut(s)	11, 258
BstYI	RGATCY	2 cut(s)	11, 258
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	347, 438, 744
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	4 cut(s)	70, 107, 490, 547
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	633
BveI	ACCTGC	1 cut(s)	222
Cac8I	GCNNGC	4 cut(s)	436, 504, 799, 948
CaiI	CAGNNNCTG	2 cut(s)	557, 727
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	5 cut(s)	319, 345, 742, 743, 836
Csp6I	GTAC	2 cut(s)	297, 616
CviAII	CATG	7 cut(s)	175, 311, 440, 465, 574, 782, 977
CviQI	GTAC	2 cut(s)	297, 616
DdeI	CTNAG	5 cut(s)	155, 519, 810, 862, 972
DpnI	GATC	3 cut(s)	13, 260, 272
DpnII	GATC	3 cut(s)	11, 258, 270
DraI	TTTAAA	1 cut(s)	150
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	1 cut(s)	684
Eco24I	GRGCYC	2 cut(s)	666, 746
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	319, 836
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	2 cut(s)	149, 321
Eco81I	CCTNAGG	1 cut(s)	810
EcoICRI	GAGCTC	1 cut(s)	664
EcoO109I	RGGNCCY	3 cut(s)	319, 742, 743
EcoRII	CCWGG	2 cut(s)	14, 199
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	684
EcoT38I	GRGCYC	2 cut(s)	666, 746
ErhI	CCWWGG	1 cut(s)	684
FaeI	CATG	7 cut(s)	178, 314, 443, 468, 577, 785, 980
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	7 cut(s)	174, 310, 439, 464, 573, 781, 976
Fnu4HI	GCNGC	2 cut(s)	722, 795
FokI	GGATG	4 cut(s)	77, 94, 477, 554
FriOI	GRGCYC	2 cut(s)	666, 746
Fsp4HI	GCNGC	2 cut(s)	722, 795
FspBI	CTAG	2 cut(s)	102, 338
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	2 cut(s)	722, 795
HaeIII	GGCC	3 cut(s)	347, 438, 744
HapII	CCGG	2 cut(s)	767, 929
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	7 cut(s)	178, 314, 443, 468, 577, 785, 980
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	4 cut(s)	595, 703, 786, 886
HpaII	CCGG	2 cut(s)	767, 929
HphI	GGTGA	2 cut(s)	604, 895
Hpy188I	TCNGA	4 cut(s)	158, 168, 702, 843
Hpy188III	TCNNGA	7 cut(s)	102, 311, 494, 551, 599, 767, 809
HpyAV	CCTTC	3 cut(s)	310, 764, 874
HpyCH4V	TGCA	5 cut(s)	206, 328, 417, 721, 801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 727
HpyF3I	CTNAG	5 cut(s)	155, 519, 810, 862, 972
Hsp92II	CATG	7 cut(s)	178, 314, 443, 468, 577, 785, 980
HspAI	GCGC	1 cut(s)	610
Kpn2I	TCCGGA	1 cut(s)	766
Kzo9I	GATC	3 cut(s)	11, 258, 270
LmnI	GCTCC	2 cut(s)	19, 468
Lsp1109I	GCAGC	2 cut(s)	733, 781
LweI	GCATC	5 cut(s)	116, 352, 470, 544, 739
MaeI	CTAG	2 cut(s)	102, 338
MaeIII	GTNAC	2 cut(s)	383, 454
MalI	GATC	3 cut(s)	13, 260, 272
MboI	GATC	3 cut(s)	11, 258, 270
MboII	GAAGA	1 cut(s)	155
MflI	RGATCY	2 cut(s)	11, 258
MhlI	GDGCHC	2 cut(s)	666, 746
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	8 cut(s)	121, 141, 352, 412, 531, 758, 875, 984
MluNI	TGGCCA	1 cut(s)	438
MnlI	CCTC	7 cut(s)	31, 35, 334, 514, 659, 805, 849
Mox20I	TGGCCA	1 cut(s)	438
MroI	TCCGGA	1 cut(s)	766
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	4 cut(s)	149, 275, 777, 996
Msp20I	TGGCCA	1 cut(s)	438
MspCI	CTTAAG	1 cut(s)	995
MspI	CCGG	2 cut(s)	767, 929
MspR9I	CCNGG	3 cut(s)	16, 201, 929
MvaI	CCWGG	2 cut(s)	16, 201
MwoI	GCNNNNNNNGC	2 cut(s)	458, 727
NciI	CCSGG	1 cut(s)	929
NdeII	GATC	3 cut(s)	11, 258, 270
NlaIII	CATG	7 cut(s)	178, 314, 443, 468, 577, 785, 980
NlaIV	GGNNCC	5 cut(s)	198, 346, 681, 743, 744
NmuCI	GTSAC	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	568
PagI	TCATGA	1 cut(s)	310
PfeI	GAWTC	4 cut(s)	595, 703, 786, 886
PkrI	GCNGC	2 cut(s)	723, 796
PpuMI	RGGWCCY	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	666
Psp5II	RGGWCCY	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	14, 199
PspGI	CCWGG	2 cut(s)	14, 199
PspN4I	GGNNCC	5 cut(s)	198, 346, 681, 743, 744
PspOMI	GGGCCC	1 cut(s)	742
PspPI	GGNCC	5 cut(s)	319, 345, 742, 743, 836
PspPPI	RGGWCCY	1 cut(s)	319
PstNI	CAGNNNCTG	2 cut(s)	557, 727
PsuI	RGATCY	2 cut(s)	11, 258
RsaI	GTAC	2 cut(s)	298, 617
RsaNI	GTAC	2 cut(s)	297, 616
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	4 cut(s)	149, 275, 777, 996
SatI	GCNGC	2 cut(s)	722, 795
Sau3AI	GATC	3 cut(s)	11, 258, 270
Sau96I	GGNCC	5 cut(s)	319, 345, 742, 743, 836
ScaI	AGTACT	1 cut(s)	298
ScrFI	CCNGG	3 cut(s)	16, 201, 929
SduI	GDGCHC	2 cut(s)	666, 746
SfaNI	GCATC	5 cut(s)	116, 352, 470, 544, 739
SfuI	TTCGAA	1 cut(s)	568
SinI	GGWCC	2 cut(s)	319, 836
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
Sse9I	AATT	8 cut(s)	121, 141, 352, 412, 531, 758, 875, 984
SsiI	CCGC	1 cut(s)	452
SspI	AATATT	1 cut(s)	717
SspMI	CTAG	2 cut(s)	102, 338
SstI	GAGCTC	1 cut(s)	666
StyD4I	CCNGG	3 cut(s)	14, 199, 927
StyI	CCWWGG	1 cut(s)	684
TaqI	TCGA	3 cut(s)	30, 179, 568
TasI	AATT	8 cut(s)	121, 141, 352, 412, 531, 758, 875, 984
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	4 cut(s)	595, 703, 786, 886
Tru1I	TTAA	4 cut(s)	149, 275, 777, 996
Tru9I	TTAA	4 cut(s)	149, 275, 777, 996
TscAI	CASTG	1 cut(s)	633
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	2 cut(s)	721, 794
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	3 cut(s)	391, 456, 590
TspGWI	ACGGA	3 cut(s)	236, 503, 887
TspRI	CASTG	1 cut(s)	633
Vha464I	CTTAAG	1 cut(s)	995
VpaK11BI	GGWCC	2 cut(s)	319, 836
XapI	RAATTY	2 cut(s)	141, 531
XbaI	TCTAGA	1 cut(s)	101
XspI	CTAG	2 cut(s)	102, 338
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.