Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008167.1

Orthogroup ID

OG0005196

Physical Location & Seq

Genomic Coordinates Reverse (-)

1337 .. 2107

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008167.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggtgaaggaaattagcatgtgcacatctttgattttaggaaggcctgcttatatgtctaaggacttgaagcccctattaggacaaggcattatctcttcaagtggccaaacttggtcacaccagaggaaaatcatttctcctgaattctactttgataaggttaaggatatggtcgatttaatggtggactctacagcgtcactattaagatcttgggaaagcaaagttgaaagtgagggaggaatggcattgtttaggattgatcaagatttgagaagcttgtcagcggatataatatcaagatcatcctttggaagtaattattcaaaggggaaagaaatcttttcaaagctcaggactcttcaacaagttatgtctcagggaaaccttggcattcccggcgtaagttctactggtctcacatttctccagcgcaatgctgcaggggcactaggcagcacacgggtgcgcaagggctgcaggggcagcatatggcatggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

168

Amino Acids

18.44

Weight (kDa)

9.77

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005196)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09110 FvH4_7g09111 FvH4_7g09111
malus_domestica	MD02G1221300.v1.1 MD07G1095000.v1.1 MD07G1095100.v1.1
prunus_persica	Prupe.2G119500_v2.0.a1 Prupe.2G119600_v2.0.a1 Prupe.2G119700_v2.0.a1 Prupe.6G038000_v2.0.a1
pyrus_communis	pycom02g18640 pycom07g07830 pycom07g07850
rosa_chinensis	RchiOBHm_Chr1g0344981
rosa_laevigata	RLG00000028863 RLG00000028864
rosa_multiflora	Rmu_co8441511.1_g000001 Rmu_sc0001143.1_g000030 Rmu_sc0008167.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309450 Rroxscaffold_4G00309480
rosa_rugosa	Rorug01G0175400 Rorug01G0175500
rosa_samantha	Rh1AG193300 Rh1BG159700 Rh1BG159900 Rh1CG178400 Rh1DG190500 Rh1DG190600
rosa_wichuraiana	Rw1G015920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	473
AciI	CCGC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	6 cut(s)	70, 102, 233, 330, 351, 368
AleI	CACNNNNGTG	1 cut(s)	467
AluBI	AGCT	2 cut(s)	282, 355
AluI	AGCT	2 cut(s)	282, 355
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	384, 425
Alw44I	GTGCAC	1 cut(s)	22
AoxI	GGCC	2 cut(s)	44, 106
ApaLI	GTGCAC	1 cut(s)	22
ApeKI	GCWGC	4 cut(s)	443, 459, 480, 489
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	438, 474
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	2 cut(s)	26, 454
BalI	TGGCCA	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	4 cut(s)	430, 467, 471, 501
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	2 cut(s)	384, 425
BfaI	CTAG	1 cut(s)	455
BfmI	CTRYAG	3 cut(s)	195, 444, 481
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	4 cut(s)	444, 460, 481, 490
BlsI	GCNGC	4 cut(s)	445, 461, 482, 491
Bme1390I	CCNGG	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	2 cut(s)	370, 395
BseNI	ACTGG	1 cut(s)	421
BseSI	GKGCMC	2 cut(s)	26, 454
BseXI	GCAGC	4 cut(s)	430, 467, 471, 501
BshFI	GGCC	2 cut(s)	46, 108
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	2 cut(s)	384, 425
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	46, 108
Bso31I	GGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	26, 454
Bsp143I	GATC	3 cut(s)	212, 265, 305
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	46, 108
BspCNI	CTCAG	2 cut(s)	369, 394
BspMAI	CTGCAG	2 cut(s)	448, 485
BspTNI	GGTCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	3 cut(s)	212, 265, 305
BssT1I	CCWWGG	1 cut(s)	391
Bst6I	CTCTTC	2 cut(s)	103, 369
BstAPI	GCANNNNNTGC	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	60, 356, 381
BstF5I	GGATG	1 cut(s)	308
BstHHI	GCGC	2 cut(s)	438, 474
BstKTI	GATC	3 cut(s)	215, 268, 308
BstMAI	GTCTC	2 cut(s)	384, 425
BstMBI	GATC	3 cut(s)	212, 265, 305
BstMWI	GCNNNNNNNGC	5 cut(s)	402, 449, 480, 486, 489
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	3 cut(s)	195, 444, 481
BstSLI	GKGCMC	2 cut(s)	26, 454
BstV1I	GCAGC	4 cut(s)	430, 467, 471, 501
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	46, 108
BtsCI	GGATG	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	2 cut(s)	438, 474
CseI	GACGC	1 cut(s)	189
CviAII	CATG	2 cut(s)	19, 500
CviJI	RGCY	7 cut(s)	46, 73, 108, 282, 355, 480, 504
CviKI_1	RGCY	7 cut(s)	46, 73, 108, 282, 355, 480, 504
DdeI	CTNAG	3 cut(s)	60, 356, 381
DpnI	GATC	3 cut(s)	214, 267, 307
DpnII	GATC	3 cut(s)	212, 265, 305
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	103, 369
EarI	CTCTTC	2 cut(s)	103, 369
Eco130I	CCWWGG	1 cut(s)	391
Eco147I	AGGCCT	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	2 cut(s)	22, 503
FaiI	YATR	9 cut(s)	20, 54, 56, 173, 296, 377, 494, 496, 501
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FatI	CATG	2 cut(s)	18, 499
FauNDI	CATATG	1 cut(s)	494
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	444, 460, 481, 490
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	4 cut(s)	444, 460, 481, 490
FspBI	CTAG	1 cut(s)	455
FspI	TGCGCA	1 cut(s)	473
GlaI	GCGC	2 cut(s)	437, 473
GluI	GCNGC	4 cut(s)	444, 460, 481, 490
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	46, 108
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	438, 474
Hin1II	CATG	2 cut(s)	22, 503
Hin6I	GCGC	2 cut(s)	436, 472
HinP1I	GCGC	2 cut(s)	436, 472
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	2 cut(s)	191, 361
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	24, 190
Hpy188III	TCNNGA	4 cut(s)	143, 269, 303, 358
Hpy8I	GTNNAC	2 cut(s)	24, 190
HpyAV	CCTTC	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	24, 446, 483
HpyF10VI	GCNNNNNNNGC	5 cut(s)	402, 449, 480, 486, 489
HpyF3I	CTNAG	3 cut(s)	60, 356, 381
Hsp92II	CATG	2 cut(s)	22, 503
HspAI	GCGC	2 cut(s)	436, 472
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	212, 265, 305
Lsp1109I	GCAGC	4 cut(s)	430, 467, 471, 501
MaeI	CTAG	1 cut(s)	455
MaeIII	GTNAC	2 cut(s)	117, 201
MalI	GATC	3 cut(s)	214, 267, 307
MboI	GATC	3 cut(s)	212, 265, 305
MboII	GAAGA	2 cut(s)	90, 356
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	26, 454
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	3 cut(s)	12, 146, 322
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	185, 355
MnlI	CCTC	3 cut(s)	120, 232, 236
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	3 cut(s)	165, 182, 209
MslI	CAYNNNNRTG	1 cut(s)	467
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	396
MwoI	GCNNNNNNNGC	5 cut(s)	402, 449, 480, 486, 489
NciI	CCSGG	1 cut(s)	402
NdeI	CATATG	1 cut(s)	494
NdeII	GATC	3 cut(s)	212, 265, 305
NlaIII	CATG	2 cut(s)	22, 503
NmuCI	GTSAC	2 cut(s)	117, 201
NsbI	TGCGCA	1 cut(s)	473
NspI	RCATGY	1 cut(s)	22
OliI	CACNNNNGTG	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	46
PctI	GAATGC	1 cut(s)	396
PkrI	GCNGC	4 cut(s)	445, 461, 482, 491
PleI	GAGTC	2 cut(s)	185, 355
PpsI	GAGTC	2 cut(s)	185, 355
PstI	CTGCAG	2 cut(s)	448, 485
PsuI	RGATCY	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	3 cut(s)	165, 182, 209
SatI	GCNGC	4 cut(s)	444, 460, 481, 490
Sau3AI	GATC	3 cut(s)	212, 265, 305
SchI	GAGTC	2 cut(s)	185, 355
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	2 cut(s)	26, 454
SetI	ASST	4 cut(s)	165, 284, 357, 393
SfcI	CTRYAG	3 cut(s)	195, 444, 481
SmiMI	CAYNNNNRTG	1 cut(s)	467
Sse9I	AATT	3 cut(s)	12, 146, 322
SseBI	AGGCCT	1 cut(s)	46
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	455
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	391
TaqI	TCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	12, 146, 322
Tru1I	TTAA	3 cut(s)	165, 182, 209
Tru9I	TTAA	3 cut(s)	165, 182, 209
TseFI	GTSAC	2 cut(s)	117, 201
TseI	GCWGC	4 cut(s)	443, 459, 480, 489
Tsp45I	GTSAC	2 cut(s)	117, 201
VneI	GTGCAC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.