Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005196

Physical Location & Seq

Genomic Coordinates Reverse (-)

29471128 .. 29474599

Gene Structure 3472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCAGCAGTGGTGATACTATCAGTGTTGTTGGGTGGGTTTGTGATATGGGGTTTATATCTCTATGAGGTTTTGGTGCTAGAGCCAAAGAGGCTAAGATCAAAGCTTGAAAAGCAAGGGATCAGAGGGCCTCCTCCTTCATCAATACTCCTGGGGAATATCCCAGAAATGAAGAAGATCAAAATCGAGGCGATGAAGAAGCCAGCAGCTACAACAACAGAAGCAAAGGATCACCCACTTTCTATTGCTCATGATTGGCCTTCAAATCTATTCCCTCATATTGCGCAGTGGCGAAAGGAATATGCGTCACTATTAAGATCTTGGGAAAGCAAAGTTGAAAGTGAGGGAGGAATGGCATTGTTTAGGATTGATCAAGATTTGAGAAGCTTGTCAGCGGATATAATATCAAGATCATCCTTTGGAAGTAATTATTCAAAGGGGAAAGAAATCTTTTCAAAGCTCAGGACTCTTCAACAAGTTATGTCTCAGGGAAACCTTGGCATTCCTGGCGTAAGGCACTTGCCAACAAAGAGGAACAGAGAGATAAGGAGTCTAGAGAACGAGATTCACTCAATGATACTGGAGGTTGCAAAAAAGCGCAATGAGGCTACTTATGAGAAGGATCTTCTTCAAATGATACTCGAGGGAGCAAAAAATTACTCTGATGCTGATAGCTTTTTTTCATCTGGTATGTCTGAGGACCAGTTCATAGTGGATAATTGCAAGAATATATATTTTGCTGGCCATGAGACCACCGCCATCACAGCATCATGGTGCTTGCTGTTGTTGGCTGCATATCCAGAGTGGCAAGCTCGTGTTCGTGCTGAGGTGCTTGAAATTTGCAAGGATGGCATTCCAAATGCCGATGTGCTTCGAGGCATGAAAACATTGACTATGGTGATTCAAGAAACACTGCGCTTGTACTCACCAGCAACTTTCATTGTAAGACATGCATTGGAAGATATTAAACTCAAAGATATTATACTTCCCAAAGGAACCACCATTCAGATCCCAATCTCAATGGTGCAGCAATTGCCAGAATTATGGGGACCTGATGCTGCTGACTTTAATCCCAATAGATTCGAGGATGGAATTCGTGGGGCTTGCAAGTTTCCTCCGGCCTATTTCCCATTTGGATTTGGCGCTCGCATTTGTGTTGGCCAAAACTTGGCCATGACAGAATTGAAGGTGATTCTGTCTCTCATATTATCCAAGTTATCATTCTCGCTCGACCCTGCATACCAACACAACCCGGTTTTTAGGTTGGTTATTGAACCTGAACATGGAGTAAGTCTCCATGTGAGCAGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

438

Amino Acids

49.1

Weight (kDa)

8.62

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	97 - 421	7.6e-62	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005196)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09110 FvH4_7g09111 FvH4_7g09111
malus_domestica	MD02G1221300.v1.1 MD07G1095000.v1.1 MD07G1095100.v1.1
prunus_persica	Prupe.2G119500_v2.0.a1 Prupe.2G119600_v2.0.a1 Prupe.2G119700_v2.0.a1 Prupe.6G038000_v2.0.a1
pyrus_communis	pycom02g18640 pycom07g07830 pycom07g07850
rosa_chinensis	RchiOBHm_Chr1g0344981
rosa_laevigata	RLG00000028863 RLG00000028864
rosa_multiflora	Rmu_co8441511.1_g000001 Rmu_sc0001143.1_g000030 Rmu_sc0008167.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309450 Rroxscaffold_4G00309480
rosa_rugosa	Rorug01G0175400 Rorug01G0175500
rosa_samantha	Rh1AG193300 Rh1BG159700 Rh1BG159900 Rh1CG178400 Rh1DG190500 Rh1DG190600
rosa_wichuraiana	Rw1G015920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	1168
AciI	CCGC	2 cut(s)	395, 756
AclWI	GGATC	4 cut(s)	128, 237, 630, 1003
AcoI	YGGCCR	3 cut(s)	742, 1159, 1170
AcsI	RAATTY	2 cut(s)	837, 1092
AfaI	GTAC	1 cut(s)	923
AfiI	CCNNNNNNNGG	2 cut(s)	1168, 1283
AjnI	CCWGG	2 cut(s)	150, 505
AjuI	GAANNNNNNNTTGG	2 cut(s)	1205, 1237
AluBI	AGCT	6 cut(s)	106, 209, 387, 460, 675, 812
AluI	AGCT	6 cut(s)	106, 209, 387, 460, 675, 812
Alw26I	GTCTC	4 cut(s)	489, 743, 1203, 1298
AlwI	GGATC	4 cut(s)	128, 237, 630, 1003
Ama87I	CYCGRG	1 cut(s)	641
AoxI	GGCC	6 cut(s)	128, 257, 742, 1119, 1159, 1170
ApeKI	GCWGC	5 cut(s)	5, 206, 791, 1027, 1058
ApoI	RAATTY	2 cut(s)	837, 1092
AspLEI	GCGC	4 cut(s)	286, 600, 918, 1145
AspS9I	GGNCC	3 cut(s)	128, 700, 1049
AsuC2I	CCSGG	1 cut(s)	1253
AsuHPI	GGTGA	5 cut(s)	25, 224, 910, 918, 1201
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	2 cut(s)	700, 1049
BalI	TGGCCA	3 cut(s)	744, 1161, 1172
BauI	CACGAG	1 cut(s)	813
BbvCI	CCTCAGC	1 cut(s)	825
BbvI	GCAGC	5 cut(s)	17, 218, 778, 1039, 1045
BccI	CCATC	3 cut(s)	767, 842, 1082
BciT130I	CCWGG	2 cut(s)	152, 507
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	1253
BcoDI	GTCTC	4 cut(s)	489, 743, 1203, 1298
BfaI	CTAG	2 cut(s)	80, 554
BfoI	RGCGCY	1 cut(s)	1146
BglI	GCCNNNNNGGC	1 cut(s)	91
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	5 cut(s)	6, 207, 792, 1028, 1059
BlsI	GCNGC	5 cut(s)	7, 208, 793, 1029, 1060
Bme1390I	CCNGG	3 cut(s)	152, 507, 1253
Bme18I	GGWCC	2 cut(s)	700, 1049
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	3 cut(s)	128, 700, 1049
BmiI	GGNNCC	2 cut(s)	997, 1050
BmrFI	CCNGG	3 cut(s)	152, 507, 1253
BmsI	GCATC	3 cut(s)	655, 776, 1045
BplI	GAGNNNNNCTC	4 cut(s)	554, 586, 1278, 1310
BpmI	CTGGAG	1 cut(s)	602
Bpu10I	CCTNAGC	2 cut(s)	461, 825
BpuMI	CCSGG	1 cut(s)	1253
BsaBI	GATNNNNATC	2 cut(s)	182, 1013
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	2 cut(s)	151, 496
Bsc4I	CCNNNNNNNGG	2 cut(s)	1168, 1283
Bse1I	ACTGG	2 cut(s)	585, 703
Bse3DI	GCAATG	1 cut(s)	607
Bse8I	GATNNNNATC	2 cut(s)	182, 1013
BseBI	CCWGG	2 cut(s)	152, 507
BseDI	CCNNGG	2 cut(s)	151, 496
BseGI	GGATG	3 cut(s)	413, 853, 1093
BseJI	GATNNNNATC	2 cut(s)	182, 1013
BseLI	CCNNNNNNNGG	2 cut(s)	1168, 1283
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	4 cut(s)	475, 500, 687, 816
BseNI	ACTGG	2 cut(s)	585, 703
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	5 cut(s)	17, 218, 778, 1039, 1045
BsgI	GTGCAG	1 cut(s)	1046
BshFI	GGCC	6 cut(s)	130, 259, 744, 1121, 1161, 1172
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	2 cut(s)	1118, 1253
BslFI	GGGAC	1 cut(s)	1062
BslI	CCNNNNNNNGG	2 cut(s)	1168, 1283
BsmAI	GTCTC	4 cut(s)	489, 743, 1203, 1298
BsmFI	GGGAC	1 cut(s)	1062
BsmI	GAATGC	2 cut(s)	501, 852
BsnI	GGCC	6 cut(s)	130, 259, 744, 1121, 1161, 1172
Bso31I	GGTCTC	1 cut(s)	743
BsoBI	CYCGRG	1 cut(s)	641
Bsp143I	GATC	9 cut(s)	98, 120, 177, 229, 317, 370, 410, 622, 1008
BspACI	CCGC	2 cut(s)	395, 756
BspANI	GGCC	6 cut(s)	130, 259, 744, 1121, 1161, 1172
BspCNI	CTCAG	4 cut(s)	474, 499, 688, 817
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	997, 1050
BspPI	GGATC	4 cut(s)	128, 237, 630, 1003
BspTNI	GGTCTC	1 cut(s)	743
BsrDI	GCAATG	1 cut(s)	607
BsrI	ACTGG	2 cut(s)	585, 703
BssECI	CCNNGG	2 cut(s)	151, 496
BssMI	GATC	9 cut(s)	98, 120, 177, 229, 317, 370, 410, 622, 1008
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	1 cut(s)	496
Bst2BI	CACGAG	1 cut(s)	813
Bst2UI	CCWGG	2 cut(s)	152, 507
Bst6I	CTCTTC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	1033
BstC8I	GCNNGC	6 cut(s)	204, 742, 779, 810, 1105, 1147
BstDEI	CTNAG	5 cut(s)	95, 461, 486, 696, 825
BstF5I	GGATG	3 cut(s)	413, 853, 1093
BstH2I	RGCGCY	1 cut(s)	1146
BstHHI	GCGC	4 cut(s)	286, 600, 918, 1145
BstKTI	GATC	9 cut(s)	101, 123, 180, 232, 320, 373, 413, 625, 1011
BstMAI	GTCTC	4 cut(s)	489, 743, 1203, 1298
BstMBI	GATC	9 cut(s)	98, 120, 177, 229, 317, 370, 410, 622, 1008
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 112, 507, 764, 849, 1033
BstNI	CCWGG	2 cut(s)	152, 507
BstNSI	RCATGY	1 cut(s)	953
BstSCI	CCNGG	3 cut(s)	150, 505, 1251
BstV1I	GCAGC	5 cut(s)	17, 218, 778, 1039, 1045
BstX2I	RGATCY	3 cut(s)	317, 622, 1008
BstXI	CCANNNNNNTGG	1 cut(s)	1044
BstYI	RGATCY	3 cut(s)	317, 622, 1008
BsuRI	GGCC	6 cut(s)	130, 259, 744, 1121, 1161, 1172
BtgZI	GCGATG	1 cut(s)	206
BtsCI	GGATG	3 cut(s)	413, 853, 1093
BtsI	GCAGTG	3 cut(s)	15, 293, 911
BtsIMutI	CAGTG	4 cut(s)	15, 30, 293, 911
Cac8I	GCNNGC	6 cut(s)	204, 742, 779, 810, 1105, 1147
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	4 cut(s)	286, 600, 918, 1145
Cfr13I	GGNCC	3 cut(s)	128, 700, 1049
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	922
CviAII	CATG	8 cut(s)	251, 746, 771, 880, 950, 1174, 1283, 1298
CviQI	GTAC	1 cut(s)	922
DdeI	CTNAG	5 cut(s)	95, 461, 486, 696, 825
DpnI	GATC	9 cut(s)	100, 122, 179, 231, 319, 372, 412, 624, 1010
DpnII	GATC	9 cut(s)	98, 120, 177, 229, 317, 370, 410, 622, 1008
EaeI	YGGCCR	3 cut(s)	742, 1159, 1170
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	743
Eco47I	GGWCC	2 cut(s)	700, 1049
Eco88I	CYCGRG	1 cut(s)	641
EcoO109I	RGGNCCY	2 cut(s)	128, 1049
EcoRI	GAATTC	1 cut(s)	1092
EcoRII	CCWGG	2 cut(s)	150, 505
EcoT14I	CCWWGG	1 cut(s)	496
EcoT22I	ATGCAT	1 cut(s)	955
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	8 cut(s)	254, 749, 774, 883, 953, 1177, 1286, 1301
FaqI	GGGAC	1 cut(s)	1062
FatI	CATG	8 cut(s)	250, 745, 770, 879, 949, 1173, 1282, 1297
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	5 cut(s)	6, 207, 792, 1028, 1059
FokI	GGATG	3 cut(s)	400, 860, 1100
Fsp4HI	GCNGC	5 cut(s)	6, 207, 792, 1028, 1059
FspBI	CTAG	2 cut(s)	80, 554
FspI	TGCGCA	1 cut(s)	285
GlaI	GCGC	4 cut(s)	285, 599, 917, 1144
GluI	GCNGC	5 cut(s)	6, 207, 792, 1028, 1059
GsuI	CTGGAG	1 cut(s)	602
HaeII	RGCGCY	1 cut(s)	1146
HaeIII	GGCC	6 cut(s)	130, 259, 744, 1121, 1161, 1172
HapII	CCGG	2 cut(s)	1118, 1253
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	4 cut(s)	286, 600, 918, 1145
Hin1II	CATG	8 cut(s)	254, 749, 774, 883, 953, 1177, 1286, 1301
Hin6I	GCGC	4 cut(s)	284, 598, 916, 1143
HinP1I	GCGC	4 cut(s)	284, 598, 916, 1143
HindIII	AAGCTT	2 cut(s)	104, 385
HinfI	GANTC	6 cut(s)	466, 550, 565, 901, 1080, 1192
HpaII	CCGG	2 cut(s)	1118, 1253
HphI	GGTGA	5 cut(s)	25, 224, 910, 918, 1201
Hpy188I	TCNGA	4 cut(s)	125, 664, 697, 1008
Hpy188III	TCNNGA	7 cut(s)	251, 374, 408, 463, 554, 800, 905
HpyAV	CCTTC	4 cut(s)	147, 270, 613, 1180
HpyCH4V	TGCA	8 cut(s)	590, 723, 794, 843, 953, 1027, 1107, 1238
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 112, 507, 764, 849, 1033
HpyF3I	CTNAG	5 cut(s)	95, 461, 486, 696, 825
Hsp92II	CATG	8 cut(s)	254, 749, 774, 883, 953, 1177, 1286, 1301
HspAI	GCGC	4 cut(s)	284, 598, 916, 1143
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	9 cut(s)	98, 120, 177, 229, 317, 370, 410, 622, 1008
LmnI	GCTCC	1 cut(s)	647
Lsp1109I	GCAGC	5 cut(s)	17, 218, 778, 1039, 1045
LweI	GCATC	3 cut(s)	655, 776, 1045
MaeI	CTAG	2 cut(s)	80, 554
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	9 cut(s)	100, 122, 179, 231, 319, 372, 412, 624, 1010
MboI	GATC	9 cut(s)	98, 120, 177, 229, 317, 370, 410, 622, 1008
MboII	GAAGA	7 cut(s)	184, 187, 208, 461, 617, 620, 971
MfeI	CAATTG	1 cut(s)	1031
MflI	RGATCY	3 cut(s)	317, 622, 1008
MlsI	TGGCCA	3 cut(s)	744, 1161, 1172
MluCI	AATT	8 cut(s)	427, 655, 718, 837, 1031, 1040, 1092, 1181
MluNI	TGGCCA	3 cut(s)	744, 1161, 1172
MlyI	GAGTC	2 cut(s)	460, 559
Mox20I	TGGCCA	3 cut(s)	744, 1161, 1172
Mph1103I	ATGCAT	1 cut(s)	955
MscI	TGGCCA	3 cut(s)	744, 1161, 1172
MseI	TTAA	3 cut(s)	314, 966, 1068
MslI	CAYNNNNRTG	1 cut(s)	772
Msp20I	TGGCCA	3 cut(s)	744, 1161, 1172
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	2 cut(s)	1118, 1253
MspR9I	CCNGG	3 cut(s)	152, 507, 1253
MunI	CAATTG	1 cut(s)	1031
Mva1269I	GAATGC	2 cut(s)	501, 852
MvaI	CCWGG	2 cut(s)	152, 507
MwoI	GCNNNNNNNGC	6 cut(s)	91, 112, 507, 764, 849, 1033
NciI	CCSGG	1 cut(s)	1253
NdeII	GATC	9 cut(s)	98, 120, 177, 229, 317, 370, 410, 622, 1008
NlaIII	CATG	8 cut(s)	254, 749, 774, 883, 953, 1177, 1286, 1301
NlaIV	GGNNCC	2 cut(s)	997, 1050
NmuCI	GTSAC	1 cut(s)	306
NsbI	TGCGCA	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	1 cut(s)	953
PaeR7I	CTCGAG	1 cut(s)	641
PagI	TCATGA	1 cut(s)	250
PctI	GAATGC	2 cut(s)	501, 852
PfeI	GAWTC	4 cut(s)	565, 901, 1080, 1192
PflMI	CCANNNNNTGG	1 cut(s)	1168
PkrI	GCNGC	5 cut(s)	7, 208, 793, 1029, 1060
PleI	GAGTC	2 cut(s)	460, 558
PpsI	GAGTC	2 cut(s)	460, 558
PpuMI	RGGWCCY	1 cut(s)	1049
Psp5II	RGGWCCY	1 cut(s)	1049
Psp6I	CCWGG	2 cut(s)	150, 505
PspGI	CCWGG	2 cut(s)	150, 505
PspN4I	GGNNCC	2 cut(s)	997, 1050
PspPI	GGNCC	3 cut(s)	128, 700, 1049
PspPPI	RGGWCCY	1 cut(s)	1049
PspXI	VCTCGAGB	1 cut(s)	641
PsuI	RGATCY	3 cut(s)	317, 622, 1008
RsaI	GTAC	1 cut(s)	923
RsaNI	GTAC	1 cut(s)	922
RseI	CAYNNNNRTG	1 cut(s)	772
SaqAI	TTAA	3 cut(s)	314, 966, 1068
SatI	GCNGC	5 cut(s)	6, 207, 792, 1028, 1059
Sau3AI	GATC	9 cut(s)	98, 120, 177, 229, 317, 370, 410, 622, 1008
Sau96I	GGNCC	3 cut(s)	128, 700, 1049
SchI	GAGTC	2 cut(s)	460, 559
ScrFI	CCNGG	3 cut(s)	152, 507, 1253
SfaNI	GCATC	3 cut(s)	655, 776, 1045
Sfr274I	CTCGAG	1 cut(s)	641
SinI	GGWCC	2 cut(s)	700, 1049
SlaI	CTCGAG	1 cut(s)	641
SmiMI	CAYNNNNRTG	1 cut(s)	772
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	8 cut(s)	427, 655, 718, 837, 1031, 1040, 1092, 1181
SsiI	CCGC	2 cut(s)	395, 756
SspMI	CTAG	2 cut(s)	80, 554
StyD4I	CCNGG	3 cut(s)	150, 505, 1251
StyI	CCWWGG	1 cut(s)	496
TaqI	TCGA	5 cut(s)	186, 642, 874, 1083, 1230
TasI	AATT	8 cut(s)	427, 655, 718, 837, 1031, 1040, 1092, 1181
TatI	WGTACW	1 cut(s)	921
TfiI	GAWTC	4 cut(s)	565, 901, 1080, 1192
Tru1I	TTAA	3 cut(s)	314, 966, 1068
Tru9I	TTAA	3 cut(s)	314, 966, 1068
TscAI	CASTG	4 cut(s)	15, 30, 293, 918
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	5 cut(s)	5, 206, 791, 1027, 1058
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	7 cut(s)	129, 185, 209, 672, 697, 896, 928
TspRI	CASTG	4 cut(s)	15, 30, 293, 918
Van91I	CCANNNNNTGG	1 cut(s)	1168
VpaK11BI	GGWCC	2 cut(s)	700, 1049
XapI	RAATTY	2 cut(s)	837, 1092
XbaI	TCTAGA	1 cut(s)	553
XceI	RCATGY	1 cut(s)	953
XhoI	CTCGAG	1 cut(s)	641
XspI	CTAG	2 cut(s)	80, 554
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.