Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003570

Physical Location & Seq

Genomic Coordinates Forward (+)

11492912 .. 11497080

Gene Structure 4169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCCGATGAGTTGTGGTTGCTTCCCCAGGAGATCCCGAAAGGCCGGTCACACCAAGTTAAATAGACTGCCCTCCCTGACCGATTCGATCAAAACATCATCTCCTAGGAAAAAGGATGCCCCAGAGAAGTCGACATTGGTCGTTTGCTTTGGAGAAATGTTGATTGATTTTGTCCCGATGACGGCCGGAGTTTCTCTTGCTGATGCAGAAGGTTTCAAGAAAGCTGCTGGTGGAGCTCCTGCTAATGTTGCAGTTGGAATATCAAGATTAGGGGGCTCAGCAGCTTTTATGGGCAAGGTTGGTGCAGATGAGTTTGGATACATGCTGTCAAATATTCTGAAGGAAAACATTGTGGACAATTCTGGCATGTGTTTTGACGAAAATGCAAGGACTGCATTGGCCTTTGTTACACTCAGAAGTGATGGAGAACGCGAATTTATGTTCTATCGCAACCCAAGTGCTGATATGCTTCTCACTAAGAATGAACTAAATGTGGACCTAATCAAGAAGGCAAGTATATTTCACTATGGTTCGATTAGTCTGATTGAGGAACCTTGTAGATCAGCTCATCTCGCCGCGATGGACATTGCTAAGCAGGCTGGTTGTATACTCTCTTACGACCCGAACTTGAGATTGCCACTCTGGCCTTCTGCAGAGGCTGCTCGGAAGGGCATTATGAGCATTTGGAACCTAGCTGACATTATTAAGGTAAGTGAGGAGGAAATTACATTTTTGACTGGAGGTGACGATCCTTATGATGATGAGCTGGTCATGAACAAGCTTTATCACTCCAATCTGAAGCTTCTGTTAGTGACCGAAGGGCCAGCTGGCTGCAGATACTACACAAAGGAGTTCAAGGGTAAGGTTGCAGGAATCAAAGCTGACTGTGTTGATACAACTGGTGCTGGTGACTCTTTTGTTGGCTCTGTACTCAACAGTTTGGCTTCAGACCCTGAGTTGTTCAAGAATGAAAAACAGCTGACTGAGGCCCTCAAATTTGCCAATGCTTGTGGTGCTCTCACTGTGGAAAAGAAAGGAGCCATTCCTGCACTACCCACAAAAGAAGCTGTCCCCAAAGTTCTTAGCCAAACCTCGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

367

Amino Acids

39.4

Weight (kDa)

6.47

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	45 - 353	1.4e-75	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51830 AT5G51830
fragaria_vesca	FvH4_7g12690 FvH4_7g28710 FvH4_7g28710
malus_domestica	MD00G1004100.v1.1 MD01G1193000.v1.1 MD02G1197500.v1.1 MD15G1307900.v1.1
prunus_persica	Prupe.2G151100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1
pyrus_communis	pycom01g20360 pycom02g16100 pycom07g23930
rosa_chinensis	RchiOBHm_Chr1g0351681 RchiOBHm_Chr1g0376211
rosa_laevigata	RLG00000026619 RLG00000028390
rosa_multiflora	Rmu_sc0000061.1_g000037 Rmu_sc0001144.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282300 Rroxscaffold_4G00303620
rosa_rugosa	Rorug01G0220600 Rorug01G0394400
rosa_samantha	Rh1AG406000 Rh1BG369700 Rh1CG382400 Rh1CG382600 Rh1DG232200 Rh1DG399300 Rh1DG399500
rosa_wichuraiana	Rw1G020430 Rw1G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	131, 607
AccII	CGCG	2 cut(s)	432, 578
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	2 cut(s)	27, 743
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	434, 995
AcuI	CTGAAG	3 cut(s)	359, 818, 930
AfaI	GTAC	1 cut(s)	930
AfiI	CCNNNNNNNGG	2 cut(s)	181, 1093
AgsI	TTSAA	3 cut(s)	217, 856, 964
AjnI	CCWGG	1 cut(s)	26
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
Alw21I	GWGCWC	2 cut(s)	238, 1018
AlwI	GGATC	2 cut(s)	27, 743
AlwNI	CAGNNNCTG	2 cut(s)	659, 953
AoxI	GGCC	6 cut(s)	42, 183, 399, 644, 821, 987
ApeKI	GCWGC	4 cut(s)	224, 281, 659, 831
ApoI	RAATTY	2 cut(s)	434, 995
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AspA2I	CCTAGG	1 cut(s)	104
AspS9I	GGNCC	3 cut(s)	496, 821, 988
AsuHPI	GGTGA	2 cut(s)	755, 920
AvaII	GGWCC	1 cut(s)	496
AvrII	CCTAGG	1 cut(s)	104
BanII	GRGCYC	2 cut(s)	238, 278
Bbv12I	GWGCWC	2 cut(s)	238, 1018
BbvI	GCAGC	4 cut(s)	211, 293, 646, 818
BccI	CCATC	2 cut(s)	416, 574
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	105, 692
BfmI	CTRYAG	2 cut(s)	651, 832
BfuI	GTATCC	1 cut(s)	311
BglI	GCCNNNNNGGC	1 cut(s)	643
BisI	GCNGC	5 cut(s)	225, 282, 576, 660, 832
BlnI	CCTAGG	1 cut(s)	104
BlpI	GCTNAGC	2 cut(s)	277, 591
BlsI	GCNGC	5 cut(s)	226, 283, 577, 661, 833
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	3 cut(s)	496, 821, 988
BmiI	GGNNCC	3 cut(s)	552, 689, 1039
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	2 cut(s)	106, 193
BoxI	GACNNNNGTC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	759
Bpu1102I	GCTNAGC	2 cut(s)	277, 591
BpuEI	CTTGAG	1 cut(s)	649
BsaJI	CCNNGG	3 cut(s)	26, 104, 1092
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 1093
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	742, 904
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	26, 104, 1092
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	181, 1093
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	4 cut(s)	291, 427, 945, 975
BseNI	ACTGG	2 cut(s)	742, 904
BseRI	GAGGAG	1 cut(s)	731
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	211, 293, 646, 818
BsgI	GTGCAG	2 cut(s)	324, 1032
Bsh1236I	CGCG	2 cut(s)	432, 578
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	6 cut(s)	44, 185, 401, 646, 823, 989
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	238, 1018
BsiSI	CCGG	2 cut(s)	45, 186
BslFI	GGGAC	2 cut(s)	158, 1055
BslI	CCNNNNNNNGG	2 cut(s)	181, 1093
BsmFI	GGGAC	2 cut(s)	158, 1055
BsnI	GGCC	6 cut(s)	44, 185, 401, 646, 823, 989
Bsp1286I	GDGCHC	3 cut(s)	238, 278, 1018
Bsp143I	GATC	4 cut(s)	32, 87, 560, 748
Bsp1720I	GCTNAGC	2 cut(s)	277, 591
BspACI	CCGC	1 cut(s)	576
BspANI	GGCC	6 cut(s)	44, 185, 401, 646, 823, 989
BspCNI	CTCAG	4 cut(s)	290, 426, 946, 976
BspFNI	CGCG	2 cut(s)	432, 578
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	3 cut(s)	552, 689, 1039
BspMAI	CTGCAG	2 cut(s)	655, 836
BspPI	GGATC	2 cut(s)	27, 743
BsrDI	GCAATG	1 cut(s)	585
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	742, 904
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	26, 104, 1092
BssMI	GATC	4 cut(s)	32, 87, 560, 748
BssNAI	GTATAC	1 cut(s)	608
BssT1I	CCWWGG	1 cut(s)	104
Bst1107I	GTATAC	1 cut(s)	608
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	3 cut(s)	887, 938, 1024
BstAPI	GCANNNNNTGC	2 cut(s)	392, 659
BstC8I	GCNNGC	3 cut(s)	597, 825, 829
BstDEI	CTNAG	7 cut(s)	277, 413, 477, 591, 954, 984, 1082
BstF5I	GGATG	1 cut(s)	121
BstFNI	CGCG	2 cut(s)	432, 578
BstKTI	GATC	4 cut(s)	35, 90, 563, 751
BstMBI	GATC	4 cut(s)	32, 87, 560, 748
BstMCI	CGRYCG	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	2 cut(s)	325, 370
BstPAI	GACNNNNGTC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	2 cut(s)	651, 832
BstUI	CGCG	2 cut(s)	432, 578
BstV1I	GCAGC	4 cut(s)	211, 293, 646, 818
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BstZ17I	GTATAC	1 cut(s)	608
BstZI	CGGCCG	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	311
BsuRI	GGCC	6 cut(s)	44, 185, 401, 646, 823, 989
BtgZI	GCGATG	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	1020
Cac8I	GCNNGC	3 cut(s)	597, 825, 829
CaiI	CAGNNNCTG	2 cut(s)	659, 953
CciI	TCATGA	1 cut(s)	771
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	3 cut(s)	496, 821, 988
Csp6I	GTAC	1 cut(s)	929
CspCI	CAANNNNNGTGG	2 cut(s)	991, 1026
CviAII	CATG	4 cut(s)	322, 367, 772, 1098
CviQI	GTAC	1 cut(s)	929
DdeI	CTNAG	7 cut(s)	277, 413, 477, 591, 954, 984, 1082
DpnI	GATC	4 cut(s)	34, 89, 562, 750
DpnII	GATC	4 cut(s)	32, 87, 560, 748
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Ecl136II	GAGCTC	1 cut(s)	236
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	2 cut(s)	238, 278
Eco47I	GGWCC	1 cut(s)	496
Eco52I	CGGCCG	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	236
Eco57I	CTGAAG	3 cut(s)	359, 818, 930
EcoICRI	GAGCTC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	988
EcoRII	CCWGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	2 cut(s)	238, 278
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	4 cut(s)	325, 370, 775, 1101
FaqI	GGGAC	2 cut(s)	158, 1055
FatI	CATG	4 cut(s)	321, 366, 771, 1097
FblI	GTMKAC	2 cut(s)	131, 607
Fnu4HI	GCNGC	5 cut(s)	225, 282, 576, 660, 832
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	2 cut(s)	238, 278
Fsp4HI	GCNGC	5 cut(s)	225, 282, 576, 660, 832
FspBI	CTAG	2 cut(s)	105, 692
GluI	GCNGC	5 cut(s)	225, 282, 576, 660, 832
GsuI	CTGGAG	1 cut(s)	759
HaeIII	GGCC	6 cut(s)	44, 185, 401, 646, 823, 989
HapII	CCGG	2 cut(s)	45, 186
Hin1II	CATG	4 cut(s)	325, 370, 775, 1101
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HindIII	AAGCTT	2 cut(s)	779, 800
HinfI	GANTC	3 cut(s)	83, 873, 911
HpaII	CCGG	2 cut(s)	45, 186
HphI	GGTGA	2 cut(s)	755, 920
Hpy166II	GTNNAC	4 cut(s)	132, 355, 496, 608
Hpy188I	TCNGA	6 cut(s)	339, 416, 543, 666, 798, 949
Hpy188III	TCNNGA	7 cut(s)	36, 175, 217, 264, 505, 772, 964
Hpy8I	GTNNAC	4 cut(s)	132, 355, 496, 608
HpyAV	CCTTC	6 cut(s)	203, 334, 502, 657, 661, 812
HpyCH4III	ACNGT	3 cut(s)	887, 938, 1024
HpyCH4V	TGCA	9 cut(s)	206, 251, 305, 386, 395, 653, 834, 869, 1049
HpyF3I	CTNAG	7 cut(s)	277, 413, 477, 591, 954, 984, 1082
Hsp92II	CATG	4 cut(s)	325, 370, 775, 1101
Kzo9I	GATC	4 cut(s)	32, 87, 560, 748
LmnI	GCTCC	3 cut(s)	233, 241, 1037
Lsp1109I	GCAGC	4 cut(s)	211, 293, 646, 818
LweI	GCATC	2 cut(s)	106, 193
MaeI	CTAG	2 cut(s)	105, 692
MaeIII	GTNAC	5 cut(s)	47, 406, 743, 811, 908
MalI	GATC	4 cut(s)	34, 89, 562, 750
MboI	GATC	4 cut(s)	32, 87, 560, 748
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	3 cut(s)	238, 278, 1018
MluCI	AATT	4 cut(s)	358, 434, 723, 995
MlyI	GAGTC	1 cut(s)	905
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	8 cut(s)	82, 541, 649, 709, 712, 734, 979, 1001
MseI	TTAA	2 cut(s)	59, 705
MspA1I	CMGCKG	2 cut(s)	827, 979
MspI	CCGG	2 cut(s)	45, 186
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	2 cut(s)	432, 578
NdeII	GATC	4 cut(s)	32, 87, 560, 748
NlaIII	CATG	4 cut(s)	325, 370, 775, 1101
NlaIV	GGNNCC	3 cut(s)	552, 689, 1039
NmeAIII	GCCGAG	1 cut(s)	1073
NmuCI	GTSAC	4 cut(s)	47, 743, 811, 908
NspI	RCATGY	2 cut(s)	325, 370
PagI	TCATGA	1 cut(s)	771
PfeI	GAWTC	2 cut(s)	83, 873
PkrI	GCNGC	5 cut(s)	226, 283, 577, 661, 833
PleI	GAGTC	1 cut(s)	905
PpsI	GAGTC	1 cut(s)	905
PshAI	GACNNNNGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	3 cut(s)	552, 689, 1039
PspPI	GGNCC	3 cut(s)	496, 821, 988
PstI	CTGCAG	2 cut(s)	655, 836
PstNI	CAGNNNCTG	2 cut(s)	659, 953
PsuI	RGATCY	1 cut(s)	32
PvuII	CAGCTG	2 cut(s)	827, 979
RsaI	GTAC	1 cut(s)	930
RsaNI	GTAC	1 cut(s)	929
SacI	GAGCTC	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	59, 705
SatI	GCNGC	5 cut(s)	225, 282, 576, 660, 832
Sau3AI	GATC	4 cut(s)	32, 87, 560, 748
Sau96I	GGNCC	3 cut(s)	496, 821, 988
SchI	GAGTC	1 cut(s)	905
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	3 cut(s)	238, 278, 1018
SfaNI	GCATC	2 cut(s)	106, 193
SfcI	CTRYAG	2 cut(s)	651, 832
SinI	GGWCC	1 cut(s)	496
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	4 cut(s)	358, 434, 723, 995
SsiI	CCGC	1 cut(s)	576
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	105, 692
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	3 cut(s)	887, 938, 1024
TaqI	TCGA	3 cut(s)	86, 131, 533
TaqII	GACCGA	2 cut(s)	95, 830
TasI	AATT	4 cut(s)	358, 434, 723, 995
TatI	WGTACW	1 cut(s)	928
TauI	GCSGC	1 cut(s)	578
TfiI	GAWTC	2 cut(s)	83, 873
Tru1I	TTAA	2 cut(s)	59, 705
Tru9I	TTAA	2 cut(s)	59, 705
TscAI	CASTG	1 cut(s)	1027
TseFI	GTSAC	4 cut(s)	47, 743, 811, 908
TseI	GCWGC	4 cut(s)	224, 281, 659, 831
Tsp45I	GTSAC	4 cut(s)	47, 743, 811, 908
TspDTI	ATGAA	3 cut(s)	498, 788, 984
TspRI	CASTG	1 cut(s)	1027
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	2 cut(s)	434, 995
XceI	RCATGY	2 cut(s)	325, 370
XmaJI	CCTAGG	1 cut(s)	104
XmiI	GTMKAC	2 cut(s)	131, 607
XspI	CTAG	2 cut(s)	105, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.