Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003570

Physical Location & Seq

Genomic Coordinates Forward (+)

21254503 .. 21257960

Gene Structure 3458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28710.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCTTCTACTCCCAACTCAGATCCAGAAATAAAAGATAACAAATCGATGGTTGTTTGCTTTGGGGAAATGCTGATTGACTTTGTGCCAACTGTCGCTGGAGTTTCACTTGCTGAAGCACCTGCTTTCAAAAAAGCTCCCGGTGGCGCTCCTGCTAATGTGGCTGTTGGTATCTCTAGACTCGGTGGTTCAGCAGCTTTTATAGGCAAGGTAGGTGACGATGAGTTTGGCAAGATGTTGGCTGATATTTTAAAACAAAATAATGTTAACACCTCTGGCGTGCGATTTGACCACAATGCAAGAACTGCATTGGCATTTGTAACACTCAGAGCTGATGGTGAGCGCGAATTCTTATTTTTCCGTAATCCAAGTGCTGATATGCTTTTACATGAGTCAGAACTTGAAATAAGTCTTCTTCAACAGGCAAAAATTTTCCATTATGGTTCAATTAGTTTGATTGAGGAACCATGCAGGTCAACCCATCAAGCTGCGATGAACATAGCCAAGAAGTCTGGTTGCATCCTTTCTTATGATCCCAATTTGCGATTGGCATTGTGGCCATCAGCAGAGTTTGCACGGACAGAAATAATGAGCATATGGGATCAAGCAGATATTATCAAGATAAGCGAGGAGGAAATAACTTTCCTGACTGGTGGTGATGATCCTTATGATGATAATGTGGTGTTAACAAAGCTTTTTCATCCTAATCTTAAACTTTTGATAGTAACCGAAGGATCAGAGGGTTGCAGATATTACACACAAAATTTCAGGGGCCGTGTTGCGGGGATCAAAGTAAAAGCCATTGATACAACTGGTGCTGGTGATGCATTTGTCGGTGGGATACTCAACAGCATAGCTTCTGATTCGAATCTTTTTCAGGATGAGGAAGGGTTACGAGAAGCTCTACTTTTCGCAAATGCCTGCGGCGCAATCACAGTAACAGAACGAGGAGCCATTCCTGCAATGCCGACAACAGAAGCCGTCCTCCAGTTTTTAGCTCAAAACGCTGATAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046835 GO:0050896 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

340

Amino Acids

36.61

Weight (kDa)

4.92

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	35 - 343	7.7e-79	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51830 AT5G51830
fragaria_vesca	FvH4_7g12690 FvH4_7g28710 FvH4_7g28710
malus_domestica	MD00G1004100.v1.1 MD01G1193000.v1.1 MD02G1197500.v1.1 MD15G1307900.v1.1
prunus_persica	Prupe.2G151100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1
pyrus_communis	pycom01g20360 pycom02g16100 pycom07g23930
rosa_chinensis	RchiOBHm_Chr1g0351681 RchiOBHm_Chr1g0376211
rosa_laevigata	RLG00000026619 RLG00000028390
rosa_multiflora	Rmu_sc0000061.1_g000037 Rmu_sc0001144.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282300 Rroxscaffold_4G00303620
rosa_rugosa	Rorug01G0220600 Rorug01G0394400
rosa_samantha	Rh1AG406000 Rh1BG369700 Rh1CG382400 Rh1CG382600 Rh1DG232200 Rh1DG399300 Rh1DG399500
rosa_wichuraiana	Rw1G020430 Rw1G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	2 cut(s)	130, 462
AccII	CGCG	1 cut(s)	345
AciI	CCGC	2 cut(s)	782, 924
AclWI	GGATC	6 cut(s)	17, 527, 609, 656, 742, 794
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	3 cut(s)	347, 429, 763
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	781
AgsI	TTSAA	4 cut(s)	130, 404, 419, 447
AluBI	AGCT	8 cut(s)	137, 197, 332, 488, 694, 857, 902, 998
AluI	AGCT	8 cut(s)	137, 197, 332, 488, 694, 857, 902, 998
AlwI	GGATC	6 cut(s)	17, 527, 609, 656, 742, 794
AoxI	GGCC	2 cut(s)	557, 772
ApeKI	GCWGC	2 cut(s)	194, 488
ApoI	RAATTY	3 cut(s)	347, 429, 763
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	3 cut(s)	149, 345, 929
AspS9I	GGNCC	1 cut(s)	772
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	4 cut(s)	227, 350, 668, 833
AsuII	TTCGAA	1 cut(s)	866
BalI	TGGCCA	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	206, 475
BccI	CCATC	4 cut(s)	43, 329, 489, 568
BceAI	ACGGC	2 cut(s)	759, 965
BciVI	GTATCC	1 cut(s)	834
BcnI	CCSGG	1 cut(s)	141
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	2 cut(s)	130, 462
BfuI	GTATCC	1 cut(s)	834
BisI	GCNGC	3 cut(s)	195, 489, 925
BlsI	GCNGC	3 cut(s)	196, 490, 926
Bme1390I	CCNGG	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	3 cut(s)	465, 773, 952
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	528, 814
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	2 cut(s)	120, 971
Bpu14I	TTCGAA	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	867
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse1I	ACTGG	3 cut(s)	655, 817, 988
Bse3DI	GCAATG	1 cut(s)	969
Bse8I	GATNNNNATC	1 cut(s)	867
BseCI	ATCGAT	1 cut(s)	47
BseGI	GGATG	3 cut(s)	519, 700, 886
BseJI	GATNNNNATC	1 cut(s)	867
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	2 cut(s)	33, 340
BseNI	ACTGG	3 cut(s)	655, 817, 988
BseRI	GAGGAG	2 cut(s)	644, 963
BseXI	GCAGC	2 cut(s)	206, 475
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	559, 774
BshVI	ATCGAT	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	781
BsnI	GGCC	2 cut(s)	559, 774
Bsp119I	TTCGAA	1 cut(s)	866
Bsp143I	GATC	6 cut(s)	22, 532, 601, 661, 734, 786
BspACI	CCGC	2 cut(s)	782, 924
BspANI	GGCC	2 cut(s)	559, 774
BspCNI	CTCAG	2 cut(s)	32, 339
BspDI	ATCGAT	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	465, 773, 952
BspMI	ACCTGC	2 cut(s)	130, 462
BspPI	GGATC	6 cut(s)	17, 527, 609, 656, 742, 794
BspT104I	TTCGAA	1 cut(s)	866
BsrDI	GCAATG	1 cut(s)	969
BsrI	ACTGG	3 cut(s)	655, 817, 988
BssMI	GATC	6 cut(s)	22, 532, 601, 661, 734, 786
Bst4CI	ACNGT	2 cut(s)	94, 937
BstAPI	GCANNNNNTGC	2 cut(s)	305, 572
BstBI	TTCGAA	1 cut(s)	866
BstC8I	GCNNGC	2 cut(s)	281, 922
BstDEI	CTNAG	2 cut(s)	19, 326
BstF5I	GGATG	3 cut(s)	519, 700, 886
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	3 cut(s)	149, 345, 929
BstKTI	GATC	6 cut(s)	25, 535, 604, 664, 737, 789
BstMBI	GATC	6 cut(s)	22, 532, 601, 661, 734, 786
BstMWI	GCNNNNNNNGC	7 cut(s)	161, 305, 572, 824, 926, 959, 1004
BstSCI	CCNGG	1 cut(s)	139
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	206, 475
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	834
BsuRI	GGCC	2 cut(s)	559, 774
BsuTUI	ATCGAT	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	506
BtsCI	GGATG	3 cut(s)	519, 700, 886
BveI	ACCTGC	2 cut(s)	130, 462
Cac8I	GCNNGC	2 cut(s)	281, 922
CfoI	GCGC	3 cut(s)	149, 345, 929
Cfr13I	GGNCC	1 cut(s)	772
ClaI	ATCGAT	1 cut(s)	47
CviAII	CATG	2 cut(s)	389, 468
DdeI	CTNAG	2 cut(s)	19, 326
DpnI	GATC	6 cut(s)	24, 534, 603, 663, 736, 788
DpnII	GATC	6 cut(s)	22, 532, 601, 661, 734, 786
DraI	TTTAAA	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	829
FaeI	CATG	2 cut(s)	392, 471
FalI	AAGNNNNNCTT	2 cut(s)	891, 923
FatI	CATG	2 cut(s)	388, 467
FauI	CCCGC	1 cut(s)	775
FauNDI	CATATG	1 cut(s)	596
Fnu4HI	GCNGC	3 cut(s)	195, 489, 925
FokI	GGATG	3 cut(s)	506, 687, 893
Fsp4HI	GCNGC	3 cut(s)	195, 489, 925
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	3 cut(s)	148, 344, 928
GluI	GCNGC	3 cut(s)	195, 489, 925
GsuI	CTGGAG	2 cut(s)	120, 971
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	559, 774
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	3 cut(s)	149, 345, 929
Hin1II	CATG	2 cut(s)	392, 471
Hin6I	GCGC	3 cut(s)	147, 343, 927
HinP1I	GCGC	3 cut(s)	147, 343, 927
HincII	GTYRAC	3 cut(s)	268, 477, 687
HindII	GTYRAC	3 cut(s)	268, 477, 687
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	4 cut(s)	180, 392, 863, 868
HpaI	GTTAAC	2 cut(s)	268, 687
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	4 cut(s)	227, 350, 668, 833
Hpy166II	GTNNAC	3 cut(s)	268, 477, 687
Hpy188I	TCNGA	5 cut(s)	22, 329, 397, 739, 862
Hpy188III	TCNNGA	5 cut(s)	26, 177, 619, 646, 878
Hpy8I	GTNNAC	3 cut(s)	268, 477, 687
HpyAV	CCTTC	2 cut(s)	725, 881
HpyCH4III	ACNGT	2 cut(s)	94, 937
HpyCH4V	TGCA	8 cut(s)	299, 308, 471, 519, 575, 747, 827, 962
HpyF10VI	GCNNNNNNNGC	7 cut(s)	161, 305, 572, 824, 926, 959, 1004
HpyF3I	CTNAG	2 cut(s)	19, 326
Hsp92II	CATG	2 cut(s)	392, 471
HspAI	GCGC	3 cut(s)	147, 343, 927
KspAI	GTTAAC	2 cut(s)	268, 687
Kzo9I	GATC	6 cut(s)	22, 532, 601, 661, 734, 786
LmnI	GCTCC	3 cut(s)	142, 154, 950
Lsp1109I	GCAGC	2 cut(s)	206, 475
LweI	GCATC	2 cut(s)	528, 814
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	5 cut(s)	215, 319, 724, 891, 937
MalI	GATC	6 cut(s)	24, 534, 603, 663, 736, 788
MboI	GATC	6 cut(s)	22, 532, 601, 661, 734, 786
MboII	GAAGA	2 cut(s)	404, 407
MflI	RGATCY	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	5 cut(s)	347, 429, 447, 538, 763
MluNI	TGGCCA	1 cut(s)	559
MlyI	GAGTC	2 cut(s)	174, 401
MnlI	CCTC	8 cut(s)	283, 454, 622, 625, 733, 877, 941, 995
Mox20I	TGGCCA	1 cut(s)	559
Mph1103I	ATGCAT	1 cut(s)	829
MscI	TGGCCA	1 cut(s)	559
MseI	TTAA	4 cut(s)	251, 267, 686, 711
Msp20I	TGGCCA	1 cut(s)	559
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	7 cut(s)	161, 305, 572, 824, 926, 959, 1004
NciI	CCSGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	596
NdeII	GATC	6 cut(s)	22, 532, 601, 661, 734, 786
NlaIII	CATG	2 cut(s)	392, 471
NlaIV	GGNNCC	3 cut(s)	465, 773, 952
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	829
NspV	TTCGAA	1 cut(s)	866
PaqCI	CACCTGC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	863, 868
PkrI	GCNGC	3 cut(s)	196, 490, 926
PleI	GAGTC	2 cut(s)	174, 400
PpsI	GAGTC	2 cut(s)	174, 400
PspN4I	GGNNCC	3 cut(s)	465, 773, 952
PspPI	GGNCC	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	22
SaqAI	TTAA	4 cut(s)	251, 267, 686, 711
SatI	GCNGC	3 cut(s)	195, 489, 925
Sau3AI	GATC	6 cut(s)	22, 532, 601, 661, 734, 786
Sau96I	GGNCC	1 cut(s)	772
SchI	GAGTC	2 cut(s)	174, 401
ScrFI	CCNGG	1 cut(s)	141
SfaNI	GCATC	2 cut(s)	528, 814
SfuI	TTCGAA	1 cut(s)	866
Sse9I	AATT	5 cut(s)	347, 429, 447, 538, 763
SsiI	CCGC	2 cut(s)	782, 924
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	94, 937
TaqI	TCGA	2 cut(s)	47, 866
TasI	AATT	5 cut(s)	347, 429, 447, 538, 763
TauI	GCSGC	1 cut(s)	927
TfiI	GAWTC	2 cut(s)	863, 868
Tru1I	TTAA	4 cut(s)	251, 267, 686, 711
Tru9I	TTAA	4 cut(s)	251, 267, 686, 711
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	194, 488
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	509, 689
TspGWI	ACGGA	2 cut(s)	350, 592
XapI	RAATTY	3 cut(s)	347, 429, 763
XbaI	TCTAGA	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.