Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003570

Physical Location & Seq

Genomic Coordinates Forward (+)

50008730 .. 50038208

Gene Structure 29479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG369700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTGGCTAATATTCTAAAAGAAAACAATGTTGACACCTCTGTCGTGCGATTTGACCACAATGCAAGAACTGCATTGGCATTTGTAACACTCAGAGCTGATGGTGAGCGCGAATTCTTATTTTTCCGTAATCCAAGTGCTGATATGCTTTTACATGAATCAGAACTTGAGATAAGTCTTCTTCAACAGGCAAAAATTTTCCATTATGGTTCAATTAGTTTGATTGAGGAACCATGCAGGTCAACCCATCTAGCTGCGATGAGCATAGCCAAGAAGTCTGGTTGCATCCTTTCTTATGATCCAAATTTGCGATTGGCATTGTGGCCATCAGCAGAGTTTGCACGGGAAGAAATAATGAGCATATGGGATCAAGCAGATATTATCAAGATAAGTGAGGAGGAAATAACTTTCCTGACTGGTGGTGATGATCCTAATGATGATAACGTGGTGTTAACAAAGCTTTTTCATCCTAATCTTAAGCTTTTGATAGTAACTGAAGGATCAGAGGGTTGCAGATATTACACTCAAAATTTCAGGGGTCGTGTTGCTGGTATTAAAGTAAAAGCCGTTGATACAACTGGTGCTGGTGATGCATTTGTCGGTGGGATACTCTACAACATAGCTTCTGACTCGAGTCTTTTTCAGGATGAGAAGGGGTTACGAGAAGCTCTACTTTTCGCGAATGCCTGTGGCGCAATCACAGTAACAGAACGAGGAGCCATTCCTGCAATGCCGACAAAAGAAGCTGTCCTCCGGTTTTTAGCTCAGGTCACTGATCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046835 GO:0050896 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

261

Amino Acids

28.86

Weight (kDa)

5.05

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	1 - 246	1.7e-55	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51830 AT5G51830
fragaria_vesca	FvH4_7g12690 FvH4_7g28710 FvH4_7g28710
malus_domestica	MD00G1004100.v1.1 MD01G1193000.v1.1 MD02G1197500.v1.1 MD15G1307900.v1.1
prunus_persica	Prupe.2G151100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1
pyrus_communis	pycom01g20360 pycom02g16100 pycom07g23930
rosa_chinensis	RchiOBHm_Chr1g0351681 RchiOBHm_Chr1g0376211
rosa_laevigata	RLG00000026619 RLG00000028390
rosa_multiflora	Rmu_sc0000061.1_g000037 Rmu_sc0001144.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282300 Rroxscaffold_4G00303620
rosa_rugosa	Rorug01G0220600 Rorug01G0394400
rosa_samantha	Rh1AG406000 Rh1BG369700 Rh1CG382400 Rh1CG382600 Rh1DG232200 Rh1DG399300 Rh1DG399500
rosa_wichuraiana	Rw1G020430 Rw1G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	228
AccII	CGCG	2 cut(s)	111, 680
AclWI	GGATC	4 cut(s)	293, 375, 422, 508
AcoI	YGGCCR	1 cut(s)	323
AcsI	RAATTY	4 cut(s)	113, 195, 304, 529
AcuI	CTGAAG	1 cut(s)	516
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	185, 213
AluBI	AGCT	8 cut(s)	98, 254, 460, 481, 623, 668, 746, 764
AluI	AGCT	8 cut(s)	98, 254, 460, 481, 623, 668, 746, 764
AlwI	GGATC	4 cut(s)	293, 375, 422, 508
Ama87I	CYCGRG	1 cut(s)	631
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	4 cut(s)	113, 195, 304, 529
AspLEI	GCGC	2 cut(s)	111, 695
AsuHPI	GGTGA	3 cut(s)	116, 434, 599
AvaI	CYCGRG	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	3 cut(s)	95, 255, 334
BceAI	ACGGC	1 cut(s)	551
BciVI	GTATCC	1 cut(s)	600
BclI	TGATCA	1 cut(s)	775
BfaI	CTAG	1 cut(s)	251
BfrI	CTTAAG	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	600
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	631
BmiI	GGNNCC	2 cut(s)	231, 718
BmsI	GCATC	2 cut(s)	294, 580
BoxI	GACNNNNGTC	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	753
Bse1I	ACTGG	2 cut(s)	421, 583
Bse3DI	GCAATG	1 cut(s)	735
BseGI	GGATG	3 cut(s)	285, 466, 652
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	106, 779
BseNI	ACTGG	2 cut(s)	421, 583
BseRI	GAGGAG	2 cut(s)	410, 729
BseXI	GCAGC	1 cut(s)	241
Bsh1236I	CGCG	2 cut(s)	111, 680
BshFI	GGCC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	754
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	1 cut(s)	325
BsoBI	CYCGRG	1 cut(s)	631
Bsp143I	GATC	5 cut(s)	298, 367, 427, 500, 775
Bsp68I	TCGCGA	1 cut(s)	680
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	105, 778
BspFNI	CGCG	2 cut(s)	111, 680
BspLI	GGNNCC	2 cut(s)	231, 718
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	4 cut(s)	293, 375, 422, 508
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	2 cut(s)	421, 583
BssMI	GATC	5 cut(s)	298, 367, 427, 500, 775
Bst4CI	ACNGT	1 cut(s)	703
BstAFI	CTTAAG	1 cut(s)	476
BstAPI	GCANNNNNTGC	2 cut(s)	71, 338
BstDEI	CTNAG	2 cut(s)	92, 765
BstF5I	GGATG	3 cut(s)	285, 466, 652
BstFNI	CGCG	2 cut(s)	111, 680
BstHHI	GCGC	2 cut(s)	111, 695
BstKTI	GATC	5 cut(s)	301, 370, 430, 503, 778
BstMBI	GATC	5 cut(s)	298, 367, 427, 500, 775
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 338, 590, 692, 725
BstPAI	GACNNNNGTC	1 cut(s)	633
BstUI	CGCG	2 cut(s)	111, 680
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	3 cut(s)	285, 466, 652
BtsIMutI	CAGTG	1 cut(s)	771
BtuMI	TCGCGA	1 cut(s)	680
BveI	ACCTGC	1 cut(s)	228
CfoI	GCGC	2 cut(s)	111, 695
CviAII	CATG	2 cut(s)	155, 234
DdeI	CTNAG	2 cut(s)	92, 765
DpnI	GATC	5 cut(s)	300, 369, 429, 502, 777
DpnII	GATC	5 cut(s)	298, 367, 427, 500, 775
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	631
EcoRI	GAATTC	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	595
FaeI	CATG	2 cut(s)	158, 237
FaiI	YATR	9 cut(s)	146, 156, 207, 235, 266, 297, 362, 364, 620
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FatI	CATG	2 cut(s)	154, 233
FauNDI	CATATG	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	3 cut(s)	272, 453, 659
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	110, 694
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	1 cut(s)	754
HhaI	GCGC	2 cut(s)	111, 695
Hin1II	CATG	2 cut(s)	158, 237
Hin6I	GCGC	2 cut(s)	109, 693
HinP1I	GCGC	2 cut(s)	109, 693
HincII	GTYRAC	3 cut(s)	34, 243, 453
HindII	GTYRAC	3 cut(s)	34, 243, 453
HindIII	AAGCTT	2 cut(s)	458, 479
HinfI	GANTC	3 cut(s)	158, 629, 634
HpaI	GTTAAC	1 cut(s)	453
HpaII	CCGG	1 cut(s)	754
HphI	GGTGA	3 cut(s)	116, 434, 599
Hpy166II	GTNNAC	3 cut(s)	34, 243, 453
Hpy188I	TCNGA	4 cut(s)	95, 163, 505, 628
Hpy188III	TCNNGA	4 cut(s)	385, 412, 644, 679
Hpy8I	GTNNAC	3 cut(s)	34, 243, 453
HpyAV	CCTTC	2 cut(s)	491, 646
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	8 cut(s)	65, 74, 237, 285, 341, 513, 593, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 338, 590, 692, 725
HpyF3I	CTNAG	2 cut(s)	92, 765
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	2 cut(s)	158, 237
HspAI	GCGC	2 cut(s)	109, 693
Ksp22I	TGATCA	1 cut(s)	775
KspAI	GTTAAC	1 cut(s)	453
Kzo9I	GATC	5 cut(s)	298, 367, 427, 500, 775
LmnI	GCTCC	1 cut(s)	716
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	294, 580
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	5 cut(s)	85, 490, 657, 703, 769
MalI	GATC	5 cut(s)	300, 369, 429, 502, 777
MboI	GATC	5 cut(s)	298, 367, 427, 500, 775
MboII	GAAGA	3 cut(s)	170, 173, 359
MlsI	TGGCCA	1 cut(s)	325
MluCI	AATT	5 cut(s)	113, 195, 213, 304, 529
MluNI	TGGCCA	1 cut(s)	325
MlyI	GAGTC	2 cut(s)	623, 643
MnlI	CCTC	7 cut(s)	49, 220, 388, 391, 499, 707, 761
Mox20I	TGGCCA	1 cut(s)	325
Mph1103I	ATGCAT	1 cut(s)	595
MscI	TGGCCA	1 cut(s)	325
MseI	TTAA	3 cut(s)	452, 477, 555
Msp20I	TGGCCA	1 cut(s)	325
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	1 cut(s)	754
Mva1269I	GAATGC	1 cut(s)	688
MvnI	CGCG	2 cut(s)	111, 680
MwoI	GCNNNNNNNGC	5 cut(s)	71, 338, 590, 692, 725
NdeI	CATATG	1 cut(s)	362
NdeII	GATC	5 cut(s)	298, 367, 427, 500, 775
NlaIII	CATG	2 cut(s)	158, 237
NlaIV	GGNNCC	2 cut(s)	231, 718
NmuCI	GTSAC	1 cut(s)	769
NruI	TCGCGA	1 cut(s)	680
NsiI	ATGCAT	1 cut(s)	595
PaeR7I	CTCGAG	1 cut(s)	631
PctI	GAATGC	1 cut(s)	688
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	2 cut(s)	623, 642
PpsI	GAGTC	2 cut(s)	623, 642
PshAI	GACNNNNGTC	1 cut(s)	633
PspN4I	GGNNCC	2 cut(s)	231, 718
PspXI	VCTCGAGB	1 cut(s)	631
RruI	TCGCGA	1 cut(s)	680
SaqAI	TTAA	3 cut(s)	452, 477, 555
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	5 cut(s)	298, 367, 427, 500, 775
SchI	GAGTC	2 cut(s)	623, 643
SfaNI	GCATC	2 cut(s)	294, 580
Sfr274I	CTCGAG	1 cut(s)	631
SlaI	CTCGAG	1 cut(s)	631
SmlI	CTYRAG	3 cut(s)	167, 476, 631
SmoI	CTYRAG	3 cut(s)	167, 476, 631
Sse9I	AATT	5 cut(s)	113, 195, 213, 304, 529
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	703
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	632
TasI	AATT	5 cut(s)	113, 195, 213, 304, 529
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	3 cut(s)	452, 477, 555
Tru9I	TTAA	3 cut(s)	452, 477, 555
TscAI	CASTG	1 cut(s)	778
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	2 cut(s)	171, 455
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	778
Vha464I	CTTAAG	1 cut(s)	476
XapI	RAATTY	4 cut(s)	113, 195, 304, 529
XhoI	CTCGAG	1 cut(s)	631
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.