Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003570

Physical Location & Seq

Genomic Coordinates Forward (+)

20597751 .. 20600680

Gene Structure 2930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G151100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCCCCAACAGGTTGCAGCTGCTTCCCAGTGACACTCGAGCGATCCAAAAAGGGTAGCTTCAAGTTTGTTAGGAGTTCCTCCTCTGTTGCTGGTTCATCTAAATCATTTTCTTTTAAGAAAAGGAGCACCCAAGAGAAAAAAGCACTGATTGTTTGCTTTGGGGAGATGTTGATCGATTTCGTCCCAATTACTGCTGGAGTTTCTCTTGCAGATGCAGAAGGTTTCAAAAAAGCTGCTGGTGGAGCTCCTGCTAATGTTGCAGTTGGAATATCAAGATTAGGAGGCTCAGCAGCTTTTATGGGCAAGGTTGGTAAAGATGAATTTGGATACATGTTGGCTGATATTCTGAAAGAAAACAATGTGGACTATTCCGGCATGCGTTTTGACCCAAATGCAAGGACTGCATTGGCATTTGTTACACTCAGAAGTGACGGGGAACGTGAATTCATGTTCTACCGCAACCCAAGTGCTGATAAGCTTCTTCATGAGAAAGAACTTGACGTGAATCTCATAAAAAAGGCTGACATTTTTCACTATGGATCGATTAGTTTGATAGAGGAACCATGCAGATCAGCTCATCTTGCTGCAATGGACATTGCCAAAAAGGCTGGTTGTATCCTCTCTTATGATCCAAACCTGAGATTGCCACTGTGGCCATCTGCAGAGGCTGCTCAGCAAGGCATTATGAGCATATGGAACCAAGCTGACATTATTAAGATAAGTGAGGAAGAAATTGAGTTCTTGACTGGAGGTGATGATCCTTATGATGATGATGTGGTCATGAAAAAACTTTATCACCCCAATCTGAAGCTTCTGATAGTAACTGAAGGGGCAGCAGGCTGCAGATACTATACAAAGGAATTTAAGGGTAAGGTTGAAGGCATCAAAGCTGATGCTGTTGACACTACTGGTGCCGGTGATTCGTTTGTCGGTGCCATACTCAACAGCTGGGGTTCAGACCTAAATCTGTACAAGGATGAAAAAAGGTTGAGAGAAGCTCTCTTGTTTGCCAATGCATGTGGTGCTCTCACGGTGCAAAAGAAAGGAGCTATACCAGCAATGCCCACAAAAGAAGCTGTCGACCAATTTCTTCACCAAACCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

371

Amino Acids

40.21

Weight (kDa)

6.56

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51830 AT5G51830
fragaria_vesca	FvH4_7g12690 FvH4_7g28710 FvH4_7g28710
malus_domestica	MD00G1004100.v1.1 MD01G1193000.v1.1 MD02G1197500.v1.1 MD15G1307900.v1.1
prunus_persica	Prupe.2G151100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1
pyrus_communis	pycom01g20360 pycom02g16100 pycom07g23930
rosa_chinensis	RchiOBHm_Chr1g0351681 RchiOBHm_Chr1g0376211
rosa_laevigata	RLG00000026619 RLG00000028390
rosa_multiflora	Rmu_sc0000061.1_g000037 Rmu_sc0001144.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282300 Rroxscaffold_4G00303620
rosa_rugosa	Rorug01G0220600 Rorug01G0394400
rosa_samantha	Rh1AG406000 Rh1BG369700 Rh1CG382400 Rh1CG382600 Rh1DG232200 Rh1DG399300 Rh1DG399500
rosa_wichuraiana	Rw1G020430 Rw1G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	914, 935
AccI	GTMKAC	1 cut(s)	1083
AciI	CCGC	1 cut(s)	460
AclWI	GGATC	4 cut(s)	39, 550, 626, 755
AcoI	YGGCCR	1 cut(s)	656
AcsI	RAATTY	3 cut(s)	323, 446, 863
AcuI	CTGAAG	2 cut(s)	830, 849
AfaI	GTAC	1 cut(s)	974
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	64, 229, 881
AjiI	CACGTC	1 cut(s)	505
Alw21I	GWGCWC	3 cut(s)	131, 250, 1030
AlwI	GGATC	4 cut(s)	39, 550, 626, 755
AlwNI	CAGNNNCTG	1 cut(s)	671
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	3, 656
ApeKI	GCWGC	8 cut(s)	18, 21, 236, 293, 587, 671, 836, 843
ApoI	RAATTY	3 cut(s)	323, 446, 863
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	767, 791, 932, 1088
AvaI	CYCGRG	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	658
BanI	GGYRCC	2 cut(s)	914, 935
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	3 cut(s)	131, 250, 1030
BbvI	GCAGC	8 cut(s)	8, 30, 223, 305, 574, 658, 830, 848
BccI	CCATC	1 cut(s)	667
BciVI	GTATCC	2 cut(s)	323, 629
BfmI	CTRYAG	2 cut(s)	663, 844
BfuI	GTATCC	2 cut(s)	323, 629
BglI	GCCNNNNNGGC	2 cut(s)	608, 655
BisI	GCNGC	8 cut(s)	19, 22, 237, 294, 588, 672, 837, 844
BlpI	GCTNAGC	2 cut(s)	289, 675
BlsI	GCNGC	8 cut(s)	20, 23, 238, 295, 589, 673, 838, 845
BmeT110I	CYCGRG	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	5 cut(s)	6, 564, 701, 916, 937
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	3 cut(s)	205, 886, 894
BmuI	ACTGGG	1 cut(s)	23
BplI	GAGNNNNNCTC	4 cut(s)	985, 1017, 987, 1019
BpmI	CTGGAG	2 cut(s)	219, 771
Bpu1102I	GCTNAGC	2 cut(s)	289, 675
Bsa29I	ATCGAT	2 cut(s)	177, 545
BsaBI	GATNNNNATC	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	3 cut(s)	29, 754, 916
Bse3DI	GCAATG	3 cut(s)	597, 597, 1068
Bse8I	GATNNNNATC	1 cut(s)	173
BseCI	ATCGAT	2 cut(s)	177, 545
BseGI	GGATG	1 cut(s)	985
BseJI	GATNNNNATC	1 cut(s)	173
BseMI	GCAATG	3 cut(s)	597, 597, 1068
BseMII	CTCAG	4 cut(s)	303, 439, 632, 689
BseNI	ACTGG	3 cut(s)	29, 754, 916
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	8 cut(s)	8, 30, 223, 305, 574, 658, 830, 848
BseYI	CCCAGC	1 cut(s)	951
BshFI	GGCC	2 cut(s)	5, 658
BshNI	GGYRCC	2 cut(s)	914, 935
BshVI	ATCGAT	2 cut(s)	177, 545
BsiHKAI	GWGCWC	3 cut(s)	131, 250, 1030
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	375, 918
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	5, 658
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	131, 250, 1030
Bsp1407I	TGTACA	1 cut(s)	972
Bsp143I	GATC	6 cut(s)	44, 174, 542, 572, 631, 760
Bsp1720I	GCTNAGC	2 cut(s)	289, 675
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	2 cut(s)	5, 658
BspCNI	CTCAG	4 cut(s)	302, 438, 633, 688
BspDI	ATCGAT	2 cut(s)	177, 545
BspHI	TCATGA	2 cut(s)	487, 783
BspLI	GGNNCC	5 cut(s)	6, 564, 701, 916, 937
BspMAI	CTGCAG	2 cut(s)	667, 848
BspPI	GGATC	4 cut(s)	39, 550, 626, 755
BspT107I	GGYRCC	2 cut(s)	914, 935
BsrDI	GCAATG	3 cut(s)	597, 597, 1068
BsrFI	RCCGGY	1 cut(s)	917
BsrGI	TGTACA	1 cut(s)	972
BsrI	ACTGG	3 cut(s)	29, 754, 916
BssAI	RCCGGY	1 cut(s)	917
BssMI	GATC	6 cut(s)	44, 174, 542, 572, 631, 760
Bst4CI	ACNGT	2 cut(s)	654, 1036
BstAPI	GCANNNNNTGC	3 cut(s)	404, 671, 1025
BstAUI	TGTACA	1 cut(s)	972
BstC8I	GCNNGC	2 cut(s)	380, 841
BstDEI	CTNAG	4 cut(s)	289, 425, 641, 675
BstF5I	GGATG	1 cut(s)	985
BstKTI	GATC	6 cut(s)	47, 177, 545, 575, 634, 763
BstMBI	GATC	6 cut(s)	44, 174, 542, 572, 631, 760
BstNSI	RCATGY	3 cut(s)	337, 382, 1023
BstSFI	CTRYAG	2 cut(s)	663, 844
BstV1I	GCAGC	8 cut(s)	8, 30, 223, 305, 574, 658, 830, 848
Bsu15I	ATCGAT	2 cut(s)	177, 545
BsuI	GTATCC	2 cut(s)	323, 629
BsuRI	GGCC	2 cut(s)	5, 658
BsuTUI	ATCGAT	2 cut(s)	177, 545
BtrI	CACGTC	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	985
BtsI	GCAGTG	1 cut(s)	1104
BtsIMutI	CAGTG	4 cut(s)	36, 146, 650, 1104
Cac8I	GCNNGC	2 cut(s)	380, 841
CaiI	CAGNNNCTG	1 cut(s)	671
CciI	TCATGA	2 cut(s)	487, 783
Cfr10I	RCCGGY	1 cut(s)	917
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	2 cut(s)	177, 545
Csp6I	GTAC	1 cut(s)	973
CspCI	CAANNNNNGTGG	2 cut(s)	1003, 1038
CviAII	CATG	7 cut(s)	334, 379, 451, 488, 567, 784, 1020
CviQI	GTAC	1 cut(s)	973
DdeI	CTNAG	4 cut(s)	289, 425, 641, 675
DpnI	GATC	6 cut(s)	46, 176, 544, 574, 633, 762
DpnII	GATC	6 cut(s)	44, 174, 542, 572, 631, 760
EaeI	YGGCCR	1 cut(s)	656
Ecl136II	GAGCTC	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	2 cut(s)	830, 849
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	446
EcoT22I	ATGCAT	1 cut(s)	1021
EcoT38I	GRGCYC	1 cut(s)	250
FaeI	CATG	7 cut(s)	337, 382, 454, 491, 570, 787, 1023
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	7 cut(s)	333, 378, 450, 487, 566, 783, 1019
FauNDI	CATATG	1 cut(s)	695
FblI	GTMKAC	1 cut(s)	1083
Fnu4HI	GCNGC	8 cut(s)	19, 22, 237, 294, 588, 672, 837, 844
FokI	GGATG	1 cut(s)	992
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	8 cut(s)	19, 22, 237, 294, 588, 672, 837, 844
GluI	GCNGC	8 cut(s)	19, 22, 237, 294, 588, 672, 837, 844
GsaI	CCCAGC	1 cut(s)	955
GsuI	CTGGAG	2 cut(s)	219, 771
HaeIII	GGCC	2 cut(s)	5, 658
HapII	CCGG	2 cut(s)	375, 918
Hin1II	CATG	7 cut(s)	337, 382, 454, 491, 570, 787, 1023
HincII	GTYRAC	2 cut(s)	904, 1084
HindII	GTYRAC	2 cut(s)	904, 1084
HindIII	AAGCTT	2 cut(s)	479, 812
HinfI	GANTC	2 cut(s)	508, 923
HpaII	CCGG	2 cut(s)	375, 918
HphI	GGTGA	4 cut(s)	767, 791, 932, 1088
Hpy166II	GTNNAC	3 cut(s)	367, 904, 1084
Hpy188I	TCNGA	5 cut(s)	351, 428, 810, 819, 961
Hpy188III	TCNNGA	4 cut(s)	276, 488, 745, 784
Hpy8I	GTNNAC	3 cut(s)	367, 904, 1084
HpyAV	CCTTC	3 cut(s)	215, 824, 875
HpyCH4III	ACNGT	2 cut(s)	654, 1036
HpyCH4IV	ACGT	2 cut(s)	442, 504
HpyF3I	CTNAG	4 cut(s)	289, 425, 641, 675
HpySE526I	ACGT	2 cut(s)	442, 504
Hsp92II	CATG	7 cut(s)	337, 382, 454, 491, 570, 787, 1023
Kzo9I	GATC	6 cut(s)	44, 174, 542, 572, 631, 760
LmnI	GCTCC	4 cut(s)	126, 245, 253, 1049
Lsp1109I	GCAGC	8 cut(s)	8, 30, 223, 305, 574, 658, 830, 848
LweI	GCATC	3 cut(s)	205, 886, 894
MaeII	ACGT	2 cut(s)	442, 504
MaeIII	GTNAC	4 cut(s)	31, 418, 431, 823
MalI	GATC	6 cut(s)	46, 176, 544, 574, 633, 762
MboI	GATC	6 cut(s)	44, 174, 542, 572, 631, 760
MboII	GAAGA	3 cut(s)	476, 743, 1085
MhlI	GDGCHC	3 cut(s)	131, 250, 1030
MlsI	TGGCCA	1 cut(s)	658
MluCI	AATT	6 cut(s)	189, 323, 446, 735, 863, 1088
MluNI	TGGCCA	1 cut(s)	658
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	8 cut(s)	91, 94, 278, 553, 632, 661, 721, 746
Mox20I	TGGCCA	1 cut(s)	658
Mph1103I	ATGCAT	1 cut(s)	1021
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	3 cut(s)	117, 717, 867
Msp20I	TGGCCA	1 cut(s)	658
MspA1I	CMGCKG	2 cut(s)	21, 951
MspI	CCGG	2 cut(s)	375, 918
NdeI	CATATG	1 cut(s)	695
NdeII	GATC	6 cut(s)	44, 174, 542, 572, 631, 760
NlaIII	CATG	7 cut(s)	337, 382, 454, 491, 570, 787, 1023
NlaIV	GGNNCC	5 cut(s)	6, 564, 701, 916, 937
NmuCI	GTSAC	2 cut(s)	31, 431
NsiI	ATGCAT	1 cut(s)	1021
NspI	RCATGY	3 cut(s)	337, 382, 1023
PaeI	GCATGC	1 cut(s)	382
PaeR7I	CTCGAG	1 cut(s)	38
PagI	TCATGA	2 cut(s)	487, 783
PciI	ACATGT	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	508, 923
PkrI	GCNGC	8 cut(s)	20, 23, 238, 295, 589, 673, 838, 845
PscI	ACATGT	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	951
PspN4I	GGNNCC	5 cut(s)	6, 564, 701, 916, 937
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	38
PstI	CTGCAG	2 cut(s)	667, 848
PstNI	CAGNNNCTG	1 cut(s)	671
PvuII	CAGCTG	2 cut(s)	21, 951
RsaI	GTAC	1 cut(s)	974
RsaNI	GTAC	1 cut(s)	973
SacI	GAGCTC	1 cut(s)	250
SalI	GTCGAC	1 cut(s)	1082
SaqAI	TTAA	3 cut(s)	117, 717, 867
SatI	GCNGC	8 cut(s)	19, 22, 237, 294, 588, 672, 837, 844
Sau3AI	GATC	6 cut(s)	44, 174, 542, 572, 631, 760
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	3 cut(s)	131, 250, 1030
SfaNI	GCATC	3 cut(s)	205, 886, 894
SfcI	CTRYAG	2 cut(s)	663, 844
Sfr274I	CTCGAG	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SphI	GCATGC	1 cut(s)	382
Sse9I	AATT	6 cut(s)	189, 323, 446, 735, 863, 1088
SsiI	CCGC	1 cut(s)	460
SstI	GAGCTC	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	654, 1036
TaiI	ACGT	2 cut(s)	445, 507
TaqI	TCGA	4 cut(s)	39, 177, 545, 1083
TasI	AATT	6 cut(s)	189, 323, 446, 735, 863, 1088
TatI	WGTACW	1 cut(s)	972
TfiI	GAWTC	2 cut(s)	508, 923
Tru1I	TTAA	3 cut(s)	117, 717, 867
Tru9I	TTAA	3 cut(s)	117, 717, 867
TscAI	CASTG	4 cut(s)	36, 153, 657, 1111
TseFI	GTSAC	2 cut(s)	31, 431
TseI	GCWGC	8 cut(s)	18, 21, 236, 293, 587, 671, 836, 843
Tsp45I	GTSAC	2 cut(s)	31, 431
TspDTI	ATGAA	6 cut(s)	87, 336, 439, 476, 800, 996
TspRI	CASTG	4 cut(s)	36, 153, 657, 1111
XapI	RAATTY	3 cut(s)	323, 446, 863
XceI	RCATGY	3 cut(s)	337, 382, 1023
XhoI	CTCGAG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	1083
Zsp2I	ATGCAT	1 cut(s)	1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.