Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000061.1

Orthogroup ID

OG0003570

Physical Location & Seq

Genomic Coordinates Forward (+)

165814 .. 169348

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000061.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atgagaattttggttagggctcagcgtctgaaacgctatttgaagcaagttgatgattgcaacatcacctggggcgccatcaccatgatggacgtcatccatggcattatggatagggactatgccagccctaggctggtggtggacggaggcggtgccttaggcagcagcgtcgattcaatcaaatcattatctcccaggaaaaaggatgccccagagaggagcacactggtcgtttgcttcggtgagatgttgattgattttgtcccaacgagtgctggagtttctcttgctgatgcagaaggtttcaagaaagctgctggtggagctcctgctaatgttgcagttggaatctcaagattaggaggctcggcagcttttatgggcaaggttggtgcagatgagtttggatacatgctgtctaatattctgaaggaaaacaatgtggacaattccggcatgtgttttgaccaacatgcaaggactgcattggcttttgttacactgagaagtgatggagaacgcgaattcatgttctatcgcaacccgagtgctgatatgcttctcactaaggaagaacttaacgtcgacctaatcaaaaaggcaaatatatttcactatgggtcgattagtctgattgaggaaccatgtaaatcagcacatctcgctgcgatggacgttgctaagaaggctggctgtatcctctcttatgacccgaacttgagattgccactgtggccttctgcagaggctgctcagaagggcattatgagcatttggaacctagctgacattattaaaataagtgaggaggaaattacatttttgactggaggtgatgatccttatgatgatgatgtggtcttgaacaagctttatcaccccaatctgaagcttctgttagtaactgaagggccagcaggctgcagatactacacaaaggaattcaagggtaaagttccaggaatcaaagcggactgtgtagatacaactggagctggtgactcttttgttggctctgtactcaacagcttggcttcagaccctgatttgttcaagaatgaacaacggttgaaggaggctctcaaatttgccaatgcttgtggtgctatcactgtggaaaagaaaggagccattcctgccctacccacaaaagaagctgtccataaagttcttagccaaacatcggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

397

Amino Acids

42.89

Weight (kDa)

5.95

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51830 AT5G51830
fragaria_vesca	FvH4_7g12690 FvH4_7g28710 FvH4_7g28710
malus_domestica	MD00G1004100.v1.1 MD01G1193000.v1.1 MD02G1197500.v1.1 MD15G1307900.v1.1
prunus_persica	Prupe.2G151100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1
pyrus_communis	pycom01g20360 pycom02g16100 pycom07g23930
rosa_chinensis	RchiOBHm_Chr1g0351681 RchiOBHm_Chr1g0376211
rosa_laevigata	RLG00000026619 RLG00000028390
rosa_multiflora	Rmu_sc0000061.1_g000037 Rmu_sc0001144.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282300 Rroxscaffold_4G00303620
rosa_rugosa	Rorug01G0220600 Rorug01G0394400
rosa_samantha	Rh1AG406000 Rh1BG369700 Rh1CG382400 Rh1CG382600 Rh1DG232200 Rh1DG399300 Rh1DG399500
rosa_wichuraiana	Rw1G020430 Rw1G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	2 cut(s)	74, 155
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	1 cut(s)	525
AciI	CCGC	2 cut(s)	153, 974
AclWI	GGATC	1 cut(s)	836
AcsI	RAATTY	4 cut(s)	6, 527, 944, 1088
AcuI	CTGAAG	4 cut(s)	452, 911, 930, 1023
AcyI	GRCGYC	2 cut(s)	75, 93
AfaI	GTAC	1 cut(s)	1023
AfiI	CCNNNNNNNGG	4 cut(s)	132, 136, 219, 1186
AgsI	TTSAA	7 cut(s)	43, 180, 310, 868, 949, 1057, 1075
AjnI	CCWGG	3 cut(s)	68, 197, 961
AluBI	AGCT	9 cut(s)	317, 329, 377, 788, 874, 895, 998, 1032, 1160
AluI	AGCT	9 cut(s)	317, 329, 377, 788, 874, 895, 998, 1032, 1160
Alw21I	GWGCWC	2 cut(s)	227, 331
AlwI	GGATC	1 cut(s)	836
AlwNI	CAGNNNCTG	3 cut(s)	28, 752, 1046
Ama87I	CYCGRG	1 cut(s)	547
AoxI	GGCC	2 cut(s)	737, 914
ApeKI	GCWGC	7 cut(s)	165, 168, 317, 374, 668, 752, 924
ApoI	RAATTY	4 cut(s)	6, 527, 944, 1088
AspA2I	CCTAGG	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	914
AsuHPI	GGTGA	6 cut(s)	58, 73, 257, 848, 872, 1013
AvaI	CYCGRG	1 cut(s)	547
AvrII	CCTAGG	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	160
BanI	GGYRCC	2 cut(s)	74, 155
BanII	GRGCYC	2 cut(s)	22, 331
Bbv12I	GWGCWC	2 cut(s)	227, 331
BbvI	GCAGC	7 cut(s)	177, 180, 304, 386, 655, 739, 911
BccI	CCATC	4 cut(s)	82, 86, 509, 667
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 214, 248
BciT130I	CCWGG	3 cut(s)	70, 199, 963
BciVI	GTATCC	2 cut(s)	404, 710
BfaI	CTAG	2 cut(s)	132, 785
BfmI	CTRYAG	2 cut(s)	744, 925
BfoI	RGCGCY	1 cut(s)	78
BfuI	GTATCC	2 cut(s)	404, 710
BglI	GCCNNNNNGGC	1 cut(s)	736
BisI	GCNGC	7 cut(s)	166, 169, 318, 375, 669, 753, 925
BlnI	CCTAGG	1 cut(s)	131
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	7 cut(s)	167, 170, 319, 376, 670, 754, 926
Bme1390I	CCNGG	3 cut(s)	70, 199, 963
BmeT110I	CYCGRG	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	914
BmiI	GGNNCC	5 cut(s)	76, 157, 645, 782, 1132
BmrFI	CCNGG	3 cut(s)	70, 199, 963
BmsI	GCATC	2 cut(s)	199, 286
BpmI	CTGGAG	3 cut(s)	300, 852, 1014
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	340, 742
BsaHI	GRCGYC	2 cut(s)	75, 93
BsaJI	CCNNGG	4 cut(s)	69, 100, 131, 197
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 136, 219, 1186
Bse1I	ACTGG	3 cut(s)	234, 835, 997
Bse21I	CCTNAGG	1 cut(s)	160
BseBI	CCWGG	3 cut(s)	70, 199, 963
BseDI	CCNNGG	4 cut(s)	69, 100, 131, 197
BseGI	GGATG	2 cut(s)	96, 214
BseLI	CCNNNNNNNGG	4 cut(s)	132, 136, 219, 1186
BseMII	CTCAG	3 cut(s)	35, 497, 770
BseNI	ACTGG	3 cut(s)	234, 835, 997
BseRI	GAGGAG	2 cut(s)	235, 824
BseXI	GCAGC	7 cut(s)	177, 180, 304, 386, 655, 739, 911
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	739, 916
BshNI	GGYRCC	2 cut(s)	74, 155
BsiHKAI	GWGCWC	2 cut(s)	227, 331
BsiHKCI	CYCGRG	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	2 cut(s)	131, 251
BslI	CCNNNNNNNGG	4 cut(s)	132, 136, 219, 1186
BsmFI	GGGAC	2 cut(s)	131, 251
BsnI	GGCC	2 cut(s)	739, 916
BsoBI	CYCGRG	1 cut(s)	547
Bsp1286I	GDGCHC	3 cut(s)	22, 227, 331
Bsp143I	GATC	1 cut(s)	841
Bsp1720I	GCTNAGC	1 cut(s)	21
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	2 cut(s)	153, 974
BspANI	GGCC	2 cut(s)	739, 916
BspCNI	CTCAG	3 cut(s)	34, 498, 769
BspFNI	CGCG	1 cut(s)	525
BspLI	GGNNCC	5 cut(s)	76, 157, 645, 782, 1132
BspMAI	CTGCAG	2 cut(s)	748, 929
BspPI	GGATC	1 cut(s)	836
BspT107I	GGYRCC	2 cut(s)	74, 155
BsrI	ACTGG	3 cut(s)	234, 835, 997
BssECI	CCNNGG	4 cut(s)	69, 100, 131, 197
BssMI	GATC	1 cut(s)	841
BssNI	GRCGYC	2 cut(s)	75, 93
BssT1I	CCWWGG	2 cut(s)	100, 131
Bst2UI	CCWGG	3 cut(s)	70, 199, 963
Bst4CI	ACNGT	4 cut(s)	735, 980, 1071, 1117
BstACI	GRCGYC	2 cut(s)	75, 93
BstAPI	GCANNNNNTGC	2 cut(s)	485, 752
BstC8I	GCNNGC	4 cut(s)	127, 694, 918, 922
BstDEI	CTNAG	7 cut(s)	21, 160, 506, 570, 684, 756, 1175
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	96, 214
BstFNI	CGCG	1 cut(s)	525
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	1 cut(s)	844
BstMBI	GATC	1 cut(s)	841
BstNI	CCWGG	3 cut(s)	70, 199, 963
BstNSI	RCATGY	3 cut(s)	418, 463, 479
BstSCI	CCNGG	3 cut(s)	68, 197, 961
BstSFI	CTRYAG	2 cut(s)	744, 925
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	7 cut(s)	177, 180, 304, 386, 655, 739, 911
Bsu36I	CCTNAGG	1 cut(s)	160
BsuI	GTATCC	2 cut(s)	404, 710
BsuRI	GGCC	2 cut(s)	739, 916
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	686
BtsCI	GGATG	2 cut(s)	96, 214
BtsIMutI	CAGTG	4 cut(s)	227, 503, 731, 1113
Cac8I	GCNNGC	4 cut(s)	127, 694, 918, 922
CaiI	CAGNNNCTG	3 cut(s)	28, 752, 1046
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	914
CseI	GACGC	2 cut(s)	14, 160
Csp6I	GTAC	1 cut(s)	1022
CspCI	CAANNNNNGTGG	2 cut(s)	1084, 1119
CviAII	CATG	8 cut(s)	85, 101, 415, 460, 476, 532, 648, 1191
CviQI	GTAC	1 cut(s)	1022
DdeI	CTNAG	7 cut(s)	21, 160, 506, 570, 684, 756, 1175
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	1 cut(s)	843
DpnII	GATC	1 cut(s)	841
Ecl136II	GAGCTC	1 cut(s)	329
Eco130I	CCWWGG	2 cut(s)	100, 131
Eco24I	GRGCYC	2 cut(s)	22, 331
Eco53kI	GAGCTC	1 cut(s)	329
Eco57I	CTGAAG	4 cut(s)	452, 911, 930, 1023
Eco81I	CCTNAGG	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	329
EcoRI	GAATTC	2 cut(s)	527, 944
EcoRII	CCWGG	3 cut(s)	68, 197, 961
EcoT14I	CCWWGG	2 cut(s)	100, 131
EcoT38I	GRGCYC	2 cut(s)	22, 331
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	2 cut(s)	100, 131
FaeI	CATG	8 cut(s)	88, 104, 418, 463, 479, 535, 651, 1194
FaqI	GGGAC	2 cut(s)	131, 251
FatI	CATG	8 cut(s)	84, 100, 414, 459, 475, 531, 647, 1190
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	7 cut(s)	166, 169, 318, 375, 669, 753, 925
FokI	GGATG	2 cut(s)	83, 221
FriOI	GRGCYC	2 cut(s)	22, 331
Fsp4HI	GCNGC	7 cut(s)	166, 169, 318, 375, 669, 753, 925
FspBI	CTAG	2 cut(s)	132, 785
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	7 cut(s)	166, 169, 318, 375, 669, 753, 925
GsuI	CTGGAG	3 cut(s)	300, 852, 1014
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	739, 916
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	2 cut(s)	14, 160
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	2 cut(s)	75, 93
Hin1II	CATG	8 cut(s)	88, 104, 418, 463, 479, 535, 651, 1194
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	2 cut(s)	872, 893
HinfI	GANTC	4 cut(s)	176, 351, 966, 1004
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	6 cut(s)	58, 73, 257, 848, 872, 1013
Hpy166II	GTNNAC	3 cut(s)	145, 448, 589
Hpy188I	TCNGA	6 cut(s)	30, 432, 636, 759, 891, 1042
Hpy188III	TCNNGA	4 cut(s)	310, 357, 865, 1057
Hpy8I	GTNNAC	3 cut(s)	145, 448, 589
Hpy99I	CGWCG	2 cut(s)	176, 590
HpyAV	CCTTC	7 cut(s)	296, 427, 682, 750, 754, 905, 1069
HpyCH4III	ACNGT	4 cut(s)	735, 980, 1071, 1117
HpyCH4IV	ACGT	3 cut(s)	93, 585, 678
HpyCH4V	TGCA	8 cut(s)	60, 299, 344, 398, 479, 488, 746, 927
HpyF3I	CTNAG	7 cut(s)	21, 160, 506, 570, 684, 756, 1175
HpySE526I	ACGT	3 cut(s)	93, 585, 678
Hsp92I	GRCGYC	2 cut(s)	75, 93
Hsp92II	CATG	8 cut(s)	88, 104, 418, 463, 479, 535, 651, 1194
HspAI	GCGC	1 cut(s)	75
KasI	GGCGCC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	841
LmnI	GCTCC	5 cut(s)	222, 326, 334, 995, 1130
Lsp1109I	GCAGC	7 cut(s)	177, 180, 304, 386, 655, 739, 911
LweI	GCATC	2 cut(s)	199, 286
MaeI	CTAG	2 cut(s)	132, 785
MaeII	ACGT	3 cut(s)	93, 585, 678
MaeIII	GTNAC	3 cut(s)	499, 904, 1001
MalI	GATC	1 cut(s)	843
MboI	GATC	1 cut(s)	841
MboII	GAAGA	1 cut(s)	587
MhlI	GDGCHC	3 cut(s)	22, 227, 331
MluCI	AATT	6 cut(s)	6, 451, 527, 816, 944, 1088
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	998
MmeI	TCCRAC	1 cut(s)	328
MseI	TTAA	2 cut(s)	582, 798
MslI	CAYNNNNRTG	3 cut(s)	83, 86, 1189
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	3 cut(s)	70, 199, 963
MvaI	CCWGG	3 cut(s)	70, 199, 963
MvnI	CGCG	1 cut(s)	525
NarI	GGCGCC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	841
NlaIII	CATG	8 cut(s)	88, 104, 418, 463, 479, 535, 651, 1194
NlaIV	GGNNCC	5 cut(s)	76, 157, 645, 782, 1132
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	1001
NspI	RCATGY	3 cut(s)	418, 463, 479
PfeI	GAWTC	3 cut(s)	176, 351, 966
PfoI	TCCNGGA	1 cut(s)	961
PkrI	GCNGC	7 cut(s)	167, 170, 319, 376, 670, 754, 926
PleI	GAGTC	1 cut(s)	998
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	998
Psp124BI	GAGCTC	1 cut(s)	331
Psp6I	CCWGG	3 cut(s)	68, 197, 961
PspGI	CCWGG	3 cut(s)	68, 197, 961
PspN4I	GGNNCC	5 cut(s)	76, 157, 645, 782, 1132
PspPI	GGNCC	1 cut(s)	914
PstI	CTGCAG	2 cut(s)	748, 929
PstNI	CAGNNNCTG	3 cut(s)	28, 752, 1046
RsaI	GTAC	1 cut(s)	1023
RsaNI	GTAC	1 cut(s)	1022
RseI	CAYNNNNRTG	3 cut(s)	83, 86, 1189
SacI	GAGCTC	1 cut(s)	331
SalI	GTCGAC	1 cut(s)	587
SaqAI	TTAA	2 cut(s)	582, 798
SatI	GCNGC	7 cut(s)	166, 169, 318, 375, 669, 753, 925
Sau3AI	GATC	1 cut(s)	841
Sau96I	GGNCC	1 cut(s)	914
SchI	GAGTC	1 cut(s)	998
ScrFI	CCNGG	3 cut(s)	70, 199, 963
SduI	GDGCHC	3 cut(s)	22, 227, 331
SfaNI	GCATC	2 cut(s)	199, 286
SfcI	CTRYAG	2 cut(s)	744, 925
SfoI	GGCGCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	3 cut(s)	83, 86, 1189
SmlI	CTYRAG	2 cut(s)	355, 721
SmoI	CTYRAG	2 cut(s)	355, 721
Sse9I	AATT	6 cut(s)	6, 451, 527, 816, 944, 1088
SsiI	CCGC	2 cut(s)	153, 974
SspDI	GGCGCC	1 cut(s)	74
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	2 cut(s)	132, 785
SstI	GAGCTC	1 cut(s)	331
StyD4I	CCNGG	3 cut(s)	68, 197, 961
StyI	CCWWGG	2 cut(s)	100, 131
TaaI	ACNGT	4 cut(s)	735, 980, 1071, 1117
TaiI	ACGT	3 cut(s)	96, 588, 681
TaqI	TCGA	3 cut(s)	174, 588, 626
TasI	AATT	6 cut(s)	6, 451, 527, 816, 944, 1088
TatI	WGTACW	1 cut(s)	1021
TfiI	GAWTC	3 cut(s)	176, 351, 966
Tru1I	TTAA	2 cut(s)	582, 798
Tru9I	TTAA	2 cut(s)	582, 798
TscAI	CASTG	4 cut(s)	234, 510, 738, 1120
TseFI	GTSAC	1 cut(s)	1001
TseI	GCWGC	7 cut(s)	165, 168, 317, 374, 668, 752, 924
Tsp45I	GTSAC	1 cut(s)	1001
TspDTI	ATGAA	2 cut(s)	520, 1077
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	4 cut(s)	234, 510, 738, 1120
XapI	RAATTY	4 cut(s)	6, 527, 944, 1088
XceI	RCATGY	3 cut(s)	418, 463, 479
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 133
XmaJI	CCTAGG	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	2 cut(s)	132, 785
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.