Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003570

Physical Location & Seq

Genomic Coordinates Forward (+)

63418183 .. 63421527

Gene Structure 3345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG406000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTACTACTCCAAACTCAGTTCTTGATGATCTCAAAAAATTGGATTTGGCTAAAGATTCAAAAAATCCTTCATCAGATGCAGGTTTAGAGAATAACAAATCGCTGGTTGTTTGCTTTGGGGAAATGCTGATTGACTTTGTGCCAACTGTTGCCGGAGTTTCACTTGCTGAAGCACCTGCTTTCCAAAAAGCTCCTGGGGGCGCTCCTGCTAATGTGGCTGTTGGTATCACAAGACTCGGTGGTTCAGCAGCTTTTATAGGCAAGGTAGGTGACGATGAATTTGGCAAGATGTTGGCTAATATTCTAAAAGAAAACAATGTTGACACCTCTGGCGTGCGATTTGACCACAATGCAAGAACTGCATTGGCATTTGTAACACTCAGAGCTGATGGTGAGCGCGAATTCTTATTTTTCCGTAATCCAAGTGCTGATATGCTTTTACATGAATCAGAACTTGAGATAAGTCTTCTTCAACAGGCAAAAATTTTCCATTATGGTTCAATTAGTTTGATTGATGAACCATGCAGGTCAACCCATCTAGCTGCGATGAGCATAGCCAAGAAGTCTGGTTGCATCCTTTCTTATGATCCAAATTTGCGATTGGCATTGTGGCCATCAGCAGAGTTTGCACGGGAAGAAATAATGAGCATATGGGATCAAGCAGATATTATCAAGATAAGCGAGGATGAAATAACTTTCCTGACTGGTGGTGATGATCCTTATGATGATAATGTGGTGTTGACAAAGCTTTTTCATCCTAATCTTAAGCTTTTGATAGTAACCGAAGGATCAGAGGGTTGCAGATATTACACTCAAAATTTCAGGGGTCGTGTTGCTGGTATTAAAGTAAAAGCCGTAGATACAACTGGTGCTGGTGATGCATTTGTCGGTGGGATACTCTGCAACATAGCTTCTGACTTGAGTCTTTTTCAGGATGAGAAGGGTTTACGAGAAGCTCTACTCTTCGCGAATGCCTGTGGCGCAATCACAGTAACAGAACGAGGAGCCATTCCTGCAATGCCGAAAAAAGAAGCTGTCCTCCGGTTTTTAGCTCAGGTCACTGATCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046835 GO:0050896 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

358

Amino Acids

38.65

Weight (kDa)

5.0

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	35 - 343	2.9e-79	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51830 AT5G51830
fragaria_vesca	FvH4_7g12690 FvH4_7g28710 FvH4_7g28710
malus_domestica	MD00G1004100.v1.1 MD01G1193000.v1.1 MD02G1197500.v1.1 MD15G1307900.v1.1
prunus_persica	Prupe.2G151100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1
pyrus_communis	pycom01g20360 pycom02g16100 pycom07g23930
rosa_chinensis	RchiOBHm_Chr1g0351681 RchiOBHm_Chr1g0376211
rosa_laevigata	RLG00000026619 RLG00000028390
rosa_multiflora	Rmu_sc0000061.1_g000037 Rmu_sc0001144.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282300 Rroxscaffold_4G00303620
rosa_rugosa	Rorug01G0220600 Rorug01G0394400
rosa_samantha	Rh1AG406000 Rh1BG369700 Rh1CG382400 Rh1CG382600 Rh1DG232200 Rh1DG399300 Rh1DG399500
rosa_wichuraiana	Rw1G020430 Rw1G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	3 cut(s)	74, 187, 519
AccII	CGCG	2 cut(s)	402, 971
AclWI	GGATC	4 cut(s)	584, 666, 713, 799
AcoI	YGGCCR	1 cut(s)	614
AcsI	RAATTY	5 cut(s)	281, 404, 486, 595, 820
AcuI	CTGAAG	1 cut(s)	192
AflII	CTTAAG	1 cut(s)	767
AgsI	TTSAA	3 cut(s)	63, 476, 504
AjnI	CCWGG	1 cut(s)	196
AlwI	GGATC	4 cut(s)	584, 666, 713, 799
AoxI	GGCC	1 cut(s)	614
ApeKI	GCWGC	2 cut(s)	251, 545
ApoI	RAATTY	5 cut(s)	281, 404, 486, 595, 820
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AspLEI	GCGC	3 cut(s)	206, 402, 986
AsuHPI	GGTGA	4 cut(s)	284, 407, 725, 890
BalI	TGGCCA	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	263, 532
BccI	CCATC	3 cut(s)	386, 546, 625
BceAI	ACGGC	1 cut(s)	842
BciT130I	CCWGG	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	891
BclI	TGATCA	1 cut(s)	1066
BfaI	CTAG	1 cut(s)	542
BfoI	RGCGCY	1 cut(s)	207
BfrI	CTTAAG	1 cut(s)	767
BfuAI	ACCTGC	3 cut(s)	74, 187, 519
BfuI	GTATCC	1 cut(s)	891
BisI	GCNGC	2 cut(s)	252, 546
BlsI	GCNGC	2 cut(s)	253, 547
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	1009
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	70, 585, 871
BoxI	GACNNNNGTC	1 cut(s)	924
BpiI	GAAGAC	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	1056
BpuEI	CTTGAG	2 cut(s)	479, 943
BsaJI	CCNNGG	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	1044
Bse1I	ACTGG	2 cut(s)	712, 874
Bse3DI	GCAATG	1 cut(s)	1026
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	4 cut(s)	576, 694, 757, 943
BseMI	GCAATG	1 cut(s)	1026
BseMII	CTCAG	3 cut(s)	33, 397, 1070
BseNI	ACTGG	2 cut(s)	712, 874
BseRI	GAGGAG	1 cut(s)	1020
BseXI	GCAGC	2 cut(s)	263, 532
Bsh1236I	CGCG	2 cut(s)	402, 971
BshFI	GGCC	1 cut(s)	616
BsiSI	CCGG	2 cut(s)	156, 1045
BsmI	GAATGC	1 cut(s)	979
BsnI	GGCC	1 cut(s)	616
Bsp143I	GATC	6 cut(s)	31, 589, 658, 718, 791, 1066
Bsp68I	TCGCGA	1 cut(s)	971
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	3 cut(s)	32, 396, 1069
BspFNI	CGCG	2 cut(s)	402, 971
BspLI	GGNNCC	1 cut(s)	1009
BspMI	ACCTGC	3 cut(s)	74, 187, 519
BspPI	GGATC	4 cut(s)	584, 666, 713, 799
BspTI	CTTAAG	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	1026
BsrI	ACTGG	2 cut(s)	712, 874
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	6 cut(s)	31, 589, 658, 718, 791, 1066
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	151, 994
Bst6I	CTCTTC	1 cut(s)	971
BstAFI	CTTAAG	1 cut(s)	767
BstAPI	GCANNNNNTGC	2 cut(s)	362, 629
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	3 cut(s)	19, 383, 1056
BstF5I	GGATG	4 cut(s)	576, 694, 757, 943
BstFNI	CGCG	2 cut(s)	402, 971
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	3 cut(s)	206, 402, 986
BstKTI	GATC	6 cut(s)	34, 592, 661, 721, 794, 1069
BstMBI	GATC	6 cut(s)	31, 589, 658, 718, 791, 1066
BstMWI	GCNNNNNNNGC	6 cut(s)	218, 362, 629, 881, 983, 1016
BstNI	CCWGG	1 cut(s)	198
BstPAI	GACNNNNGTC	1 cut(s)	924
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	2 cut(s)	402, 971
BstV1I	GCAGC	2 cut(s)	263, 532
BstV2I	GAAGAC	1 cut(s)	461
BsuI	GTATCC	1 cut(s)	891
BsuRI	GGCC	1 cut(s)	616
BtgZI	GCGATG	1 cut(s)	563
BtsCI	GGATG	4 cut(s)	576, 694, 757, 943
BtsIMutI	CAGTG	1 cut(s)	1062
BtuMI	TCGCGA	1 cut(s)	971
BveI	ACCTGC	3 cut(s)	74, 187, 519
Cac8I	GCNNGC	1 cut(s)	338
CfoI	GCGC	3 cut(s)	206, 402, 986
CviAII	CATG	2 cut(s)	446, 525
DdeI	CTNAG	3 cut(s)	19, 383, 1056
DpnI	GATC	6 cut(s)	33, 591, 660, 720, 793, 1068
DpnII	GATC	6 cut(s)	31, 589, 658, 718, 791, 1066
EaeI	YGGCCR	1 cut(s)	614
Eam1104I	CTCTTC	1 cut(s)	971
EarI	CTCTTC	1 cut(s)	971
Eco57I	CTGAAG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	886
FaeI	CATG	2 cut(s)	449, 528
FatI	CATG	2 cut(s)	445, 524
FauNDI	CATATG	1 cut(s)	653
FbaI	TGATCA	1 cut(s)	1066
Fnu4HI	GCNGC	2 cut(s)	252, 546
FokI	GGATG	4 cut(s)	563, 701, 744, 950
Fsp4HI	GCNGC	2 cut(s)	252, 546
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	3 cut(s)	205, 401, 985
GluI	GCNGC	2 cut(s)	252, 546
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	616
HapII	CCGG	2 cut(s)	156, 1045
HhaI	GCGC	3 cut(s)	206, 402, 986
Hin1II	CATG	2 cut(s)	449, 528
Hin6I	GCGC	3 cut(s)	204, 400, 984
HinP1I	GCGC	3 cut(s)	204, 400, 984
HincII	GTYRAC	3 cut(s)	325, 534, 744
HindII	GTYRAC	3 cut(s)	325, 534, 744
HindIII	AAGCTT	2 cut(s)	749, 770
HinfI	GANTC	4 cut(s)	59, 237, 449, 925
HpaII	CCGG	2 cut(s)	156, 1045
HphI	GGTGA	4 cut(s)	284, 407, 725, 890
Hpy166II	GTNNAC	4 cut(s)	325, 534, 744, 950
Hpy188I	TCNGA	5 cut(s)	79, 386, 454, 796, 919
Hpy188III	TCNNGA	5 cut(s)	26, 676, 703, 935, 970
Hpy8I	GTNNAC	4 cut(s)	325, 534, 744, 950
HpyAV	CCTTC	3 cut(s)	81, 782, 937
HpyCH4III	ACNGT	2 cut(s)	151, 994
HpyF10VI	GCNNNNNNNGC	6 cut(s)	218, 362, 629, 881, 983, 1016
HpyF3I	CTNAG	3 cut(s)	19, 383, 1056
Hsp92II	CATG	2 cut(s)	449, 528
HspAI	GCGC	3 cut(s)	204, 400, 984
Ksp22I	TGATCA	1 cut(s)	1066
Kzo9I	GATC	6 cut(s)	31, 589, 658, 718, 791, 1066
LmnI	GCTCC	3 cut(s)	199, 211, 1007
Lsp1109I	GCAGC	2 cut(s)	263, 532
LweI	GCATC	3 cut(s)	70, 585, 871
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	5 cut(s)	272, 376, 781, 994, 1060
MalI	GATC	6 cut(s)	33, 591, 660, 720, 793, 1068
MboI	GATC	6 cut(s)	31, 589, 658, 718, 791, 1066
MboII	GAAGA	4 cut(s)	461, 464, 650, 958
MlsI	TGGCCA	1 cut(s)	616
MluCI	AATT	7 cut(s)	41, 281, 404, 486, 504, 595, 820
MluNI	TGGCCA	1 cut(s)	616
MlyI	GAGTC	2 cut(s)	231, 934
MnlI	CCTC	5 cut(s)	340, 679, 790, 998, 1052
Mox20I	TGGCCA	1 cut(s)	616
Mph1103I	ATGCAT	1 cut(s)	886
MscI	TGGCCA	1 cut(s)	616
MseI	TTAA	2 cut(s)	768, 846
Msp20I	TGGCCA	1 cut(s)	616
MspCI	CTTAAG	1 cut(s)	767
MspI	CCGG	2 cut(s)	156, 1045
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	979
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	2 cut(s)	402, 971
MwoI	GCNNNNNNNGC	6 cut(s)	218, 362, 629, 881, 983, 1016
NdeI	CATATG	1 cut(s)	653
NdeII	GATC	6 cut(s)	31, 589, 658, 718, 791, 1066
NlaIII	CATG	2 cut(s)	449, 528
NlaIV	GGNNCC	1 cut(s)	1009
NmuCI	GTSAC	2 cut(s)	272, 1060
NruI	TCGCGA	1 cut(s)	971
NsiI	ATGCAT	1 cut(s)	886
PaqCI	CACCTGC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	979
PfeI	GAWTC	2 cut(s)	59, 449
PkrI	GCNGC	2 cut(s)	253, 547
PleI	GAGTC	2 cut(s)	231, 933
PpsI	GAGTC	2 cut(s)	231, 933
PshAI	GACNNNNGTC	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	1009
RruI	TCGCGA	1 cut(s)	971
SaqAI	TTAA	2 cut(s)	768, 846
SatI	GCNGC	2 cut(s)	252, 546
Sau3AI	GATC	6 cut(s)	31, 589, 658, 718, 791, 1066
SchI	GAGTC	2 cut(s)	231, 934
ScrFI	CCNGG	1 cut(s)	198
SfaNI	GCATC	3 cut(s)	70, 585, 871
SmlI	CTYRAG	3 cut(s)	458, 767, 922
SmoI	CTYRAG	3 cut(s)	458, 767, 922
Sse9I	AATT	7 cut(s)	41, 281, 404, 486, 504, 595, 820
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	2 cut(s)	151, 994
TasI	AATT	7 cut(s)	41, 281, 404, 486, 504, 595, 820
TfiI	GAWTC	2 cut(s)	59, 449
Tru1I	TTAA	2 cut(s)	768, 846
Tru9I	TTAA	2 cut(s)	768, 846
TscAI	CASTG	1 cut(s)	1069
TseFI	GTSAC	2 cut(s)	272, 1060
TseI	GCWGC	2 cut(s)	251, 545
Tsp45I	GTSAC	2 cut(s)	272, 1060
TspDTI	ATGAA	6 cut(s)	63, 294, 462, 534, 705, 746
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	1069
Vha464I	CTTAAG	1 cut(s)	767
XapI	RAATTY	5 cut(s)	281, 404, 486, 595, 820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.