Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003570

Physical Location & Seq

Genomic Coordinates Forward (+)

61916704 .. 61918415

Gene Structure 1712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG399300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCTACTACTCCAAACTCAGTTCTTGATGATCTCAAAAAATCGGATTTGGCTAAAGATTCAAAAAATCCATCATCAGATGCAGGGTTAGAGAATAACAAATCGCTGGTTGTTTGCTTTGGGGAAATGCTGATTGACTTTGTGCCAACTGTTGCCGGAGTTTCACTTGCTGAAGCACCTGCTTTCCAAAAAGCTCCCGGGGGCGCTCCTGCTAATGTGGCTGTTGGTATCACAAGACTCGGTGGTTCAGCAGCTTTTATAGGCAAGGTAGGTGACGATGAATTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046835 GO:0050896 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

96

Amino Acids

9.68

Weight (kDa)

4.51

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	35 - 96	3.4e-17	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51830 AT5G51830
fragaria_vesca	FvH4_7g12690 FvH4_7g28710 FvH4_7g28710
malus_domestica	MD00G1004100.v1.1 MD01G1193000.v1.1 MD02G1197500.v1.1 MD15G1307900.v1.1
prunus_persica	Prupe.2G151100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1
pyrus_communis	pycom01g20360 pycom02g16100 pycom07g23930
rosa_chinensis	RchiOBHm_Chr1g0351681 RchiOBHm_Chr1g0376211
rosa_laevigata	RLG00000026619 RLG00000028390
rosa_multiflora	Rmu_sc0000061.1_g000037 Rmu_sc0001144.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282300 Rroxscaffold_4G00303620
rosa_rugosa	Rorug01G0220600 Rorug01G0394400
rosa_samantha	Rh1AG406000 Rh1BG369700 Rh1CG382400 Rh1CG382600 Rh1DG232200 Rh1DG399300 Rh1DG399500
rosa_wichuraiana	Rw1G020430 Rw1G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	63
AluBI	AGCT	2 cut(s)	194, 254
AluI	AGCT	2 cut(s)	194, 254
Ama87I	CYCGRG	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	198, 199
AsuHPI	GGTGA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	79
BcnI	CCSGG	2 cut(s)	198, 199
BfaI	CTAG	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	198, 199
BmeT110I	CYCGRG	1 cut(s)	197
BmrFI	CCNGG	2 cut(s)	198, 199
BmsI	GCATC	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	198, 199
BsaJI	CCNNGG	2 cut(s)	197, 198
BseDI	CCNNGG	2 cut(s)	197, 198
BseMII	CTCAG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	156, 198
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	197, 198
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	196, 197
BstV1I	GCAGC	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	206
Cfr9I	CCCGGG	1 cut(s)	197
CviJI	RGCY	6 cut(s)	5, 53, 194, 221, 254, 288
CviKI_1	RGCY	6 cut(s)	5, 53, 194, 221, 254, 288
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	197
FaiI	YATR	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	289
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	207
HapII	CCGG	2 cut(s)	156, 198
HhaI	GCGC	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	2 cut(s)	59, 237
HpaII	CCGG	2 cut(s)	156, 198
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	46, 79
Hpy188III	TCNNGA	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	199, 211
LpnPI	CCDG	6 cut(s)	69, 92, 169, 192, 211, 222
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MluCI	AATT	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	231
MspI	CCGG	2 cut(s)	156, 198
MspR9I	CCNGG	2 cut(s)	198, 199
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	2 cut(s)	198, 199
NdeII	GATC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	272
PaqCI	CACCTGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	2 cut(s)	198, 199
SetI	ASST	5 cut(s)	181, 196, 256, 270, 274
SfaNI	GCATC	1 cut(s)	70
SmaI	CCCGGG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	281
SspMI	CTAG	1 cut(s)	289
StyD4I	CCNGG	2 cut(s)	196, 197
TaaI	ACNGT	1 cut(s)	151
TasI	AATT	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	272
TspMI	CCCGGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	281
XmaI	CCCGGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.