Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003570

Physical Location & Seq

Genomic Coordinates Forward (+)

65252444 .. 65254916

Gene Structure 2473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG382400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTACTACTCCAAACTCAGTTCTTGATGATCTCAAAAAATCGGATTTGGCTAAAGATTCAAAAAATCCATCATCAGATGCAGGGTTAGAGAATAACAAATCGCTGGTTGTTTGCTTTGGGGAAATGCTGATTGACTTTGTGCCAACTGTTGCCGGAGTTTCACTTGCTGAAGCACCTGCTTTCCAAAAAGCTCCCGGGGGCGCTCCTGCTAATGTGGCTGTTGGTATCACAAGACTCGGTGGTTCAGCAGCTTTTATAGGCAAGGCACTCAAAATCTTTGACTCGACAGAAAAAGGTACAAAAACTACTCGCTTCCCCTGGGCTCGAGCCACATCTGATTCGTTTTCTTCGGCAAACAACCCCACTCTCGTCACTGTTTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046835 GO:0050896 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

129

Amino Acids

13.32

Weight (kDa)

7.82

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	35 - 89	3.2e-12	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51830 AT5G51830
fragaria_vesca	FvH4_7g12690 FvH4_7g28710 FvH4_7g28710
malus_domestica	MD00G1004100.v1.1 MD01G1193000.v1.1 MD02G1197500.v1.1 MD15G1307900.v1.1
prunus_persica	Prupe.2G151100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1
pyrus_communis	pycom01g20360 pycom02g16100 pycom07g23930
rosa_chinensis	RchiOBHm_Chr1g0351681 RchiOBHm_Chr1g0376211
rosa_laevigata	RLG00000026619 RLG00000028390
rosa_multiflora	Rmu_sc0000061.1_g000037 Rmu_sc0001144.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282300 Rroxscaffold_4G00303620
rosa_rugosa	Rorug01G0220600 Rorug01G0394400
rosa_samantha	Rh1AG406000 Rh1BG369700 Rh1CG382400 Rh1CG382600 Rh1DG232200 Rh1DG399300 Rh1DG399500
rosa_wichuraiana	Rw1G020430 Rw1G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	194, 254
AluI	AGCT	2 cut(s)	194, 254
Ama87I	CYCGRG	2 cut(s)	197, 327
ApeKI	GCWGC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	198, 199
AvaI	CYCGRG	2 cut(s)	197, 327
BanII	GRGCYC	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	2 cut(s)	198, 199
BfoI	RGCGCY	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	3 cut(s)	198, 199, 322
BmeT110I	CYCGRG	2 cut(s)	197, 327
BmrFI	CCNGG	3 cut(s)	198, 199, 322
BmsI	GCATC	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	198, 199
BsaJI	CCNNGG	4 cut(s)	197, 198, 320, 321
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	4 cut(s)	197, 198, 320, 321
BseMII	CTCAG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	263
BsiHKCI	CYCGRG	2 cut(s)	197, 327
BsiSI	CCGG	2 cut(s)	156, 198
BsoBI	CYCGRG	2 cut(s)	197, 327
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	187
BssECI	CCNNGG	4 cut(s)	197, 198, 320, 321
BssMI	GATC	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	151, 379
BstDEI	CTNAG	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	3 cut(s)	196, 197, 320
BstV1I	GCAGC	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	206
Cfr9I	CCCGGG	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	300
CviJI	RGCY	7 cut(s)	5, 53, 194, 221, 254, 326, 332
CviKI_1	RGCY	7 cut(s)	5, 53, 194, 221, 254, 326, 332
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	2 cut(s)	197, 327
EcoRII	CCWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	328
FaiI	YATR	2 cut(s)	260, 384
Fnu4HI	GCNGC	1 cut(s)	252
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	252
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	207
HapII	CCGG	2 cut(s)	156, 198
HhaI	GCGC	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	4 cut(s)	59, 237, 284, 341
HpaII	CCGG	2 cut(s)	156, 198
Hpy188I	TCNGA	3 cut(s)	46, 79, 340
Hpy188III	TCNNGA	1 cut(s)	26
HpyCH4III	ACNGT	2 cut(s)	151, 379
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	199, 211
LpnPI	CCDG	8 cut(s)	69, 92, 169, 192, 211, 222, 307, 334
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	328
MlyI	GAGTC	2 cut(s)	231, 278
MseI	TTAA	1 cut(s)	388
MspI	CCGG	2 cut(s)	156, 198
MspR9I	CCNGG	3 cut(s)	198, 199, 322
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	2 cut(s)	198, 199
NdeII	GATC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	373
PaeR7I	CTCGAG	1 cut(s)	327
PaqCI	CACCTGC	1 cut(s)	187
PasI	CCCWGGG	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	59, 341
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	2 cut(s)	231, 278
PpsI	GAGTC	2 cut(s)	231, 278
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspXI	VCTCGAGB	1 cut(s)	327
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	2 cut(s)	231, 278
ScrFI	CCNGG	3 cut(s)	198, 199, 322
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	4 cut(s)	181, 196, 256, 301
SfaNI	GCATC	1 cut(s)	70
Sfr274I	CTCGAG	1 cut(s)	327
SlaI	CTCGAG	1 cut(s)	327
SmaI	CCCGGG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	196, 197, 320
TaaI	ACNGT	2 cut(s)	151, 379
TaqI	TCGA	2 cut(s)	287, 328
TfiI	GAWTC	2 cut(s)	59, 341
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	373
TspMI	CCCGGG	1 cut(s)	197
TspRI	CASTG	1 cut(s)	382
XhoI	CTCGAG	1 cut(s)	327
XmaI	CCCGGG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.