Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003570

Physical Location & Seq

Genomic Coordinates Forward (+)

18784837 .. 18787169

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTAATATTCTCGCCCCAGCTCTGGACAAAAAATTGGTTTTGCGTGAAGATTCTAAAGATGAATCATCAGATAAAAAAGGAGGGTCACAAGATGACAAGTCCCTGGTTGTTTGCTTCGGGGAAATGCTAATCGACTTTGTGCCCACAGTTAGTGGAGTTTCACTTGCTGAAGCATCTGCTTTTAAAAAAGCTCCTGGTGGTGCTCCTGCTAATGTCGCTGTTGGTGTTGCAAGACTGGGTGGTTCAGCAGGTTTCATAGGCAAGGTAGGCGATGATGAATTTGGATACATGTTGTCTGACATTCTAAAACAAAACAATGTTGACAATTCTGGCGTTCGATTTGACCCCAATGCAAGAACTGCATTGGCTTTTGTTACACTCAGAGCTGACGGAGAGCGTGAATTCCTGTTCTTCCGTCATCCAAGTGCTGATATGCTTCTACTTGAATCAGAGCTTGACATAAATCTAATTAAGAAGGCAAAGATCTTCCATTATGGTTCAATTAGTTTGATTGATGAACCATGCAGGTCAACCCATCTAGCTGCTATGAAAATTGCCAAGGAGTCTGGGTGCATCCTTTCTTATGACCCAAATTTAAGATTGCCATTGTGGCCGTCGGAAGATGCTGCACGGAAAGGCATAATGAGTATATGGGATCAAGCAGATATAATCAAGATAAGCGAGGATGAAATTAGATTCCTGACTGGTGGTGATCGATCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046835 GO:0050896 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

243

Amino Acids

26.24

Weight (kDa)

5.1

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51830 AT5G51830
fragaria_vesca	FvH4_7g12690 FvH4_7g28710 FvH4_7g28710
malus_domestica	MD00G1004100.v1.1 MD01G1193000.v1.1 MD02G1197500.v1.1 MD15G1307900.v1.1
prunus_persica	Prupe.2G151100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1
pyrus_communis	pycom01g20360 pycom02g16100 pycom07g23930
rosa_chinensis	RchiOBHm_Chr1g0351681 RchiOBHm_Chr1g0376211
rosa_laevigata	RLG00000026619 RLG00000028390
rosa_multiflora	Rmu_sc0000061.1_g000037 Rmu_sc0001144.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282300 Rroxscaffold_4G00303620
rosa_rugosa	Rorug01G0220600 Rorug01G0394400
rosa_samantha	Rh1AG406000 Rh1BG369700 Rh1CG382400 Rh1CG382600 Rh1DG232200 Rh1DG399300 Rh1DG399500
rosa_wichuraiana	Rw1G020430 Rw1G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	242, 519
AclWI	GGATC	2 cut(s)	666, 714
AcoI	YGGCCR	1 cut(s)	614
AcsI	RAATTY	3 cut(s)	281, 404, 595
AcuI	CTGAAG	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	25
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	449, 504
AjnI	CCWGG	2 cut(s)	105, 196
AluBI	AGCT	5 cut(s)	23, 194, 389, 457, 545
AluI	AGCT	5 cut(s)	23, 194, 389, 457, 545
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	666, 714
AoxI	GGCC	1 cut(s)	614
ApeKI	GCWGC	2 cut(s)	545, 629
ApoI	RAATTY	3 cut(s)	281, 404, 595
AsuHPI	GGTGA	1 cut(s)	725
BaeGI	GKGCMC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	532, 616
BccI	CCATC	1 cut(s)	546
BceAI	ACGGC	1 cut(s)	601
BciT130I	CCWGG	2 cut(s)	107, 198
BciVI	GTATCC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	542
BfuAI	ACCTGC	2 cut(s)	242, 519
BfuI	GTATCC	1 cut(s)	281
BglI	GCCNNNNNGGC	1 cut(s)	613
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	2 cut(s)	546, 630
BlsI	GCNGC	2 cut(s)	547, 631
Bme1390I	CCNGG	2 cut(s)	107, 198
BmrFI	CCNGG	2 cut(s)	107, 198
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	3 cut(s)	185, 585, 616
BmuI	ACTGGG	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	718
BsaJI	CCNNGG	2 cut(s)	105, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	243, 712
BseBI	CCWGG	2 cut(s)	107, 198
BseCI	ATCGAT	1 cut(s)	718
BseDI	CCNNGG	2 cut(s)	105, 561
BseGI	GGATG	3 cut(s)	421, 576, 694
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	397
BseNI	ACTGG	2 cut(s)	243, 712
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	532, 616
BseYI	CCCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	616
BshVI	ATCGAT	1 cut(s)	718
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	147, 208
Bsp143I	GATC	4 cut(s)	486, 658, 715, 719
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	1 cut(s)	396
BspDI	ATCGAT	1 cut(s)	718
BspMI	ACCTGC	2 cut(s)	242, 519
BspPI	GGATC	2 cut(s)	666, 714
BsrI	ACTGG	2 cut(s)	243, 712
BssECI	CCNNGG	2 cut(s)	105, 561
BssMI	GATC	4 cut(s)	486, 658, 715, 719
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	107, 198
Bst4CI	ACNGT	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	383
BstF5I	GGATG	3 cut(s)	421, 576, 694
BstKTI	GATC	4 cut(s)	489, 661, 718, 722
BstMBI	GATC	4 cut(s)	486, 658, 715, 719
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 270, 362, 613
BstNI	CCWGG	2 cut(s)	107, 198
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	105, 196
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	532, 616
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
Bsu15I	ATCGAT	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	616
BsuTUI	ATCGAT	1 cut(s)	718
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	421, 576, 694
BveI	ACCTGC	2 cut(s)	242, 519
ClaI	ATCGAT	1 cut(s)	718
CviAII	CATG	2 cut(s)	292, 525
CviJI	RGCY	8 cut(s)	5, 23, 194, 371, 389, 457, 545, 616
CviKI_1	RGCY	8 cut(s)	5, 23, 194, 371, 389, 457, 545, 616
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	4 cut(s)	488, 660, 717, 721
DpnII	GATC	4 cut(s)	486, 658, 715, 719
DraI	TTTAAA	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	561
Eco57I	CTGAAG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	105, 196
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	2 cut(s)	295, 528
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	291, 524
Fnu4HI	GCNGC	2 cut(s)	546, 630
FokI	GGATG	3 cut(s)	408, 563, 701
Fsp4HI	GCNGC	2 cut(s)	546, 630
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	2 cut(s)	546, 630
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	616
Hin1II	CATG	2 cut(s)	295, 528
HincII	GTYRAC	2 cut(s)	325, 534
HindII	GTYRAC	2 cut(s)	325, 534
HinfI	GANTC	5 cut(s)	53, 65, 449, 566, 699
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	2 cut(s)	325, 534
Hpy188I	TCNGA	5 cut(s)	73, 301, 386, 454, 622
Hpy188III	TCNNGA	3 cut(s)	26, 676, 703
Hpy8I	GTNNAC	2 cut(s)	325, 534
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	6 cut(s)	233, 356, 365, 528, 576, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 270, 362, 613
HpyF3I	CTNAG	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	295, 528
Kzo9I	GATC	4 cut(s)	486, 658, 715, 719
LmnI	GCTCC	2 cut(s)	199, 211
Lsp1109I	GCAGC	2 cut(s)	532, 616
LweI	GCATC	3 cut(s)	185, 585, 616
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	2 cut(s)	87, 376
MalI	GATC	4 cut(s)	488, 660, 717, 721
MboI	GATC	4 cut(s)	486, 658, 715, 719
MboII	GAAGA	4 cut(s)	62, 406, 481, 635
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	147, 208
MluCI	AATT	9 cut(s)	35, 281, 328, 404, 471, 504, 555, 595, 693
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	2 cut(s)	77, 679
MseI	TTAA	3 cut(s)	186, 474, 599
MslI	CAYNNNNRTG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	107, 198
MvaI	CCWGG	2 cut(s)	107, 198
MwoI	GCNNNNNNNGC	4 cut(s)	218, 270, 362, 613
NdeII	GATC	4 cut(s)	486, 658, 715, 719
NlaIII	CATG	2 cut(s)	295, 528
NmuCI	GTSAC	1 cut(s)	87
NspI	RCATGY	1 cut(s)	295
PciI	ACATGT	1 cut(s)	291
PfeI	GAWTC	4 cut(s)	53, 65, 449, 699
PkrI	GCNGC	2 cut(s)	547, 631
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PscI	ACATGT	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	105, 196
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	2 cut(s)	105, 196
PsuI	RGATCY	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	186, 474, 599
SatI	GCNGC	2 cut(s)	546, 630
Sau3AI	GATC	4 cut(s)	486, 658, 715, 719
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	107, 198
SduI	GDGCHC	2 cut(s)	147, 208
SetI	ASST	8 cut(s)	25, 196, 256, 270, 391, 459, 533, 547
SfaNI	GCATC	3 cut(s)	185, 585, 616
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	9 cut(s)	35, 281, 328, 404, 471, 504, 555, 595, 693
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	2 cut(s)	105, 196
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	3 cut(s)	135, 340, 718
TasI	AATT	9 cut(s)	35, 281, 328, 404, 471, 504, 555, 595, 693
TfiI	GAWTC	4 cut(s)	53, 65, 449, 699
Tru1I	TTAA	3 cut(s)	186, 474, 599
Tru9I	TTAA	3 cut(s)	186, 474, 599
TseFI	GTSAC	1 cut(s)	87
TseI	GCWGC	2 cut(s)	545, 629
Tsp45I	GTSAC	1 cut(s)	87
TspDTI	ATGAA	6 cut(s)	78, 247, 294, 534, 566, 705
TspGWI	ACGGA	3 cut(s)	407, 408, 649
XapI	RAATTY	3 cut(s)	281, 404, 595
XceI	RCATGY	1 cut(s)	295
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.