Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003570

Physical Location & Seq

Genomic Coordinates Reverse (-)

30840702 .. 30842761

Gene Structure 2060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1307900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCTAATAATCTCGCTCCAGTTCTGGACAAAAAATTGGTTTTGCATGAAGATTCTAAAGATGCATCCTCCCATAAAAAAGGAGGGTCACAAGATGACAAGTCCCTGGTTGTTTGCTTTGGGGAAATGCTAATTGACTTTGTGCCCACTGTTGGTGGAGTTTCACTTGCTGAAGCACTTGCTTTTAAGAAAGCTCCTAGTGGTGCTCCTGCTAATGTCGCTGTTGGAGTCGCAAGACTGGGTGGTTCAGCAGGTTTCATAGGCAAGAAAACCGACTCATCTACCTTTGCCTTTTGGTCAAAGAGCTCTGTGGATATTGAGCCAATGCGTATTAGATTACAGTCAAATAGTTACACTACCAACACCTTTTTGGATACAGTGACTGCTGCAACTATACAGGTCCCCGATGAGGCAGTTACAAAATGCACGGCCTATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046835 GO:0050896 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

147

Amino Acids

15.29

Weight (kDa)

6.72

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	35 - 116	6.1e-11	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51830 AT5G51830
fragaria_vesca	FvH4_7g12690 FvH4_7g28710 FvH4_7g28710
malus_domestica	MD00G1004100.v1.1 MD01G1193000.v1.1 MD02G1197500.v1.1 MD15G1307900.v1.1
prunus_persica	Prupe.2G151100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1 Prupe.2G287100_v2.0.a1
pyrus_communis	pycom01g20360 pycom02g16100 pycom07g23930
rosa_chinensis	RchiOBHm_Chr1g0351681 RchiOBHm_Chr1g0376211
rosa_laevigata	RLG00000026619 RLG00000028390
rosa_multiflora	Rmu_sc0000061.1_g000037 Rmu_sc0001144.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282300 Rroxscaffold_4G00303620
rosa_rugosa	Rorug01G0220600 Rorug01G0394400
rosa_samantha	Rh1AG406000 Rh1BG369700 Rh1CG382400 Rh1CG382600 Rh1DG232200 Rh1DG399300 Rh1DG399500
rosa_wichuraiana	Rw1G020430 Rw1G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	152, 409
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	2 cut(s)	194, 306
AluI	AGCT	2 cut(s)	194, 306
Alw21I	GWGCWC	2 cut(s)	208, 308
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	208, 308
BbvI	GCAGC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	52, 74
BmuI	ACTGGG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 409
Bse1I	ACTGG	2 cut(s)	20, 243
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	152, 409
BseNI	ACTGG	2 cut(s)	20, 243
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	1 cut(s)	431
BsiHKAI	GWGCWC	2 cut(s)	208, 308
BslFI	GGGAC	2 cut(s)	88, 386
BslI	CCNNNNNNNGG	2 cut(s)	152, 409
BsmFI	GGGAC	2 cut(s)	88, 386
BsnI	GGCC	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	147, 208, 308
BspANI	GGCC	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	20, 243
BssECI	CCNNGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	3 cut(s)	151, 342, 379
BstF5I	GGATG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	147, 384
BveI	ACCTGC	1 cut(s)	242
CaiI	CAGNNNCTG	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	400
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	5 cut(s)	5, 194, 306, 322, 431
CviKI_1	RGCY	5 cut(s)	5, 194, 306, 322, 431
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	1 cut(s)	50
FaiI	YATR	5 cut(s)	48, 75, 260, 395, 435
FaqI	GGGAC	2 cut(s)	88, 386
FatI	CATG	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	1 cut(s)	52
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	431
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	3 cut(s)	53, 228, 275
Hpy188III	TCNNGA	1 cut(s)	26
HpyCH4III	ACNGT	3 cut(s)	151, 342, 379
HpyCH4V	TGCA	4 cut(s)	46, 65, 389, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	50
LmnI	GCTCC	3 cut(s)	22, 199, 211
LpnPI	CCDG	8 cut(s)	11, 33, 92, 119, 222, 224, 237, 383
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	52, 74
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	4 cut(s)	87, 350, 379, 415
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	3 cut(s)	147, 208, 308
MluCI	AATT	2 cut(s)	35, 132
MlyI	GAGTC	2 cut(s)	237, 269
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	77, 79, 403
Mph1103I	ATGCAT	1 cut(s)	67
MseI	TTAA	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	87, 379
NsiI	ATGCAT	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	2 cut(s)	236, 269
PpsI	GAGTC	2 cut(s)	236, 269
PpuMI	RGGWCCY	1 cut(s)	400
Psp124BI	GAGCTC	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	400
PspPPI	RGGWCCY	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	2 cut(s)	237, 269
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	3 cut(s)	147, 208, 308
SetI	ASST	6 cut(s)	196, 256, 287, 308, 368, 402
SfaNI	GCATC	2 cut(s)	52, 74
SinI	GGWCC	1 cut(s)	400
Sse9I	AATT	2 cut(s)	35, 132
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	151, 342, 379
TasI	AATT	2 cut(s)	35, 132
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	154, 384
TseFI	GTSAC	2 cut(s)	87, 379
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	2 cut(s)	87, 379
TspDTI	ATGAA	2 cut(s)	63, 247
TspRI	CASTG	2 cut(s)	154, 384
VpaK11BI	GGWCC	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XspI	CTAG	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.