Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Reverse (-)

12318193 .. 12319744

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCCTCAAGAGTTGGAACCCATATAAAGCGACACCGGAGCCGCCGAGATTGGACGGAAATTCCCTATGACATTACGGCGTCGATACTGTCACGGCTTGATGGAGACACTGAGTCCTTGGCTGCGGCTGAGATGGTGTGCAAGACGTGGCGTGAAATCTGTAAAGACCCTAAGCTGTGGCGCACCATCGACTTCCACAGCAACCGTACGATCTACATGTTAGGGCCGCCACGGCGGTTCGATATAGTGAAGATGTGCCGCCACGCCATACACCGTAGTTCCGGTAGCTTTATCAATGTCAACGTGGACTATTTTTGTAAGGATGAGCTGCTCAAATATATCACTAACAGTTCAGCTGGATTTATTAGACACCTCAGTTTGTTCAATTGTAACACTATAACAGATGAGGCGTTGTGCGAAGCAGCTTTGAGACTCCCACTTTTGGAGGAACTTGACCTTTCAATGTGCAAAGTCTACAGTAAATCTCTAGAAGTAGTTGGACGTTGCTGCCCGCTTTTGAAATCATTCAAATTTAACAACCGAATGGCCAAATATAACCATAGGTGGTATTACGACCGTTTTGACGACAAGGATGCAATTGCTATATCAGAAACCATGCATGGTTTACGTCTCCTTGCGATGCAGAATAATGAACTGAGTTGCAATGGCTTGGAGAAAATTCTTGATTCTTGTCCTCAACTCCAGATCCTTGATTTGCGTAAGTGTCAGAAACTGAAGAAGATGAGCACAGAGTTGGAAATAAGATGTGTTGAAAGAATTAAGAAGTTGTGGCTCCCGAGCGATCCTTGTAGTGAATCGGCCGCGGACTTAAACATGTTGGGAAAACCATGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

286

Amino Acids

33.04

Weight (kDa)

8.76

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	18 - 65	7.7e-12	F-box-like
F-box	PF00646	18 - 61	8.7e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	1 cut(s)	824
AciI	CCGC	8 cut(s)	43, 125, 227, 235, 259, 512, 822, 824
AclWI	GGATC	2 cut(s)	700, 797
AcoI	YGGCCR	2 cut(s)	546, 819
AcsI	RAATTY	3 cut(s)	60, 530, 678
AcuI	CTGAAG	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	442
AflIII	ACRYGT	2 cut(s)	216, 834
AgsI	TTSAA	5 cut(s)	385, 462, 520, 529, 773
AhdI	GACNNNNNGTC	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	147
AluBI	AGCT	5 cut(s)	175, 288, 328, 356, 425
AluI	AGCT	5 cut(s)	175, 288, 328, 356, 425
Alw21I	GWGCWC	1 cut(s)	749
Alw26I	GTCTC	3 cut(s)	99, 424, 635
AlwI	GGATC	2 cut(s)	700, 797
AlwNI	CAGNNNCTG	1 cut(s)	733
Ama87I	CYCGRG	1 cut(s)	796
AoxI	GGCC	4 cut(s)	3, 224, 546, 819
ApeKI	GCWGC	4 cut(s)	122, 328, 422, 507
ApoI	RAATTY	3 cut(s)	60, 530, 678
Asp700I	GAANNNNTTC	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	796
BalI	TGGCCA	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	749
BbvI	GCAGC	4 cut(s)	109, 315, 434, 494
BccI	CCATC	3 cut(s)	95, 127, 194
BceAI	ACGGC	3 cut(s)	93, 110, 248
BcgI	CGANNNNNNTGC	2 cut(s)	575, 609
BcoDI	GTCTC	3 cut(s)	99, 424, 635
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	475
BglI	GCCNNNNNGGC	1 cut(s)	232
BisI	GCNGC	9 cut(s)	43, 123, 126, 227, 259, 329, 423, 508, 822
BlsI	GCNGC	9 cut(s)	44, 124, 127, 228, 260, 330, 424, 509, 823
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	796
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	3 cut(s)	19, 41, 794
BmsI	GCATC	2 cut(s)	583, 630
BpmI	CTGGAG	1 cut(s)	686
Bpu10I	CCTNAGC	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	117, 230, 822
BsaWI	WCCGGW	2 cut(s)	36, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	670
BseDI	CCNNGG	3 cut(s)	117, 230, 822
BseGI	GGATG	2 cut(s)	328, 598
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	4 cut(s)	102, 120, 388, 647
BseX3I	CGGCCG	1 cut(s)	819
BseXI	GCAGC	4 cut(s)	109, 315, 434, 494
Bsh1236I	CGCG	1 cut(s)	824
Bsh1285I	CGRYCG	2 cut(s)	577, 822
BshFI	GGCC	4 cut(s)	5, 226, 548, 821
BsiEI	CGRYCG	2 cut(s)	577, 822
BsiHKAI	GWGCWC	1 cut(s)	749
BsiHKCI	CYCGRG	1 cut(s)	796
BsiSI	CCGG	2 cut(s)	37, 282
BsiWI	CGTACG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	3 cut(s)	99, 424, 635
BsmBI	CGTCTC	1 cut(s)	635
BsnI	GGCC	4 cut(s)	5, 226, 548, 821
BsoBI	CYCGRG	1 cut(s)	796
Bsp1286I	GDGCHC	1 cut(s)	749
Bsp143I	GATC	3 cut(s)	210, 705, 802
BspACI	CCGC	8 cut(s)	43, 125, 227, 235, 259, 512, 822, 824
BspANI	GGCC	4 cut(s)	5, 226, 548, 821
BspCNI	CTCAG	4 cut(s)	103, 121, 387, 648
BspFNI	CGCG	1 cut(s)	824
BspLI	GGNNCC	3 cut(s)	19, 41, 794
BspPI	GGATC	2 cut(s)	700, 797
BsrDI	GCAATG	1 cut(s)	670
BssECI	CCNNGG	3 cut(s)	117, 230, 822
BssMI	GATC	3 cut(s)	210, 705, 802
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	6 cut(s)	90, 206, 275, 350, 479, 578
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	5 cut(s)	111, 129, 171, 374, 656
BstDSI	CCRYGG	2 cut(s)	230, 822
BstF5I	GGATG	2 cut(s)	328, 598
BstFNI	CGCG	1 cut(s)	824
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	3 cut(s)	213, 708, 805
BstMAI	GTCTC	3 cut(s)	99, 424, 635
BstMBI	GATC	3 cut(s)	210, 705, 802
BstMCI	CGRYCG	2 cut(s)	577, 822
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNSI	RCATGY	2 cut(s)	220, 838
BstSFI	CTRYAG	1 cut(s)	475
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	4 cut(s)	109, 315, 434, 494
BstX2I	RGATCY	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	705
BstZI	CGGCCG	1 cut(s)	819
BsuRI	GGCC	4 cut(s)	5, 226, 548, 821
BtgI	CCRYGG	2 cut(s)	230, 822
BtgZI	GCGATG	1 cut(s)	653
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	328, 598
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	512
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	224
Cfr42I	CCGCGG	1 cut(s)	825
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	5 cut(s)	217, 616, 620, 835, 849
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	5 cut(s)	111, 129, 171, 374, 656
DpnI	GATC	3 cut(s)	212, 707, 804
DpnII	GATC	3 cut(s)	210, 705, 802
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	2 cut(s)	546, 819
EagI	CGGCCG	1 cut(s)	819
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	819
Eco130I	CCWWGG	1 cut(s)	117
Eco52I	CGGCCG	1 cut(s)	819
Eco57I	CTGAAG	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	796
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	635
FaeI	CATG	5 cut(s)	220, 619, 623, 838, 852
FatI	CATG	5 cut(s)	216, 615, 619, 834, 848
FauI	CCCGC	1 cut(s)	519
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	9 cut(s)	43, 123, 126, 227, 259, 329, 423, 508, 822
FokI	GGATG	2 cut(s)	335, 605
Fsp4HI	GCNGC	9 cut(s)	43, 123, 126, 227, 259, 329, 423, 508, 822
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	9 cut(s)	43, 123, 126, 227, 259, 329, 423, 508, 822
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	4 cut(s)	5, 226, 548, 821
HapII	CCGG	2 cut(s)	37, 282
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	5 cut(s)	220, 619, 623, 838, 852
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	4 cut(s)	113, 432, 686, 815
HpaII	CCGG	2 cut(s)	37, 282
Hpy166II	GTNNAC	4 cut(s)	301, 307, 475, 626
Hpy188I	TCNGA	2 cut(s)	610, 729
Hpy188III	TCNNGA	5 cut(s)	9, 488, 683, 703, 796
Hpy8I	GTNNAC	4 cut(s)	301, 307, 475, 626
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4III	ACNGT	6 cut(s)	90, 206, 275, 350, 479, 578
HpyCH4IV	ACGT	4 cut(s)	146, 303, 502, 628
HpyCH4V	TGCA	6 cut(s)	141, 468, 596, 619, 643, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	5 cut(s)	111, 129, 171, 374, 656
HpySE526I	ACGT	4 cut(s)	146, 303, 502, 628
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	5 cut(s)	220, 619, 623, 838, 852
HspAI	GCGC	1 cut(s)	181
KspI	CCGCGG	1 cut(s)	825
Kzo9I	GATC	3 cut(s)	210, 705, 802
LmnI	GCTCC	2 cut(s)	39, 798
LpnPI	CCDG	4 cut(s)	50, 295, 342, 716
Lsp1109I	GCAGC	4 cut(s)	109, 315, 434, 494
LweI	GCATC	2 cut(s)	583, 630
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	4 cut(s)	146, 303, 502, 628
MaeIII	GTNAC	2 cut(s)	90, 389
MalI	GATC	3 cut(s)	212, 707, 804
MboI	GATC	3 cut(s)	210, 705, 802
MboII	GAAGA	3 cut(s)	262, 748, 751
MfeI	CAATTG	2 cut(s)	385, 597
MflI	RGATCY	1 cut(s)	705
MhlI	GDGCHC	1 cut(s)	749
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	7 cut(s)	60, 385, 530, 597, 678, 777, 853
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	2 cut(s)	122, 426
MmeI	TCCRAC	2 cut(s)	478, 735
MnlI	CCTC	5 cut(s)	16, 383, 400, 439, 705
Mox20I	TGGCCA	1 cut(s)	548
Mph1103I	ATGCAT	1 cut(s)	621
MroXI	GAANNNNTTC	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	4 cut(s)	534, 780, 830, 856
Msp20I	TGGCCA	1 cut(s)	548
MspA1I	CMGCKG	2 cut(s)	356, 824
MspI	CCGG	2 cut(s)	37, 282
MunI	CAATTG	2 cut(s)	385, 597
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	1 cut(s)	232
NdeII	GATC	3 cut(s)	210, 705, 802
NlaIII	CATG	5 cut(s)	220, 619, 623, 838, 852
NlaIV	GGNNCC	3 cut(s)	19, 41, 794
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	90
NsiI	ATGCAT	1 cut(s)	621
NspI	RCATGY	2 cut(s)	220, 838
PciI	ACATGT	2 cut(s)	216, 834
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	686, 815
Pfl23II	CGTACG	1 cut(s)	206
PkrI	GCNGC	9 cut(s)	44, 124, 127, 228, 260, 330, 424, 509, 823
PleI	GAGTC	2 cut(s)	121, 426
PpsI	GAGTC	2 cut(s)	121, 426
PscI	ACATGT	2 cut(s)	216, 834
PspLI	CGTACG	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	19, 41, 794
PspPI	GGNCC	1 cut(s)	224
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	705
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SacII	CCGCGG	1 cut(s)	825
SaqAI	TTAA	4 cut(s)	534, 780, 830, 856
SatI	GCNGC	9 cut(s)	43, 123, 126, 227, 259, 329, 423, 508, 822
Sau3AI	GATC	3 cut(s)	210, 705, 802
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	2 cut(s)	122, 426
SduI	GDGCHC	1 cut(s)	749
SfaNI	GCATC	2 cut(s)	583, 630
SfcI	CTRYAG	1 cut(s)	475
Sfr303I	CCGCGG	1 cut(s)	825
SgrBI	CCGCGG	1 cut(s)	825
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	7 cut(s)	60, 385, 530, 597, 678, 777, 853
SsiI	CCGC	8 cut(s)	43, 125, 227, 235, 259, 512, 822, 824
SspMI	CTAG	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	6 cut(s)	90, 206, 275, 350, 479, 578
TaiI	ACGT	4 cut(s)	149, 306, 505, 631
TaqI	TCGA	3 cut(s)	83, 189, 240
TasI	AATT	7 cut(s)	60, 385, 530, 597, 678, 777, 853
TauI	GCSGC	5 cut(s)	45, 128, 229, 261, 824
TfiI	GAWTC	2 cut(s)	686, 815
Tru1I	TTAA	4 cut(s)	534, 780, 830, 856
Tru9I	TTAA	4 cut(s)	534, 780, 830, 856
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	4 cut(s)	122, 328, 422, 507
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	666
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	3 cut(s)	60, 530, 678
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	2 cut(s)	220, 838
XmiI	GTMKAC	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	1 cut(s)	488
Zsp2I	ATGCAT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.